Rh5AG188500

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0002150
Physical Location & Seq
Forward (+)
21635051 .. 21637830
2780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG188500.1

Sequence Viewer

Length: 990 bp
ATGAAAAAGTACTCCTCTCTTGTTTTCAAGACAAGAATTCTGGGTGAAAATGTTGCAGTATTTTGTGGCCCTATTGGAAATAAGTTCATTTTTTCTAATGAGCAAAAACTTGTCACTGCTTGGCGCCCACATTCCCTCCAAAAGCTAATGCGTTCATACCAACAATCAGATCAAACCTCACCAACACCAACCCCAACTCTCAAGCCTACCCAAAACGAAACCACAGTAATTCGAACACCGGGTTTCTTCAAGCCTGAAGCTTTGGCTAGGTTCTTGGGGGTCATGGACATGACCACCAAACAACAACTCAAGACACATTGGGAAGGAAAGAGCAAAGTACAAGTCTATCCTTTGTCCAAAATCTTCACCTTGGCTCTGGCTAGTAGATTCTTTCTGGGTATTGAGGACTATGACTGTGTGACTAAACTAGTCCAAGAATTTGATGATGTGTCTTTGGGCCTCCATTGCATCCCTTTGAATTTTCCAGGAACTATTTTCAATAGAGCAAGTAAAGGAGCAGCTGCTATAAGGAAGCAGATCATATCCATCATCAAGGAGAAGAAAGCTGCTGCTTTGTTAAGTGGGAAGCCAGGGCATGACATACTTTCTTATATGATTGCAAGTACTGATTCTTCAGGCAAGTTCATGCCTGAAACCGAGCTTGCTGATAAGGTCATGGGTTTGCTCACTGCTGGTTATAGCACAGTTGCTAGTGCTTTAACCTTTGTCGTGAAATTTGTTGGAGAAAGACCAGATATCTACAACAAGATACTTGCAGAGCAAATGGAGATAGCAAACTCAAAGAAACCAGATGACACTCTAAACTGGGATGACATACAGAAGATGAAATATTCATGGAATGTTGCTTGTGAAGCAATGAGGTTCTTTCCACCTCTTCAAGGAACATTTAGAGAGGCCATCACTGATATCTCCTTTGAAGGTTATACCATTCCAAAGGGTTGGAAGGTCAGTAAAATAGCTAAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko00904 ko00905 ko00906 ko01100 ko01110 map00830 map00904 map00905 map00906 map01100 map01110
Pfam Domains
Protein Families
p450

Protein Analysis

329

Amino Acids

36.94

Weight (kDa)

9.38

Isoelectric Point (pI)

27.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 106 - 324 2.8e-26 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 123
AcsI RAATTY 4 cut(s) 36, 437, 478, 734
AcuI CTGAAG 2 cut(s) 276, 618
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 3 cut(s) 11, 339, 625
AfiI CCNNNNNNNGG 1 cut(s) 899
AgsI TTSAA 6 cut(s) 28, 250, 478, 499, 899, 938
AhlI ACTAGT 1 cut(s) 427
AjnI CCWGG 2 cut(s) 484, 589
AluBI AGCT 6 cut(s) 145, 260, 521, 566, 661, 980
AluI AGCT 6 cut(s) 145, 260, 521, 566, 661, 980
AoxI GGCC 3 cut(s) 67, 457, 915
ApeKI GCWGC 4 cut(s) 518, 521, 566, 569
ApoI RAATTY 4 cut(s) 36, 437, 478, 734
ArsI GACNNNNNNTTYG 2 cut(s) 327, 359
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 68, 457
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 3 cut(s) 56, 171, 358
AsuII TTCGAA 1 cut(s) 232
BanI GGYRCC 1 cut(s) 123
BarI GAAGNNNNNNTAC 2 cut(s) 616, 648
BbvI GCAGC 4 cut(s) 508, 530, 553, 556
BccI CCATC 2 cut(s) 554, 926
BciT130I CCWGG 2 cut(s) 486, 591
BcnI CCSGG 1 cut(s) 240
BcuI ACTAGT 1 cut(s) 427
BfaI CTAG 5 cut(s) 267, 381, 428, 711, 988
BfoI RGCGCY 1 cut(s) 127
BisI GCNGC 4 cut(s) 519, 522, 567, 570
BlsI GCNGC 4 cut(s) 520, 523, 568, 571
BmcAI AGTACT 2 cut(s) 11, 625
Bme1390I CCNGG 3 cut(s) 240, 486, 591
BmgT120I GGNCC 2 cut(s) 68, 457
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 3 cut(s) 240, 486, 591
BmrI ACTGGG 1 cut(s) 835
BmsI GCATC 1 cut(s) 477
BmuI ACTGGG 1 cut(s) 835
Bpu14I TTCGAA 1 cut(s) 232
BpuEI CTTGAG 2 cut(s) 185, 293
BpuMI CCSGG 1 cut(s) 240
BsaHI GRCGYC 1 cut(s) 124
BsaJI CCNNGG 2 cut(s) 369, 590
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 1 cut(s) 899
Bse1I ACTGG 1 cut(s) 830
Bse3DI GCAATG 2 cut(s) 463, 882
BseBI CCWGG 2 cut(s) 486, 591
BseDI CCNNGG 2 cut(s) 369, 590
BseGI GGATG 2 cut(s) 468, 835
BseLI CCNNNNNNNGG 1 cut(s) 899
BseMI GCAATG 2 cut(s) 463, 882
BseNI ACTGG 1 cut(s) 830
BseRI GAGGAG 1 cut(s) 4
BseXI GCAGC 4 cut(s) 508, 530, 553, 556
BshFI GGCC 3 cut(s) 69, 459, 917
BshNI GGYRCC 1 cut(s) 123
BsiSI CCGG 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 899
BsnI GGCC 3 cut(s) 69, 459, 917
Bsp119I TTCGAA 1 cut(s) 232
Bsp143I GATC 2 cut(s) 169, 537
BspANI GGCC 3 cut(s) 69, 459, 917
BspLI GGNNCC 1 cut(s) 125
BspT104I TTCGAA 1 cut(s) 232
BspT107I GGYRCC 1 cut(s) 123
BsrDI GCAATG 2 cut(s) 463, 882
BsrI ACTGG 1 cut(s) 830
BssECI CCNNGG 2 cut(s) 369, 590
BssMI GATC 2 cut(s) 169, 537
BssNI GRCGYC 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 2 cut(s) 486, 591
Bst4CI ACNGT 3 cut(s) 226, 416, 706
Bst6I CTCTTC 1 cut(s) 900
BstACI GRCGYC 1 cut(s) 124
BstBI TTCGAA 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 663
BstENI CCTNNNNNAGG 1 cut(s) 897
BstF5I GGATG 2 cut(s) 468, 835
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 2 cut(s) 172, 540
BstMBI GATC 2 cut(s) 169, 537
BstMWI GCNNNNNNNGC 2 cut(s) 465, 872
BstNI CCWGG 2 cut(s) 486, 591
BstSCI CCNGG 3 cut(s) 238, 484, 589
BstV1I GCAGC 4 cut(s) 508, 530, 553, 556
BstXI CCANNNNNNTGG 1 cut(s) 960
BsuRI GGCC 3 cut(s) 69, 459, 917
BtsCI GGATG 2 cut(s) 468, 835
BtsI GCAGTG 2 cut(s) 114, 687
BtsIMutI CAGTG 3 cut(s) 114, 687, 921
Cac8I GCNNGC 1 cut(s) 663
CfoI GCGC 1 cut(s) 126
Cfr13I GGNCC 2 cut(s) 68, 457
Csp6I GTAC 3 cut(s) 10, 338, 624
CviAII CATG 6 cut(s) 283, 289, 596, 646, 676, 855
CviQI GTAC 3 cut(s) 10, 338, 624
DinI GGCGCC 1 cut(s) 125
DpnI GATC 2 cut(s) 171, 539
DpnII GATC 2 cut(s) 169, 537
Eam1104I CTCTTC 1 cut(s) 900
EarI CTCTTC 1 cut(s) 900
Eco130I CCWWGG 1 cut(s) 369
Eco32I GATATC 2 cut(s) 757, 928
Eco57I CTGAAG 2 cut(s) 276, 618
EcoNI CCTNNNNNAGG 1 cut(s) 897
EcoRI GAATTC 1 cut(s) 36
EcoRII CCWGG 2 cut(s) 484, 589
EcoRV GATATC 2 cut(s) 757, 928
EcoT14I CCWWGG 1 cut(s) 369
EgeI GGCGCC 1 cut(s) 125
EheI GGCGCC 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 6 cut(s) 286, 292, 599, 649, 679, 858
FatI CATG 6 cut(s) 282, 288, 595, 645, 675, 854
Fnu4HI GCNGC 4 cut(s) 519, 522, 567, 570
FokI GGATG 2 cut(s) 455, 842
Fsp4HI GCNGC 4 cut(s) 519, 522, 567, 570
FspBI CTAG 5 cut(s) 267, 381, 428, 711, 988
GlaI GCGC 1 cut(s) 125
GluI GCNGC 4 cut(s) 519, 522, 567, 570
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 3 cut(s) 69, 459, 917
HapII CCGG 1 cut(s) 239
HhaI GCGC 1 cut(s) 126
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 6 cut(s) 286, 292, 599, 649, 679, 858
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 258
HinfI GANTC 2 cut(s) 387, 629
HpaII CCGG 1 cut(s) 239
HphI GGTGA 3 cut(s) 56, 171, 358
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 3 cut(s) 28, 310, 730
HpyAV CCTTC 3 cut(s) 317, 932, 958
HpyCH4III ACNGT 3 cut(s) 226, 416, 706
HpyCH4V TGCA 4 cut(s) 56, 468, 620, 776
HpyF10VI GCNNNNNNNGC 2 cut(s) 465, 872
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 6 cut(s) 286, 292, 599, 649, 679, 858
HspAI GCGC 1 cut(s) 124
KasI GGCGCC 1 cut(s) 123
Kzo9I GATC 2 cut(s) 169, 537
LmnI GCTCC 1 cut(s) 515
Lsp1109I GCAGC 4 cut(s) 508, 530, 553, 556
LweI GCATC 1 cut(s) 477
MaeI CTAG 5 cut(s) 267, 381, 428, 711, 988
MaeIII GTNAC 2 cut(s) 112, 418
MalI GATC 2 cut(s) 171, 539
MboI GATC 2 cut(s) 169, 537
MboII GAAGA 6 cut(s) 238, 355, 571, 624, 853, 887
MluCI AATT 5 cut(s) 36, 228, 437, 478, 734
Mly113I GGCGCC 1 cut(s) 124
MmeI TCCRAC 2 cut(s) 721, 941
MnlI CCTC 8 cut(s) 25, 146, 187, 397, 470, 873, 903, 907
MseI TTAA 2 cut(s) 578, 719
MslI CAYNNNNRTG 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 521
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 3 cut(s) 240, 486, 591
MvaI CCWGG 2 cut(s) 486, 591
MwoI GCNNNNNNNGC 2 cut(s) 465, 872
NarI GGCGCC 1 cut(s) 124
NciI CCSGG 1 cut(s) 240
NdeII GATC 2 cut(s) 169, 537
NlaIII CATG 6 cut(s) 286, 292, 599, 649, 679, 858
NlaIV GGNNCC 1 cut(s) 125
NmuCI GTSAC 2 cut(s) 112, 418
NspV TTCGAA 1 cut(s) 232
PfeI GAWTC 2 cut(s) 387, 629
PfoI TCCNGGA 1 cut(s) 484
PkrI GCNGC 4 cut(s) 520, 523, 568, 571
PluTI GGCGCC 1 cut(s) 127
Psp6I CCWGG 2 cut(s) 484, 589
PspGI CCWGG 2 cut(s) 484, 589
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 2 cut(s) 68, 457
PvuII CAGCTG 1 cut(s) 521
RsaI GTAC 3 cut(s) 11, 339, 625
RsaNI GTAC 3 cut(s) 10, 338, 624
RseI CAYNNNNRTG 1 cut(s) 287
SaqAI TTAA 2 cut(s) 578, 719
SatI GCNGC 4 cut(s) 519, 522, 567, 570
Sau3AI GATC 2 cut(s) 169, 537
Sau96I GGNCC 2 cut(s) 68, 457
ScaI AGTACT 2 cut(s) 11, 625
ScrFI CCNGG 3 cut(s) 240, 486, 591
SfaNI GCATC 1 cut(s) 477
SfoI GGCGCC 1 cut(s) 125
SfuI TTCGAA 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 287
SmlI CTYRAG 2 cut(s) 200, 308
SmoI CTYRAG 2 cut(s) 200, 308
SpeI ACTAGT 1 cut(s) 427
Sse9I AATT 5 cut(s) 36, 228, 437, 478, 734
SspDI GGCGCC 1 cut(s) 123
SspI AATATT 1 cut(s) 851
SspMI CTAG 5 cut(s) 267, 381, 428, 711, 988
StyD4I CCNGG 3 cut(s) 238, 484, 589
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 3 cut(s) 226, 416, 706
TaqI TCGA 1 cut(s) 232
TasI AATT 5 cut(s) 36, 228, 437, 478, 734
TatI WGTACW 3 cut(s) 9, 337, 623
TfiI GAWTC 2 cut(s) 387, 629
Tru1I TTAA 2 cut(s) 578, 719
Tru9I TTAA 2 cut(s) 578, 719
TscAI CASTG 3 cut(s) 121, 694, 928
TseFI GTSAC 2 cut(s) 112, 418
TseI GCWGC 4 cut(s) 518, 521, 566, 569
Tsp45I GTSAC 2 cut(s) 112, 418
TspDTI ATGAA 6 cut(s) 17, 76, 144, 634, 843, 860
TspRI CASTG 3 cut(s) 121, 694, 928
XagI CCTNNNNNAGG 1 cut(s) 897
XapI RAATTY 4 cut(s) 36, 437, 478, 734
XspI CTAG 5 cut(s) 267, 381, 428, 711, 988
ZrmI AGTACT 2 cut(s) 11, 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.