Rw5G017060

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002150
Physical Location & Seq
Forward (+)
21834447 .. 21836319
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G017060.1

Sequence Viewer

Length: 1383 bp
ATGGAGCCTCTTTATCTTACTATCATAGTCGTTGTTACCACCCTTGTTCTTATCATTCTCACTTACCCCAAAAACTCTAGCTCCAACCACAACCTTCCCCCAGGCAGTTTCGGATGGCCAATTCTCGGGGAAACACTTGAATTCTTGTTTGGAAAGCCTGACAAATTTGTGGAGAAAAGGATGAAAAAGTACTCCTCTCTTGTTTTCAAGACAAGAATTCTGGGTGAAAATGTTGCAGTATTTTGTGGCCCTATTGGAAATAAGTTCATTTTTTCTAATGAGCAAAAACTTGTCACTGCTTGGCGCCCACATTCCCTCCAAAAGCTAATGCGTTCATACCAACAATCAGATCAAACCTCACCAACACCAACCCCAACTCTCAAGCCTACCCAAAACGAAACCACAGTAATTCGAACACCGGGTTTCTTCAAGCCTGAAGCTTTGGCTAGGTTCTTGGGGGTCATGGACATGACCACCAAACAACAACTCAAGACACATTGGGAAGGAAAGAGCAAAGTACAAGTCTATCCTTTGTCCAAAATCTTCACCTTGGCTCTGGCTAGTAGATTCTTTCTGGGTATTGAGGACTATGACTGTGTGACTAAACTAGTCCAAGAATTTGATGATGTGTCTTTGGGCCTCCATTGCATCCCTTTGAATTTTCCAGGAACTATTTTCAATAGAGCAAGTAAAGGAGCAGCTGCTATAAGGAAGCAGATCATATCCATCATCAAGGAGAAGAAAGCTGCTGCTTTGTTAAGTGGGAAGCCAGGGCATGACATACTTTCTTACATGATTGCAAGTACTGATTCTTCAGGCAAGTTCATGCCTGAAACCGAGCTTGCTGATAAGGTCATGGGTTTGCTCACTGCTGGTTATAGCACAGTTGCTAGTGCTTTAACCTTTGTCATGAAATTTGTTGGAGAAAGACCAGATATCTACAACAAGATACTTGCAGAGCAAATGGAGATAGCAAACTCAAAGAAACCAGATGACACTCTAAACTGGGATGACATACAGAAGATGAAATATTCATGGAATGTTGCTTGTGAAGCAATGAGGTTCTTTCCACCTCTTCAAGGAACATTTAGAGAGGCCATCACTGATATCTCCTTTGAAGGTTATACCATTCCAAAGGGTTGGAAGATATATTGGACGGTGAGTTCAACAAATAAGAACCCAGAATACTTTCCCAACCCAGAGAAGTTTGATCCTACAAGATATGAGGAGGGAAGTGCACAAGTGCCGTTCACATACGTCCCATTTGGGGGAGGACCAAGACTGTGCCCTGGAAAAGAGTACGCCAGGCTAGCAATACTCACTTTTCTTCACAATGTAGTGATGAAGTTCAAATGGGAGACATGCTTCTCAATGAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko00904 ko00905 ko00906 ko01100 ko01110 map00830 map00904 map00905 map00906 map01100 map01110
Pfam Domains
Protein Families
p450

Protein Analysis

460

Amino Acids

52.07

Weight (kDa)

9.24

Isoelectric Point (pI)

32.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 33 - 455 4.2e-56 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 303
AclWI GGATC 1 cut(s) 1205
AcoI YGGCCR 1 cut(s) 116
AcsI RAATTY 6 cut(s) 140, 164, 216, 617, 658, 914
AcuI CTGAAG 2 cut(s) 456, 798
AcyI GRCGYC 1 cut(s) 304
AfaI GTAC 4 cut(s) 191, 519, 805, 1301
AfiI CCNNNNNNNGG 4 cut(s) 125, 1079, 1267, 1268
AgsI TTSAA 9 cut(s) 140, 208, 430, 658, 679, 1079, 1118, 1167, 1351
AhlI ACTAGT 1 cut(s) 607
AjnI CCWGG 5 cut(s) 100, 664, 769, 1288, 1304
AjuI GAANNNNNNNTTGG 2 cut(s) 132, 164
AloI GAACNNNNNNTCC 2 cut(s) 1147, 1179
AluBI AGCT 6 cut(s) 81, 325, 440, 701, 746, 841
AluI AGCT 6 cut(s) 81, 325, 440, 701, 746, 841
Alw21I GWGCWC 1 cut(s) 1240
Alw26I GTCTC 1 cut(s) 1352
Alw44I GTGCAC 1 cut(s) 1236
AlwI GGATC 1 cut(s) 1205
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 4 cut(s) 116, 247, 637, 1095
ApaLI GTGCAC 1 cut(s) 1236
ApeKI GCWGC 4 cut(s) 698, 701, 746, 749
ApoI RAATTY 6 cut(s) 140, 164, 216, 617, 658, 914
ArsI GACNNNNNNTTYG 2 cut(s) 507, 539
Asp700I GAANNNNTTC 1 cut(s) 1188
AspLEI GCGC 1 cut(s) 306
AspS9I GGNCC 3 cut(s) 248, 637, 1274
AsuC2I CCSGG 1 cut(s) 420
AsuHPI GGTGA 4 cut(s) 236, 351, 538, 1171
AsuII TTCGAA 1 cut(s) 412
AsuNHI GCTAGC 1 cut(s) 1309
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 1 cut(s) 1274
BaeGI GKGCMC 2 cut(s) 1240, 1289
BalI TGGCCA 1 cut(s) 118
BanI GGYRCC 1 cut(s) 303
BarI GAAGNNNNNNTAC 2 cut(s) 796, 828
Bbv12I GWGCWC 1 cut(s) 1240
BbvI GCAGC 4 cut(s) 688, 710, 733, 736
BccI CCATC 3 cut(s) 108, 734, 1106
BceAI ACGGC 1 cut(s) 1231
BciT130I CCWGG 5 cut(s) 102, 666, 771, 1290, 1306
BcnI CCSGG 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 1352
BcuI ACTAGT 1 cut(s) 607
BfaI CTAG 6 cut(s) 78, 447, 561, 608, 891, 1310
BfoI RGCGCY 1 cut(s) 307
BisI GCNGC 4 cut(s) 699, 702, 747, 750
BlsI GCNGC 4 cut(s) 700, 703, 748, 751
BmcAI AGTACT 2 cut(s) 191, 805
Bme1390I CCNGG 6 cut(s) 102, 420, 666, 771, 1290, 1306
Bme18I GGWCC 1 cut(s) 1274
BmeT110I CYCGRG 1 cut(s) 125
BmgT120I GGNCC 3 cut(s) 248, 637, 1274
BmiI GGNNCC 2 cut(s) 6, 305
BmrFI CCNGG 6 cut(s) 102, 420, 666, 771, 1290, 1306
BmrI ACTGGG 1 cut(s) 1015
BmsI GCATC 1 cut(s) 657
BmtI GCTAGC 1 cut(s) 1313
BmuI ACTGGG 1 cut(s) 1015
Bpu14I TTCGAA 1 cut(s) 412
BpuEI CTTGAG 2 cut(s) 365, 473
BpuMI CCSGG 1 cut(s) 420
BsaHI GRCGYC 1 cut(s) 304
BsaJI CCNNGG 4 cut(s) 100, 549, 770, 1288
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 300, 330
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 1079, 1267, 1268
Bse1I ACTGG 1 cut(s) 1010
Bse3DI GCAATG 2 cut(s) 643, 1062
BseBI CCWGG 5 cut(s) 102, 666, 771, 1290, 1306
BseDI CCNNGG 4 cut(s) 100, 549, 770, 1288
BseGI GGATG 4 cut(s) 119, 186, 648, 1015
BseLI CCNNNNNNNGG 4 cut(s) 125, 1079, 1267, 1268
BseMI GCAATG 2 cut(s) 643, 1062
BseNI ACTGG 1 cut(s) 1010
BseRI GAGGAG 2 cut(s) 184, 1241
BseSI GKGCMC 2 cut(s) 1240, 1289
BseXI GCAGC 4 cut(s) 688, 710, 733, 736
BshFI GGCC 4 cut(s) 118, 249, 639, 1097
BshNI GGYRCC 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 1240
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 1 cut(s) 419
BslFI GGGAC 1 cut(s) 1244
BslI CCNNNNNNNGG 4 cut(s) 125, 1079, 1267, 1268
BsmAI GTCTC 1 cut(s) 1352
BsmFI GGGAC 1 cut(s) 1244
BsnI GGCC 4 cut(s) 118, 249, 639, 1097
BsoBI CYCGRG 1 cut(s) 125
Bsp119I TTCGAA 1 cut(s) 412
Bsp1286I GDGCHC 2 cut(s) 1240, 1289
Bsp143I GATC 3 cut(s) 349, 717, 1210
BspANI GGCC 4 cut(s) 118, 249, 639, 1097
BspHI TCATGA 1 cut(s) 909
BspLI GGNNCC 2 cut(s) 6, 305
BspOI GCTAGC 1 cut(s) 1313
BspPI GGATC 1 cut(s) 1205
BspT104I TTCGAA 1 cut(s) 412
BspT107I GGYRCC 1 cut(s) 303
BsrDI GCAATG 2 cut(s) 643, 1062
BsrI ACTGG 1 cut(s) 1010
BssECI CCNNGG 4 cut(s) 100, 549, 770, 1288
BssMI GATC 3 cut(s) 349, 717, 1210
BssNI GRCGYC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 549
Bst2UI CCWGG 5 cut(s) 102, 666, 771, 1290, 1306
Bst4CI ACNGT 5 cut(s) 406, 596, 886, 1159, 1284
Bst6I CTCTTC 1 cut(s) 1080
BstACI GRCGYC 1 cut(s) 304
BstBI TTCGAA 1 cut(s) 412
BstC8I GCNNGC 2 cut(s) 843, 1311
BstENI CCTNNNNNAGG 1 cut(s) 1077
BstF5I GGATG 4 cut(s) 119, 186, 648, 1015
BstH2I RGCGCY 1 cut(s) 307
BstHHI GCGC 1 cut(s) 306
BstKTI GATC 3 cut(s) 352, 720, 1213
BstMAI GTCTC 1 cut(s) 1352
BstMBI GATC 3 cut(s) 349, 717, 1210
BstMWI GCNNNNNNNGC 3 cut(s) 645, 1052, 1310
BstNI CCWGG 5 cut(s) 102, 666, 771, 1290, 1306
BstNSI RCATGY 1 cut(s) 1365
BstSCI CCNGG 6 cut(s) 100, 418, 664, 769, 1288, 1304
BstSLI GKGCMC 2 cut(s) 1240, 1289
BstV1I GCAGC 4 cut(s) 688, 710, 733, 736
BstXI CCANNNNNNTGG 1 cut(s) 1140
BsuRI GGCC 4 cut(s) 118, 249, 639, 1097
BtsCI GGATG 4 cut(s) 119, 186, 648, 1015
BtsI GCAGTG 2 cut(s) 294, 867
BtsIMutI CAGTG 3 cut(s) 294, 867, 1101
Cac8I GCNNGC 2 cut(s) 843, 1311
CciI TCATGA 1 cut(s) 909
CfoI GCGC 1 cut(s) 306
Cfr13I GGNCC 3 cut(s) 248, 637, 1274
Csp6I GTAC 4 cut(s) 190, 518, 804, 1300
CviAII CATG 9 cut(s) 463, 469, 776, 793, 826, 856, 910, 1035, 1362
CviQI GTAC 4 cut(s) 190, 518, 804, 1300
DinI GGCGCC 1 cut(s) 305
DpnI GATC 3 cut(s) 351, 719, 1212
DpnII GATC 3 cut(s) 349, 717, 1210
EaeI YGGCCR 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 1080
EarI CTCTTC 1 cut(s) 1080
Eco130I CCWWGG 1 cut(s) 549
Eco32I GATATC 2 cut(s) 937, 1108
Eco47I GGWCC 1 cut(s) 1274
Eco57I CTGAAG 2 cut(s) 456, 798
Eco88I CYCGRG 1 cut(s) 125
EcoNI CCTNNNNNAGG 1 cut(s) 1077
EcoRI GAATTC 2 cut(s) 140, 216
EcoRII CCWGG 5 cut(s) 100, 664, 769, 1288, 1304
EcoRV GATATC 2 cut(s) 937, 1108
EcoT14I CCWWGG 1 cut(s) 549
EgeI GGCGCC 1 cut(s) 305
EheI GGCGCC 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 549
FaeI CATG 9 cut(s) 466, 472, 779, 796, 829, 859, 913, 1038, 1365
FaqI GGGAC 1 cut(s) 1244
FatI CATG 9 cut(s) 462, 468, 775, 792, 825, 855, 909, 1034, 1361
Fnu4HI GCNGC 4 cut(s) 699, 702, 747, 750
FokI GGATG 4 cut(s) 126, 193, 635, 1022
Fsp4HI GCNGC 4 cut(s) 699, 702, 747, 750
FspBI CTAG 6 cut(s) 78, 447, 561, 608, 891, 1310
GlaI GCGC 1 cut(s) 305
GluI GCNGC 4 cut(s) 699, 702, 747, 750
HaeII RGCGCY 1 cut(s) 307
HaeIII GGCC 4 cut(s) 118, 249, 639, 1097
HapII CCGG 1 cut(s) 419
HhaI GCGC 1 cut(s) 306
Hin1I GRCGYC 1 cut(s) 304
Hin1II CATG 9 cut(s) 466, 472, 779, 796, 829, 859, 913, 1038, 1365
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 438
HinfI GANTC 2 cut(s) 567, 809
HpaII CCGG 1 cut(s) 419
HphI GGTGA 4 cut(s) 236, 351, 538, 1171
Hpy166II GTNNAC 2 cut(s) 1238, 1251
Hpy188I TCNGA 2 cut(s) 113, 349
Hpy188III TCNNGA 3 cut(s) 208, 490, 910
Hpy8I GTNNAC 2 cut(s) 1238, 1251
HpyAV CCTTC 3 cut(s) 104, 497, 1112
HpyCH4III ACNGT 5 cut(s) 406, 596, 886, 1159, 1284
HpyCH4IV ACGT 1 cut(s) 1257
HpyCH4V TGCA 5 cut(s) 236, 648, 800, 956, 1238
HpyF10VI GCNNNNNNNGC 3 cut(s) 645, 1052, 1310
HpySE526I ACGT 1 cut(s) 1257
Hsp92I GRCGYC 1 cut(s) 304
Hsp92II CATG 9 cut(s) 466, 472, 779, 796, 829, 859, 913, 1038, 1365
HspAI GCGC 1 cut(s) 304
KasI GGCGCC 1 cut(s) 303
Kzo9I GATC 3 cut(s) 349, 717, 1210
LmnI GCTCC 3 cut(s) 4, 86, 695
Lsp1109I GCAGC 4 cut(s) 688, 710, 733, 736
LweI GCATC 1 cut(s) 657
MaeI CTAG 6 cut(s) 78, 447, 561, 608, 891, 1310
MaeII ACGT 1 cut(s) 1257
MaeIII GTNAC 3 cut(s) 34, 292, 598
MalI GATC 3 cut(s) 351, 719, 1212
MboI GATC 3 cut(s) 349, 717, 1210
MboII GAAGA 8 cut(s) 418, 535, 751, 804, 1033, 1067, 1156, 1319
MhlI GDGCHC 2 cut(s) 1240, 1289
MlsI TGGCCA 1 cut(s) 118
MluCI AATT 8 cut(s) 120, 140, 164, 216, 408, 617, 658, 914
MluNI TGGCCA 1 cut(s) 118
Mly113I GGCGCC 1 cut(s) 304
MmeI TCCRAC 3 cut(s) 108, 901, 1121
Mox20I TGGCCA 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 1188
MscI TGGCCA 1 cut(s) 118
MseI TTAA 2 cut(s) 758, 899
MslI CAYNNNNRTG 1 cut(s) 467
Msp20I TGGCCA 1 cut(s) 118
MspA1I CMGCKG 1 cut(s) 701
MspI CCGG 1 cut(s) 419
MspR9I CCNGG 6 cut(s) 102, 420, 666, 771, 1290, 1306
MvaI CCWGG 5 cut(s) 102, 666, 771, 1290, 1306
MwoI GCNNNNNNNGC 3 cut(s) 645, 1052, 1310
NarI GGCGCC 1 cut(s) 304
NciI CCSGG 1 cut(s) 420
NdeII GATC 3 cut(s) 349, 717, 1210
NheI GCTAGC 1 cut(s) 1309
NlaIII CATG 9 cut(s) 466, 472, 779, 796, 829, 859, 913, 1038, 1365
NlaIV GGNNCC 2 cut(s) 6, 305
NmuCI GTSAC 2 cut(s) 292, 598
NspI RCATGY 1 cut(s) 1365
NspV TTCGAA 1 cut(s) 412
PagI TCATGA 1 cut(s) 909
PdmI GAANNNNTTC 1 cut(s) 1188
PfeI GAWTC 2 cut(s) 567, 809
PfoI TCCNGGA 1 cut(s) 664
PkrI GCNGC 4 cut(s) 700, 703, 748, 751
PluTI GGCGCC 1 cut(s) 307
Psp6I CCWGG 5 cut(s) 100, 664, 769, 1288, 1304
PspGI CCWGG 5 cut(s) 100, 664, 769, 1288, 1304
PspN4I GGNNCC 2 cut(s) 6, 305
PspPI GGNCC 3 cut(s) 248, 637, 1274
PsrI GAACNNNNNNTAC 2 cut(s) 1169, 1201
PvuII CAGCTG 1 cut(s) 701
RsaI GTAC 4 cut(s) 191, 519, 805, 1301
RsaNI GTAC 4 cut(s) 190, 518, 804, 1300
RseI CAYNNNNRTG 1 cut(s) 467
SaqAI TTAA 2 cut(s) 758, 899
SatI GCNGC 4 cut(s) 699, 702, 747, 750
Sau3AI GATC 3 cut(s) 349, 717, 1210
Sau96I GGNCC 3 cut(s) 248, 637, 1274
ScaI AGTACT 2 cut(s) 191, 805
ScrFI CCNGG 6 cut(s) 102, 420, 666, 771, 1290, 1306
SduI GDGCHC 2 cut(s) 1240, 1289
SfaNI GCATC 1 cut(s) 657
SfoI GGCGCC 1 cut(s) 305
SfuI TTCGAA 1 cut(s) 412
SinI GGWCC 1 cut(s) 1274
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 2 cut(s) 380, 488
SmoI CTYRAG 2 cut(s) 380, 488
SpeI ACTAGT 1 cut(s) 607
Sse9I AATT 8 cut(s) 120, 140, 164, 216, 408, 617, 658, 914
SspDI GGCGCC 1 cut(s) 303
SspI AATATT 1 cut(s) 1031
SspMI CTAG 6 cut(s) 78, 447, 561, 608, 891, 1310
StyD4I CCNGG 6 cut(s) 100, 418, 664, 769, 1288, 1304
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 5 cut(s) 406, 596, 886, 1159, 1284
TaiI ACGT 1 cut(s) 1260
TaqI TCGA 1 cut(s) 412
TasI AATT 8 cut(s) 120, 140, 164, 216, 408, 617, 658, 914
TatI WGTACW 3 cut(s) 189, 517, 803
TfiI GAWTC 2 cut(s) 567, 809
Tru1I TTAA 2 cut(s) 758, 899
Tru9I TTAA 2 cut(s) 758, 899
TscAI CASTG 3 cut(s) 301, 874, 1108
TseFI GTSAC 2 cut(s) 292, 598
TseI GCWGC 4 cut(s) 698, 701, 746, 749
Tsp45I GTSAC 2 cut(s) 292, 598
TspDTI ATGAA 8 cut(s) 197, 256, 324, 814, 926, 1023, 1040, 1358
TspRI CASTG 3 cut(s) 301, 874, 1108
VneI GTGCAC 1 cut(s) 1236
VpaK11BI GGWCC 1 cut(s) 1274
XagI CCTNNNNNAGG 1 cut(s) 1077
XapI RAATTY 6 cut(s) 140, 164, 216, 617, 658, 914
XceI RCATGY 1 cut(s) 1365
XmnI GAANNNNTTC 1 cut(s) 1188
XspI CTAG 6 cut(s) 78, 447, 561, 608, 891, 1310
ZrmI AGTACT 2 cut(s) 191, 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.