RchiOBHm_Chr5g0018521

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002150
Physical Location & Seq
Reverse (-)
13058085 .. 13060140
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29873

Sequence Viewer

Length: 1449 bp
ATGGAGACCCTTTACCTTGTTCTCTCTTTGGGTGCTGCTCTTTTCGCCTTTGCCCTCTTCGCATTCAAATCTGAAGATGGCAAGAACCTCCCACCAGGCAGCATGGGGTGGCCTATTGTGGGAGAAACTCTCGAGTTTCTTTTTGGCAAGCCGGAAAACTTTGTGTTCAAGAGGATGAAGAGGTACTCCCCTGACATCTTCAAGACCAAGATTCTTGGGGAGAAAACCGCTGTCATTTGTGGACCTAATGGACACAAATTTCTCTTCACCAATGAGCAAAAATACTTCACTGCATTTCGACCACACTCCATGCAGAAGATGTTCAGGTCATACAAGGCTGCTGCAGCTGCTGCTCCTGCTCCGAAACAGCCTGCTCGTGACGAAGAGGCGAAAGTACTAAGGTCACCGGGGTTCCTTAAGCCAGAAGCATTGATGAGGTACTTGGGGAAAATGGACTCAATCACCCAAGAACAGATGAAGGTCGACTGGGAAGGCAAGAATCAGGTCTTGGCCTACCCTTTGGCCAAGACTTTGACTCTTAGTCTTGCCTGCAGATTCTTCTTGGGGATTGATGAGCCGGAGAGGATTGCTAGGCTTGTGGAGAACTTTGATGATGTGACTGTAGGGATGCACTCACTTATTGTGAACTTCCCGGGAACCATTTTCTACAGAGCAACAAAAGCAGCTGATGCGATCAGGAAAGAGTTGAAGACTGTGATCCAGGAGAAGAAGGCTGCAATGGCATCAGGAGCACCCATGATGGATATTCTGACACATATGATTGTGGCCAGTGACCCATCTGGGCAACACATGCCTGAGGCTGAGATTGCAGATAAGATGATGGGTTTGTTGACTGCTGGGTATAGTACTGTGGCTACTGCTATGACTTTCTTCATGAAGTATGTGGGAGAAAGGCCTGACATCTATGCCAAGGTCCTAGCAGAACAAATGGAGGTTGCAGAGTCAAAAAAGCCTGGACAACTTTTGGAATGGGATGACTTGAACAAGATGAAGTACTCATGGAATGTCATCTATGAGGTTATGAGATTCACTCCACCACTTCAGGGAACATTCAGAGAGGCCTTGACCGATTTCGAGTATGCCGGTTACACCATTCCCAAGGGCTGGAAGGTATATTGGACTGTCAGCACAACAAACATGAACCCAGAATACTTCCCCAACCCAGAGAAGTTTGACCCCTCAAGATATGATAACATAAGCGCATTCCCACCATTCACATTTGTTCCATTTGGAGGAGGACCAAGAATGTGCCCCGGAAAAGAGTATGCTAGGCTTGCAATACTCACTTTTGTTCACAATGTGGTCAAGAGGTTCAAGTGGGAAGTGGTGTTTCCCAAGGAAAAGATCACAGGTGATATGATGCCTACCCCAGAAAAGGACTTCCAATTCGCCTTACTTGTCACTAGGCATGATCAGGGACTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

482

Amino Acids

54.68

Weight (kDa)

8.84

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 31 - 451 3.7e-62 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1125
AccI GTMKAC 1 cut(s) 483
AciI CCGC 1 cut(s) 228
AclWI GGATC 1 cut(s) 712
AcoI YGGCCR 2 cut(s) 522, 786
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 2 cut(s) 93, 1046
AdeI CACNNNGTG 1 cut(s) 1321
AfaI GTAC 5 cut(s) 185, 396, 440, 868, 1016
AfiI CCNNNNNNNGG 5 cut(s) 119, 1064, 1125, 1253, 1396
AflII CTTAAG 1 cut(s) 416
AgsI TTSAA 6 cut(s) 67, 169, 202, 709, 1003, 1336
AhdI GACNNNNNGTC 1 cut(s) 540
AjnI CCWGG 3 cut(s) 94, 720, 973
AjuI GAANNNNNNNTTGG 2 cut(s) 491, 523
AluBI AGCT 2 cut(s) 347, 686
AluI AGCT 2 cut(s) 347, 686
Alw21I GWGCWC 1 cut(s) 754
AlwI GGATC 1 cut(s) 712
AlwNI CAGNNNCTG 1 cut(s) 350
Ama87I CYCGRG 2 cut(s) 131, 652
AoxI GGCC 6 cut(s) 110, 510, 522, 786, 914, 1080
ApeKI GCWGC 9 cut(s) 35, 99, 338, 341, 344, 347, 350, 683, 734
ApoI RAATTY 1 cut(s) 257
ArsI GACNNNNNNTTYG 2 cut(s) 1391, 1423
Asp700I GAANNNNTTC 1 cut(s) 320
AspLEI GCGC 1 cut(s) 1223
AspS9I GGNCC 3 cut(s) 242, 934, 1259
AsuC2I CCSGG 4 cut(s) 408, 653, 654, 1275
AsuHPI GGTGA 4 cut(s) 259, 396, 454, 1385
AvaI CYCGRG 2 cut(s) 131, 652
AvaII GGWCC 3 cut(s) 242, 934, 1259
AxyI CCTNAGG 1 cut(s) 816
BaeGI GKGCMC 1 cut(s) 1274
BalI TGGCCA 2 cut(s) 524, 788
BauI CACGAG 1 cut(s) 375
BbsI GAAGAC 1 cut(s) 716
Bbv12I GWGCWC 1 cut(s) 754
BbvI GCAGC 9 cut(s) 22, 111, 325, 328, 334, 337, 356, 695, 721
BccI CCATC 4 cut(s) 71, 754, 805, 835
BciT130I CCWGG 3 cut(s) 96, 722, 975
BclI TGATCA 1 cut(s) 1432
BcnI CCSGG 4 cut(s) 408, 653, 654, 1275
BfaI CTAG 4 cut(s) 591, 938, 1290, 1425
BfmI CTRYAG 4 cut(s) 342, 550, 621, 667
BfrI CTTAAG 1 cut(s) 416
BisI GCNGC 9 cut(s) 36, 100, 339, 342, 345, 348, 351, 684, 735
BlsI GCNGC 9 cut(s) 37, 101, 340, 343, 346, 349, 352, 685, 736
BmcAI AGTACT 3 cut(s) 396, 868, 1016
Bme1390I CCNGG 7 cut(s) 96, 408, 653, 654, 722, 975, 1275
Bme18I GGWCC 3 cut(s) 242, 934, 1259
BmeRI GACNNNNNGTC 1 cut(s) 540
BmeT110I CYCGRG 2 cut(s) 131, 652
BmgT120I GGNCC 3 cut(s) 242, 934, 1259
BmiI GGNNCC 2 cut(s) 413, 658
BmrFI CCNGG 7 cut(s) 96, 408, 653, 654, 722, 975, 1275
BmrI ACTGGG 1 cut(s) 496
BmsI GCATC 4 cut(s) 618, 679, 752, 1371
BmuI ACTGGG 1 cut(s) 496
BpiI GAAGAC 1 cut(s) 716
BplI GAGNNNNNCTC 4 cut(s) 114, 146, 1036, 1068
BpuEI CTTGAG 1 cut(s) 1186
BpuMI CCSGG 4 cut(s) 408, 653, 654, 1275
BsaJI CCNNGG 6 cut(s) 407, 652, 930, 1119, 1273, 1356
Bsc4I CCNNNNNNNGG 5 cut(s) 119, 1064, 1125, 1253, 1396
Bse118I RCCGGY 1 cut(s) 1103
Bse1I ACTGG 2 cut(s) 491, 789
Bse21I CCTNAGG 1 cut(s) 816
Bse3DI GCAATG 1 cut(s) 744
BseBI CCWGG 3 cut(s) 96, 722, 975
BseDI CCNNGG 6 cut(s) 407, 652, 930, 1119, 1273, 1356
BseGI GGATG 3 cut(s) 180, 633, 1000
BseLI CCNNNNNNNGG 5 cut(s) 119, 1064, 1125, 1253, 1396
BseMI GCAATG 1 cut(s) 744
BseMII CTCAG 2 cut(s) 807, 813
BseNI ACTGG 2 cut(s) 491, 789
BseRI GAGGAG 1 cut(s) 1269
BseSI GKGCMC 1 cut(s) 1274
BseXI GCAGC 9 cut(s) 22, 111, 325, 328, 334, 337, 356, 695, 721
BseYI CCCAGC 1 cut(s) 857
BshFI GGCC 6 cut(s) 112, 512, 524, 788, 916, 1082
BsiHKAI GWGCWC 1 cut(s) 754
BsiHKCI CYCGRG 2 cut(s) 131, 652
BsiSI CCGG 6 cut(s) 152, 407, 578, 653, 1104, 1275
BslI CCNNNNNNNGG 5 cut(s) 119, 1064, 1125, 1253, 1396
BsmI GAATGC 2 cut(s) 62, 1223
BsnI GGCC 6 cut(s) 112, 512, 524, 788, 916, 1082
BsoBI CYCGRG 2 cut(s) 131, 652
Bsp1286I GDGCHC 2 cut(s) 754, 1274
Bsp143I GATC 4 cut(s) 693, 717, 1365, 1432
BspACI CCGC 1 cut(s) 228
BspANI GGCC 6 cut(s) 112, 512, 524, 788, 916, 1082
BspCNI CTCAG 2 cut(s) 808, 814
BspHI TCATGA 1 cut(s) 894
BspLI GGNNCC 2 cut(s) 413, 658
BspMAI CTGCAG 2 cut(s) 346, 554
BspPI GGATC 1 cut(s) 712
BspTI CTTAAG 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 744
BsrFI RCCGGY 1 cut(s) 1103
BsrI ACTGG 2 cut(s) 491, 789
BssAI RCCGGY 1 cut(s) 1103
BssECI CCNNGG 6 cut(s) 407, 652, 930, 1119, 1273, 1356
BssMI GATC 4 cut(s) 693, 717, 1365, 1432
BssSI CACGAG 1 cut(s) 375
BssT1I CCWWGG 3 cut(s) 930, 1119, 1356
Bst2BI CACGAG 1 cut(s) 375
Bst2UI CCWGG 3 cut(s) 96, 722, 975
Bst4CI ACNGT 4 cut(s) 622, 715, 871, 1144
Bst6I CTCTTC 4 cut(s) 62, 173, 269, 378
BstAFI CTTAAG 1 cut(s) 416
BstAPI GCANNNNNTGC 3 cut(s) 350, 689, 811
BstC8I GCNNGC 4 cut(s) 149, 372, 550, 1296
BstDEI CTNAG 4 cut(s) 398, 539, 816, 822
BstEII GGTNACC 1 cut(s) 402
BstF5I GGATG 3 cut(s) 180, 633, 1000
BstHHI GCGC 1 cut(s) 1223
BstKTI GATC 4 cut(s) 696, 720, 1368, 1435
BstMBI GATC 4 cut(s) 693, 717, 1365, 1432
BstNI CCWGG 3 cut(s) 96, 722, 975
BstNSI RCATGY 1 cut(s) 814
BstPI GGTNACC 1 cut(s) 402
BstSCI CCNGG 7 cut(s) 94, 406, 651, 652, 720, 973, 1273
BstSFI CTRYAG 4 cut(s) 342, 550, 621, 667
BstSLI GKGCMC 1 cut(s) 1274
BstV1I GCAGC 9 cut(s) 22, 111, 325, 328, 334, 337, 356, 695, 721
BstV2I GAAGAC 1 cut(s) 716
Bsu36I CCTNAGG 1 cut(s) 816
BsuRI GGCC 6 cut(s) 112, 512, 524, 788, 916, 1082
BtsCI GGATG 3 cut(s) 180, 633, 1000
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 2 cut(s) 288, 796
Cac8I GCNNGC 4 cut(s) 149, 372, 550, 1296
CaiI CAGNNNCTG 1 cut(s) 350
CciI TCATGA 1 cut(s) 894
CfoI GCGC 1 cut(s) 1223
Cfr10I RCCGGY 1 cut(s) 1103
Cfr13I GGNCC 3 cut(s) 242, 934, 1259
Cfr9I CCCGGG 1 cut(s) 652
Csp6I GTAC 5 cut(s) 184, 395, 439, 867, 1015
CviAII CATG 8 cut(s) 103, 310, 757, 811, 895, 1020, 1159, 1430
CviQI GTAC 5 cut(s) 184, 395, 439, 867, 1015
DdeI CTNAG 4 cut(s) 398, 539, 816, 822
DpnI GATC 4 cut(s) 695, 719, 1367, 1434
DpnII GATC 4 cut(s) 693, 717, 1365, 1432
DraIII CACNNNGTG 1 cut(s) 1321
DriI GACNNNNNGTC 1 cut(s) 540
EaeI YGGCCR 2 cut(s) 522, 786
Eam1104I CTCTTC 4 cut(s) 62, 173, 269, 378
Eam1105I GACNNNNNGTC 1 cut(s) 540
EarI CTCTTC 4 cut(s) 62, 173, 269, 378
Eco130I CCWWGG 3 cut(s) 930, 1119, 1356
Eco147I AGGCCT 2 cut(s) 916, 1082
Eco47I GGWCC 3 cut(s) 242, 934, 1259
Eco57I CTGAAG 2 cut(s) 93, 1046
Eco81I CCTNAGG 1 cut(s) 816
Eco88I CYCGRG 2 cut(s) 131, 652
Eco91I GGTNACC 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 934
EcoO65I GGTNACC 1 cut(s) 402
EcoRII CCWGG 3 cut(s) 94, 720, 973
EcoT14I CCWWGG 3 cut(s) 930, 1119, 1356
ErhI CCWWGG 3 cut(s) 930, 1119, 1356
FaeI CATG 8 cut(s) 106, 313, 760, 814, 898, 1023, 1162, 1433
FatI CATG 8 cut(s) 102, 309, 756, 810, 894, 1019, 1158, 1429
FauNDI CATATG 1 cut(s) 777
FbaI TGATCA 1 cut(s) 1432
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 9 cut(s) 36, 100, 339, 342, 345, 348, 351, 684, 735
FokI GGATG 3 cut(s) 187, 640, 1007
Fsp4HI GCNGC 9 cut(s) 36, 100, 339, 342, 345, 348, 351, 684, 735
FspBI CTAG 4 cut(s) 591, 938, 1290, 1425
GlaI GCGC 1 cut(s) 1222
GluI GCNGC 9 cut(s) 36, 100, 339, 342, 345, 348, 351, 684, 735
GsaI CCCAGC 1 cut(s) 861
HaeIII GGCC 6 cut(s) 112, 512, 524, 788, 916, 1082
HapII CCGG 6 cut(s) 152, 407, 578, 653, 1104, 1275
HhaI GCGC 1 cut(s) 1223
Hin1II CATG 8 cut(s) 106, 313, 760, 814, 898, 1023, 1162, 1433
Hin6I GCGC 1 cut(s) 1221
HinP1I GCGC 1 cut(s) 1221
HincII GTYRAC 2 cut(s) 484, 852
HindII GTYRAC 2 cut(s) 484, 852
HinfI GANTC 7 cut(s) 211, 455, 499, 535, 555, 962, 1047
HpaII CCGG 6 cut(s) 152, 407, 578, 653, 1104, 1275
HphI GGTGA 4 cut(s) 259, 396, 454, 1385
Hpy166II GTNNAC 5 cut(s) 242, 484, 646, 852, 1315
Hpy188I TCNGA 4 cut(s) 73, 363, 771, 1076
Hpy188III TCNNGA 9 cut(s) 131, 169, 202, 377, 697, 747, 895, 1203, 1327
Hpy8I GTNNAC 5 cut(s) 242, 484, 646, 852, 1315
HpyAV CCTTC 4 cut(s) 472, 485, 724, 1123
HpyCH4III ACNGT 4 cut(s) 622, 715, 871, 1144
HpyCH4V TGCA 9 cut(s) 293, 313, 344, 552, 631, 737, 830, 959, 1298
HpyF3I CTNAG 4 cut(s) 398, 539, 816, 822
Hsp92II CATG 8 cut(s) 106, 313, 760, 814, 898, 1023, 1162, 1433
HspAI GCGC 1 cut(s) 1221
Ksp22I TGATCA 1 cut(s) 1432
Kzo9I GATC 4 cut(s) 693, 717, 1365, 1432
LmnI GCTCC 3 cut(s) 358, 364, 749
Lsp1109I GCAGC 9 cut(s) 22, 111, 325, 328, 334, 337, 356, 695, 721
LweI GCATC 4 cut(s) 618, 679, 752, 1371
MaeI CTAG 4 cut(s) 591, 938, 1290, 1425
MaeIII GTNAC 6 cut(s) 377, 402, 616, 791, 1106, 1420
MalI GATC 4 cut(s) 695, 719, 1367, 1434
MboI GATC 4 cut(s) 693, 717, 1365, 1432
MhlI GDGCHC 2 cut(s) 754, 1274
MlsI TGGCCA 2 cut(s) 524, 788
MluCI AATT 2 cut(s) 257, 1406
MluNI TGGCCA 2 cut(s) 524, 788
MlyI GAGTC 3 cut(s) 449, 529, 971
Mox20I TGGCCA 2 cut(s) 524, 788
MroXI GAANNNNTTC 1 cut(s) 320
MscI TGGCCA 2 cut(s) 524, 788
MseI TTAA 1 cut(s) 417
Msp20I TGGCCA 2 cut(s) 524, 788
MspA1I CMGCKG 3 cut(s) 230, 347, 686
MspCI CTTAAG 1 cut(s) 416
MspI CCGG 6 cut(s) 152, 407, 578, 653, 1104, 1275
MspR9I CCNGG 7 cut(s) 96, 408, 653, 654, 722, 975, 1275
Mva1269I GAATGC 2 cut(s) 62, 1223
MvaI CCWGG 3 cut(s) 96, 722, 975
NciI CCSGG 4 cut(s) 408, 653, 654, 1275
NdeI CATATG 1 cut(s) 777
NdeII GATC 4 cut(s) 693, 717, 1365, 1432
NlaIII CATG 8 cut(s) 106, 313, 760, 814, 898, 1023, 1162, 1433
NlaIV GGNNCC 2 cut(s) 413, 658
NmuCI GTSAC 5 cut(s) 377, 402, 616, 791, 1420
NspI RCATGY 1 cut(s) 814
PaeR7I CTCGAG 1 cut(s) 131
PagI TCATGA 1 cut(s) 894
PceI AGGCCT 2 cut(s) 916, 1082
PctI GAATGC 2 cut(s) 62, 1223
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 4 cut(s) 211, 499, 555, 1047
PflMI CCANNNNNTGG 1 cut(s) 1125
PfoI TCCNGGA 1 cut(s) 720
PkrI GCNGC 9 cut(s) 37, 101, 340, 343, 346, 349, 352, 685, 736
PleI GAGTC 3 cut(s) 449, 529, 970
PpsI GAGTC 3 cut(s) 449, 529, 970
PpuMI RGGWCCY 1 cut(s) 934
Psp5II RGGWCCY 1 cut(s) 934
Psp6I CCWGG 3 cut(s) 94, 720, 973
PspEI GGTNACC 1 cut(s) 402
PspFI CCCAGC 1 cut(s) 857
PspGI CCWGG 3 cut(s) 94, 720, 973
PspN4I GGNNCC 2 cut(s) 413, 658
PspPI GGNCC 3 cut(s) 242, 934, 1259
PspPPI RGGWCCY 1 cut(s) 934
PsrI GAACNNNNNNTAC 2 cut(s) 1154, 1186
PstI CTGCAG 2 cut(s) 346, 554
PstNI CAGNNNCTG 1 cut(s) 350
PvuII CAGCTG 2 cut(s) 347, 686
RsaI GTAC 5 cut(s) 185, 396, 440, 868, 1016
RsaNI GTAC 5 cut(s) 184, 395, 439, 867, 1015
SalI GTCGAC 1 cut(s) 482
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 9 cut(s) 36, 100, 339, 342, 345, 348, 351, 684, 735
Sau3AI GATC 4 cut(s) 693, 717, 1365, 1432
Sau96I GGNCC 3 cut(s) 242, 934, 1259
ScaI AGTACT 3 cut(s) 396, 868, 1016
SchI GAGTC 3 cut(s) 449, 529, 971
ScrFI CCNGG 7 cut(s) 96, 408, 653, 654, 722, 975, 1275
SduI GDGCHC 2 cut(s) 754, 1274
SfaNI GCATC 4 cut(s) 618, 679, 752, 1371
SfcI CTRYAG 4 cut(s) 342, 550, 621, 667
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 3 cut(s) 242, 934, 1259
SlaI CTCGAG 1 cut(s) 131
SmaI CCCGGG 1 cut(s) 654
SmlI CTYRAG 3 cut(s) 131, 416, 1201
SmoI CTYRAG 3 cut(s) 131, 416, 1201
Sse9I AATT 2 cut(s) 257, 1406
SseBI AGGCCT 2 cut(s) 916, 1082
SsiI CCGC 1 cut(s) 228
SspMI CTAG 4 cut(s) 591, 938, 1290, 1425
StuI AGGCCT 2 cut(s) 916, 1082
StyD4I CCNGG 7 cut(s) 94, 406, 651, 652, 720, 973, 1273
StyI CCWWGG 3 cut(s) 930, 1119, 1356
TaaI ACNGT 4 cut(s) 622, 715, 871, 1144
TaqI TCGA 4 cut(s) 132, 298, 483, 1095
TaqII GACCGA 1 cut(s) 1103
TasI AATT 2 cut(s) 257, 1406
TatI WGTACW 3 cut(s) 394, 866, 1014
TfiI GAWTC 4 cut(s) 211, 499, 555, 1047
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 2 cut(s) 295, 796
TseFI GTSAC 5 cut(s) 377, 402, 616, 791, 1420
TseI GCWGC 9 cut(s) 35, 99, 338, 341, 344, 347, 350, 683, 734
Tsp45I GTSAC 5 cut(s) 377, 402, 616, 791, 1420
TspDTI ATGAA 6 cut(s) 191, 491, 883, 911, 1025, 1175
TspMI CCCGGG 1 cut(s) 652
TspRI CASTG 2 cut(s) 295, 796
Van91I CCANNNNNTGG 1 cut(s) 1125
Vha464I CTTAAG 1 cut(s) 416
VpaK11BI GGWCC 3 cut(s) 242, 934, 1259
XapI RAATTY 1 cut(s) 257
XceI RCATGY 1 cut(s) 814
XhoI CTCGAG 1 cut(s) 131
XmaI CCCGGG 1 cut(s) 652
XmiI GTMKAC 1 cut(s) 483
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 4 cut(s) 591, 938, 1290, 1425
ZrmI AGTACT 3 cut(s) 396, 868, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.