Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003901

Physical Location & Seq

Genomic Coordinates Reverse (-)

12373073 .. 12373621

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGGAGCAGATGAGGATAAACGTGGAGCGATAGCTGCCCTTCGTAGTACAATTGAGCAGGCTGATGAAATGATCAGAAAGGAGGTTCTTACTGCAAAGTATCCAATAAATGAGAAAGTGGTAACTACTTTCATAGAACATGAACTGAAGGAGGCGGATTCAATGATAGCCGAAGAAGCTCAGTATCCTGGAGAAGCACACAAAAGCTTCGGCTCTGGTTGTTGTCTATCCAGCATTGCTGAAGATAAGAACCCTGTGGCTTGTTTGCAAAGCGAATATGAGAAGGTGCAGTATGAATTGGAGAACGTGAAGAAGAAGGCACAAATCATTGAGAATAAGGTTAAAGTTCGTATAGATGGTTATGAGAGGCGAGCTAAAGATGTGCTTTGGCCAAAAATTGAGAAAAAGTTCAAGCAAATGGACACAGCCACAAAAGAACTTGAGTGCTTCCAAGCTTTACAGAAGCTAGAAAAATCAGCAGCAACGAGCCCGATAAATATCATGTGGGAGGAAGTTCAGAAACAAAAGGAGCTCGAGCGAACTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009889 GO:0009987 GO:0010204 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032502 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Myb_Cef Myb_DNA-binding

Protein Analysis

183

Amino Acids

20.83

Weight (kDa)

5.48

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09770
fragaria_vesca	FvH4_3g19200 FvH4_3g19210 FvH4_6g01950
malus_domestica	MD04G1229500.v1.1 MD12G1246400.v1.1
prunus_persica	Prupe.6G349400_v2.0.a1
pyrus_communis	pycom04g20330 pycom04g20340 pycom12g22600
rosa_chinensis	RchiOBHm_Chr3g0449801 RchiOBHm_Chr5g0032281
rosa_laevigata	RLG00000025799 RLG00000033377
rosa_multiflora	Rmu_co8441867.1_g000001 Rmu_sc0000610.1_g000011 Rmu_sc0013983.1_g000008 Rmu_ssc0000013.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048170 Rroxscaffold_1G00048180 Rroxscaffold_6G00427620
rosa_rugosa	Rorug02G0623400 Rorug02G0623400 Rorug05G0130300
rosa_samantha	Rh3AG021600 Rh3BG022300 Rh3CG020900 Rh3DG022000 Rh5BG224900 Rh5CG250300 Rh5DG229500 Rh5DG229600
rosa_wichuraiana	Rw3G001770 Rw5G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	389
AcuI	CTGAAG	2 cut(s)	167, 261
AfaI	GTAC	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	162, 412
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	7 cut(s)	35, 179, 207, 374, 455, 466, 532
AluI	AGCT	7 cut(s)	35, 179, 207, 374, 455, 466, 532
Alw21I	GWGCWC	1 cut(s)	534
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	1 cut(s)	389
ApeKI	GCWGC	2 cut(s)	35, 479
Asp700I	GAANNNNTTC	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	533
BalI	TGGCCA	1 cut(s)	391
BanII	GRGCYC	2 cut(s)	491, 534
Bbv12I	GWGCWC	1 cut(s)	534
BbvI	GCAGC	2 cut(s)	22, 491
BccI	CCATC	1 cut(s)	350
BciT130I	CCWGG	1 cut(s)	189
BciVI	GTATCC	2 cut(s)	111, 195
BclI	TGATCA	1 cut(s)	72
BfaI	CTAG	1 cut(s)	467
BfuI	GTATCC	2 cut(s)	111, 195
BisI	GCNGC	2 cut(s)	36, 480
BlsI	GCNGC	2 cut(s)	37, 481
Bme1390I	CCNGG	1 cut(s)	189
BmeT110I	CYCGRG	1 cut(s)	533
BmrFI	CCNGG	1 cut(s)	189
BpmI	CTGGAG	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	461
BsaBI	GATNNNNATC	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	234
Bse8I	GATNNNNATC	1 cut(s)	497
BseBI	CCWGG	1 cut(s)	189
BseJI	GATNNNNATC	1 cut(s)	497
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	194
BseXI	GCAGC	2 cut(s)	22, 491
BsgI	GTGCAG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	391
BsiHKAI	GWGCWC	1 cut(s)	534
BsiHKCI	CYCGRG	1 cut(s)	533
BsnI	GGCC	1 cut(s)	391
BsoBI	CYCGRG	1 cut(s)	533
Bsp1286I	GDGCHC	2 cut(s)	491, 534
Bsp143I	GATC	1 cut(s)	72
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	1 cut(s)	391
BspCNI	CTCAG	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	234
BssMI	GATC	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	60, 372
BstDEI	CTNAG	1 cut(s)	180
BstKTI	GATC	1 cut(s)	75
BstMBI	GATC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 176
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstV1I	GCAGC	2 cut(s)	22, 491
BsuI	GTATCC	2 cut(s)	111, 195
BsuRI	GGCC	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	60, 372
Csp6I	GTAC	1 cut(s)	48
CviAII	CATG	2 cut(s)	140, 502
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
EaeI	YGGCCR	1 cut(s)	389
EciI	GGCGGA	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	532
Eco24I	GRGCYC	2 cut(s)	491, 534
Eco53kI	GAGCTC	1 cut(s)	532
Eco57I	CTGAAG	2 cut(s)	167, 261
Eco88I	CYCGRG	1 cut(s)	533
EcoICRI	GAGCTC	1 cut(s)	532
EcoRII	CCWGG	1 cut(s)	187
EcoT38I	GRGCYC	2 cut(s)	491, 534
FaeI	CATG	2 cut(s)	143, 505
FaiI	YATR	8 cut(s)	134, 141, 279, 294, 353, 363, 503, 547
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FatI	CATG	2 cut(s)	139, 501
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	36, 480
FriOI	GRGCYC	2 cut(s)	491, 534
Fsp4HI	GCNGC	2 cut(s)	36, 480
FspBI	CTAG	1 cut(s)	467
GluI	GCNGC	2 cut(s)	36, 480
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	391
Hin1II	CATG	2 cut(s)	143, 505
HindIII	AAGCTT	2 cut(s)	205, 453
HinfI	GANTC	1 cut(s)	158
Hpy188I	TCNGA	2 cut(s)	77, 519
HpyAV	CCTTC	4 cut(s)	50, 142, 277, 310
HpyCH4IV	ACGT	2 cut(s)	22, 306
HpyCH4V	TGCA	3 cut(s)	95, 268, 289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 176
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	2 cut(s)	22, 306
Hsp92II	CATG	2 cut(s)	143, 505
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	72
LmnI	GCTCC	3 cut(s)	5, 26, 529
LpnPI	CCDG	6 cut(s)	44, 174, 201, 201, 244, 267
Lsp1109I	GCAGC	2 cut(s)	22, 491
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	2 cut(s)	22, 306
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	4 cut(s)	185, 254, 322, 325
MfeI	CAATTG	1 cut(s)	51
MhlI	GDGCHC	2 cut(s)	491, 534
MlsI	TGGCCA	1 cut(s)	391
MluCI	AATT	3 cut(s)	51, 296, 396
MluNI	TGGCCA	1 cut(s)	391
MnlI	CCTC	5 cut(s)	7, 76, 145, 360, 502
Mox20I	TGGCCA	1 cut(s)	391
MroXI	GAANNNNTTC	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	391
MseI	TTAA	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	391
MspR9I	CCNGG	1 cut(s)	189
MunI	CAATTG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	35, 176
NdeII	GATC	1 cut(s)	72
NlaIII	CATG	2 cut(s)	143, 505
PaeR7I	CTCGAG	1 cut(s)	533
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	1 cut(s)	158
PfoI	TCCNGGA	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	37, 481
Psp124BI	GAGCTC	1 cut(s)	534
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspXI	VCTCGAGB	1 cut(s)	533
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	2 cut(s)	36, 480
Sau3AI	GATC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	2 cut(s)	491, 534
Sfr274I	CTCGAG	1 cut(s)	533
SlaI	CTCGAG	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	440, 533
SmoI	CTYRAG	2 cut(s)	440, 533
Sse9I	AATT	3 cut(s)	51, 296, 396
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	1 cut(s)	467
SstI	GAGCTC	1 cut(s)	534
StyD4I	CCNGG	1 cut(s)	187
TaiI	ACGT	2 cut(s)	25, 309
TaqI	TCGA	1 cut(s)	534
TasI	AATT	3 cut(s)	51, 296, 396
TatI	WGTACW	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseI	GCWGC	2 cut(s)	35, 479
TspDTI	ATGAA	4 cut(s)	81, 121, 156, 309
XhoI	CTCGAG	1 cut(s)	533
XmnI	GAANNNNTTC	1 cut(s)	407
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.