Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003901

Physical Location & Seq

Genomic Coordinates Reverse (-)

1433578 .. 1439159

Gene Structure 5582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG021600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2877 bp

ATGAGGATCATGATAAAGGGCGGCGTGTGGAAGAACACGGAGGATGAGATCCTCAAGGCCGCCGTTATGAAGTACGGCAAGAACCAGTGGGCTCGAATCTCCTCCCTCCTCGTTCGCAAATCCGCCAAGCAGTGCAAGGCTCGCTGGTACGAGTGGCTCGATCCCTCCATCAAAAAGACCGAGTGGACTAGAGAAGAGGATGAGAAACTTCTTCATCTTGCTAAGCTCATGCCTACGCAGTGGAGAACAATTGCCCCAATCGTTGGTCGTACTCCATCTCAATGCCTTGAAAGGTACGAGAAGCTCCTTGATGCAGCCTGTGTCAAGGATGAGAACTATGAACCAGGTGATGATCCCCGAAAATTGCGGCCTGGAGAGATTGACCCCAATCCTGAGTCTAAACCTGCTCGTCCGGATCCTGTTGATATGGATGAGGATGAGAAGGAAATGCTTTCTGAGGCACGAGCTCGGTTGGCCAACACCAGGGGAAAGAAGGCCAAAAGAAAGGCTAGAGAGAAACAGCTGGAGGAAGCCAGAAGGCTTGCTTCCCTACAGAAAAGGAGAGAATTAAAGGCTGCTGGGATTGATAATAGGCAGCGGAAGAGGAAAAGGAAGGGGATAGACTACAACGCTGAAATTCCCTTTGAGAAGAAGCCTCCTCCAGGCTTTTATGATGTTGCTGATGAAGATAGACCAGTTGACCAGCCTCAGTTCCCTACGACTATTGAGGAGCTTGAAGGGAAGAGAAGGGTTGATGTGGAAGCTCAGTTGAGGAAACAAGATATCGCAAAGAATAAAATTGCTCAGAGGCAGGATGCTCCATCAGCGATATTGCAAGCCAACAAGTTGAATGATCCAGAAACTGTTAGGAAGAGATCAAAGCTTATGCTTCCTGCACCTCAGATTTCAGATCATGAGTTGGAGGAAATTGCAAAGATGGGCTATGCAAATGATCTTGCTGGGAGTGAACTCACAGAAGGAAGTGGTGCAACTCGAGCCCTTCTTGCAAATTATGCCCAGACACCAAGGCTGGGAATGACACCTTCACGTACGCCCCAAAGAACACCTGCTGGTAAAGGTGATGCTATCATGATGGAAGCTTCAAATTTGGCCATGTTGAGAGAGTCTCAGACACCATTGTTAGGAGGAGAGAATCCACAGTTGCACCCATCAGATTTTTCTGGTGTCACTCCTAGAAAAAAGGAAATCCAGACGCCAAATTTGATGCTTACTCCTTCAACTCCTGGAGGTGCAGGTCTTACTCCTAGGATTGGCTTGACCCCGGCAAGGGATTCTTTTGGCATGACACCGAAGGGGACTCCAATGAGGGACGAGCTTCGTATCAATGAAGATGTTGATATGCATGATAGTGCAAAGATGGAGCATCGGAGACAGGCTGAGTTAAGGAAAAACTTGCAGATGGGTCTAAGCAAGTTACCACAGCCCAAAAATGAGTACCAGATAGTCATGCAGCCAGTTCCAGAAGATAATGAAGAACCTGAGGAGAAGATTGAAGAAGATATGTCTGATAGGATTGCTAGAGAAAGGGCTGAGGAAGAAGCACGACAGCAGGCATTACTTAGGAAGAGATCAAAAGTACTGCAGAGGGAGCTCCCTAGGCCTCCTGCTCCTTCAGTGGAATCTCTGAGAAAGTCCTTGTTGAGAGCAGATGAAGATAAGAGTAAAGTTGTTCCTCCTACTTCAATTGAGCAGGCCAATGAAATGATTACGAAGGAGCTTCTTAGTTTACTAGAGCATGATAATGTGAAATACCCACTTGATGAGAAAGTAGATAAGCGGAAAAAGAAAGGTACCAAGCGCAGTGCAAATGGCTCTACTCCTACTGTCCCTGAGATAGAAGACTTTGAAGAAGATGAACTGAAGGAGGCTGATTCAATGATAAAGGAAGAGGTTGAGTATCTTCGCGTTGCAATGGGACATGAAGATAAATCCCTCGATGAATTTGTTGAAGTACACAAGACATGCATGAATGATTTCATGTTTTTTCCTAGGCGCAATGCTTATGGTGCATCAAGTATTGCTGGAAATGAGGAGAAACTTGAGGCTTTGCAGAATGAGTTTGAGAATGTGAAGAAGAAGTTGGATGATGATCTTGGGAAGGCAGTGAGCCTTGAAAAAAAGGTTAAAGTTCGAACACATGGTTATGAGATGCGAGCTAAAGAAGTTCATTGGCCAAAAATTGAGGAAACTTTCAAGCAGTTGGACACTGCTGAAAAAGAACTCGAGTGCTTCCGTGCTCTGCAGAAGCAAGAACAACTTGCAGCCTCACACCGGATAAACAATCTTTGGGAAGAAGTTCAAAAACAAAAGGAGCTTGAGCGAACTTTACAAAAGCGGTATGGGGGTCTTCTAGTGGAGGTGGAAAGGGTACAACACCTTAGAGAAAAATACATAGCGCAAGAACAAGAACAAAAAGAAGTTGCAGCCAGAAATGATCTTGAGTTGGCTGATGCTGCAGCAGATGTGGCCGTTGTGCAGTCAACTGTTAATACAAGTGCCTCAGATGAGCTTGCTGCATCTCATGGTGAAACTACTGATCCACAAGTGGATGAGGGTGAGAATGACATACCATTACAAGGTACAAGTGGTGAAGGTTCTGATACTCACCTTTCTACCTCAGATGGGATCTACCCCAGTGGTGTTGCAGCTCAAGACTCTGTTAGCAATGGAGATGCTGTTGTTTCAGGCACTGTGGATATTGTGCTTCCTACTGAAAAGCTAACAAGTACCGATGTGGCCAATGACCAAGTTGTTGGGGCAGAAGTAGCCGGAGATGATGGTCTTGTCAGTGCAGATGCCACCACTGTTTCTGCTGAGGTGGTCGATTTGGCTGAAAATGCACCAACCCAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009889 GO:0009987 GO:0010204 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032502 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Myb_Cef Myb_DNA-binding

Protein Analysis

958

Amino Acids

107.73

Weight (kDa)

5.4

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	8 - 53	4.4e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	10 - 70	7.5e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	59 - 103	6e-10	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	62 - 109	5.6e-09	Myb-like DNA-binding domain
Myb_Cef	PF11831	405 - 652	1.2e-62	pre-mRNA splicing factor component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09770
fragaria_vesca	FvH4_3g19200 FvH4_3g19210 FvH4_6g01950
malus_domestica	MD04G1229500.v1.1 MD12G1246400.v1.1
prunus_persica	Prupe.6G349400_v2.0.a1
pyrus_communis	pycom04g20330 pycom04g20340 pycom12g22600
rosa_chinensis	RchiOBHm_Chr3g0449801 RchiOBHm_Chr5g0032281
rosa_laevigata	RLG00000025799 RLG00000033377
rosa_multiflora	Rmu_co8441867.1_g000001 Rmu_sc0000610.1_g000011 Rmu_sc0013983.1_g000008 Rmu_ssc0000013.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048170 Rroxscaffold_1G00048180 Rroxscaffold_6G00427620
rosa_rugosa	Rorug02G0623400 Rorug02G0623400 Rorug05G0130300
rosa_samantha	Rh3AG021600 Rh3BG022300 Rh3CG020900 Rh3DG022000 Rh5BG224900 Rh5CG250300 Rh5DG229500 Rh5DG229600
rosa_wichuraiana	Rw3G001770 Rw5G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1075
Acc36I	ACCTGC	3 cut(s)	412, 1075, 1244
Acc65I	GGTACC	1 cut(s)	1811
AccB1I	GGYRCC	1 cut(s)	1811
AccB7I	CCANNNNNTGG	1 cut(s)	263
AccII	CGCG	1 cut(s)	1926
AccIII	TCCGGA	1 cut(s)	412
AciI	CCGC	7 cut(s)	21, 60, 123, 367, 598, 1798, 2356
AclWI	GGATC	9 cut(s)	14, 43, 155, 347, 410, 423, 848, 2552, 2654
AcoI	YGGCCR	5 cut(s)	474, 1110, 2192, 2487, 2757
AcsI	RAATTY	4 cut(s)	636, 1105, 1219, 1961
AcuI	CTGAAG	2 cut(s)	1617, 1901
AcyI	GRCGYC	1 cut(s)	1214
AjnI	CCWGG	5 cut(s)	343, 370, 482, 661, 1243
AjuI	GAANNNNNNNTTGG	2 cut(s)	2084, 2116
Alw21I	GWGCWC	3 cut(s)	469, 1614, 2260
Alw26I	GTCTC	2 cut(s)	1131, 1384
AlwI	GGATC	9 cut(s)	14, 43, 155, 347, 410, 423, 848, 2552, 2654
AlwNI	CAGNNNCTG	2 cut(s)	863, 2711
Ama87I	CYCGRG	2 cut(s)	993, 2243
Aor13HI	TCCGGA	1 cut(s)	412
ApoI	RAATTY	4 cut(s)	636, 1105, 1219, 1961
ArsI	GACNNNNNNTTYG	2 cut(s)	1204, 1236
Asp700I	GAANNNNTTC	2 cut(s)	1994, 2316
Asp718I	GGTACC	1 cut(s)	1811
AspA2I	CCTAGG	3 cut(s)	1265, 1616, 2009
AspLEI	GCGC	3 cut(s)	1821, 2016, 2419
AsuC2I	CCSGG	1 cut(s)	1283
AsuHPI	GGTGA	6 cut(s)	359, 1091, 2558, 2588, 2618, 2621
AsuII	TTCGAA	1 cut(s)	2152
AvaI	CYCGRG	2 cut(s)	993, 2243
AvrII	CCTAGG	3 cut(s)	1265, 1616, 2009
AxyI	CCTNAGG	1 cut(s)	1500
BalI	TGGCCA	4 cut(s)	476, 1112, 2194, 2759
BamHI	GGATCC	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	1811
BanII	GRGCYC	4 cut(s)	94, 469, 1000, 1614
BauI	CACGAG	1 cut(s)	462
BbsI	GAAGAC	2 cut(s)	1866, 2360
Bbv12I	GWGCWC	3 cut(s)	469, 1614, 2260
BbvCI	CCTCAGC	2 cut(s)	1551, 2835
BceAI	ACGGC	3 cut(s)	47, 91, 2474
BciT130I	CCWGG	5 cut(s)	345, 372, 484, 663, 1245
BcnI	CCSGG	1 cut(s)	1283
BcoDI	GTCTC	2 cut(s)	1131, 1384
BfaI	CTAG	9 cut(s)	189, 510, 1194, 1266, 1539, 1617, 1751, 2010, 2372
BfmI	CTRYAG	4 cut(s)	551, 1601, 2261, 2475
BfuAI	ACCTGC	3 cut(s)	412, 1075, 1244
BlnI	CCTAGG	3 cut(s)	1265, 1616, 2009
BlpI	GCTNAGC	1 cut(s)	222
BmcAI	AGTACT	1 cut(s)	1599
Bme1390I	CCNGG	6 cut(s)	345, 372, 484, 663, 1245, 1283
BmeT110I	CYCGRG	2 cut(s)	993, 2243
BmiI	GGNNCC	2 cut(s)	417, 1813
BmrFI	CCNGG	6 cut(s)	345, 372, 484, 663, 1245, 1283
BmrI	ACTGGG	1 cut(s)	2649
BmuI	ACTGGG	1 cut(s)	2649
BpiI	GAAGAC	2 cut(s)	1866, 2360
BplI	GAGNNNNNCTC	2 cut(s)	1111, 1143
BpmI	CTGGAG	4 cut(s)	393, 545, 645, 1266
Bpu10I	CCTNAGC	2 cut(s)	1551, 2835
Bpu1102I	GCTNAGC	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	2152
BpuEI	CTTGAG	5 cut(s)	38, 2081, 2357, 2480, 2655
BpuMI	CCSGG	1 cut(s)	1283
BsaAI	YACGTR	1 cut(s)	1049
BsaBI	GATNNNNATC	1 cut(s)	2109
BsaHI	GRCGYC	1 cut(s)	1214
BsaJI	CCNNGG	6 cut(s)	483, 1025, 1265, 1281, 1616, 2009
BsaWI	WCCGGW	2 cut(s)	412, 2292
BsaXI	ACNNNNNCTCC	2 cut(s)	2682, 2712
Bse1I	ACTGG	4 cut(s)	85, 695, 1475, 2655
Bse21I	CCTNAGG	1 cut(s)	1500
Bse3DI	GCAATG	3 cut(s)	1938, 2023, 2692
Bse8I	GATNNNNATC	1 cut(s)	2109
BseAI	TCCGGA	1 cut(s)	412
BseBI	CCWGG	5 cut(s)	345, 372, 484, 663, 1245
BseDI	CCNNGG	6 cut(s)	483, 1025, 1265, 1281, 1616, 2009
BseGI	GGATG	8 cut(s)	49, 205, 334, 436, 442, 820, 2110, 2575
BseJI	GATNNNNATC	1 cut(s)	2109
BseMI	GCAATG	3 cut(s)	1938, 2023, 2692
BseNI	ACTGG	4 cut(s)	85, 695, 1475, 2655
BseRI	GAGGAG	7 cut(s)	91, 98, 648, 743, 1161, 1517, 2066
BseYI	CCCAGC	3 cut(s)	578, 959, 1030
BsgI	GTGCAG	4 cut(s)	879, 1272, 2516, 2832
Bsh1236I	CGCG	1 cut(s)	1926
BshNI	GGYRCC	1 cut(s)	1811
BsiHKAI	GWGCWC	3 cut(s)	469, 1614, 2260
BsiHKCI	CYCGRG	2 cut(s)	993, 2243
BsiSI	CCGG	4 cut(s)	413, 1283, 2293, 2790
BsiWI	CGTACG	1 cut(s)	1049
BslFI	GGGAC	4 cut(s)	1330, 1343, 1832, 1950
BsmAI	GTCTC	2 cut(s)	1131, 1384
BsmFI	GGGAC	4 cut(s)	1330, 1343, 1832, 1950
BsoBI	CYCGRG	2 cut(s)	993, 2243
Bsp119I	TTCGAA	1 cut(s)	2152
Bsp1286I	GDGCHC	5 cut(s)	94, 469, 1000, 1614, 2260
Bsp13I	TCCGGA	1 cut(s)	412
Bsp1720I	GCTNAGC	1 cut(s)	222
BspACI	CCGC	7 cut(s)	21, 60, 123, 367, 598, 1798, 2356
BspEI	TCCGGA	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	1926
BspHI	TCATGA	3 cut(s)	9, 913, 1089
BspLI	GGNNCC	2 cut(s)	417, 1813
BspMAI	CTGCAG	3 cut(s)	1605, 2265, 2479
BspMI	ACCTGC	3 cut(s)	412, 1075, 1244
BspPI	GGATC	9 cut(s)	14, 43, 155, 347, 410, 423, 848, 2552, 2654
BspT104I	TTCGAA	1 cut(s)	2152
BspT107I	GGYRCC	1 cut(s)	1811
BsrDI	GCAATG	3 cut(s)	1938, 2023, 2692
BsrI	ACTGG	4 cut(s)	85, 695, 1475, 2655
BssECI	CCNNGG	6 cut(s)	483, 1025, 1265, 1281, 1616, 2009
BssNI	GRCGYC	1 cut(s)	1214
BssSI	CACGAG	1 cut(s)	462
BssT1I	CCWWGG	4 cut(s)	1025, 1265, 1616, 2009
Bst2BI	CACGAG	1 cut(s)	462
Bst2UI	CCWGG	5 cut(s)	345, 372, 484, 663, 1245
Bst4CI	ACNGT	6 cut(s)	865, 1161, 1846, 2506, 2713, 2827
Bst6I	CTCTTC	6 cut(s)	189, 596, 737, 866, 1580, 1902
BstACI	GRCGYC	1 cut(s)	1214
BstAPI	GCANNNNNTGC	1 cut(s)	1013
BstBAI	YACGTR	1 cut(s)	1049
BstBI	TTCGAA	1 cut(s)	2152
BstC8I	GCNNGC	7 cut(s)	142, 543, 837, 1572, 1713, 2175, 2532
BstENI	CCTNNNNNAGG	1 cut(s)	660
BstF5I	GGATG	8 cut(s)	49, 205, 334, 436, 442, 820, 2110, 2575
BstFNI	CGCG	1 cut(s)	1926
BstHHI	GCGC	3 cut(s)	1821, 2016, 2419
BstMAI	GTCTC	2 cut(s)	1131, 1384
BstNI	CCWGG	5 cut(s)	345, 372, 484, 663, 1245
BstNSI	RCATGY	1 cut(s)	1986
BstSCI	CCNGG	6 cut(s)	343, 370, 482, 661, 1243, 1281
BstSFI	CTRYAG	4 cut(s)	551, 1601, 2261, 2475
BstUI	CGCG	1 cut(s)	1926
BstV2I	GAAGAC	2 cut(s)	1866, 2360
BstX2I	RGATCY	3 cut(s)	48, 415, 2646
BstXI	CCANNNNNNTGG	1 cut(s)	2774
BstYI	RGATCY	3 cut(s)	48, 415, 2646
Bsu36I	CCTNAGG	1 cut(s)	1500
BtsCI	GGATG	8 cut(s)	49, 205, 334, 436, 442, 820, 2110, 2575
BtsI	GCAGTG	5 cut(s)	137, 245, 1828, 2130, 2226
BveI	ACCTGC	3 cut(s)	412, 1075, 1244
Cac8I	GCNNGC	7 cut(s)	142, 543, 837, 1572, 1713, 2175, 2532
CaiI	CAGNNNCTG	2 cut(s)	863, 2711
CciI	TCATGA	3 cut(s)	9, 913, 1089
CfoI	GCGC	3 cut(s)	1821, 2016, 2419
CseI	GACGC	1 cut(s)	1222
CsiI	ACCWGGT	1 cut(s)	343
EaeI	YGGCCR	5 cut(s)	474, 1110, 2192, 2487, 2757
Eam1104I	CTCTTC	6 cut(s)	189, 596, 737, 866, 1580, 1902
EarI	CTCTTC	6 cut(s)	189, 596, 737, 866, 1580, 1902
EciI	GGCGGA	1 cut(s)	112
Ecl136II	GAGCTC	2 cut(s)	467, 1612
Eco130I	CCWWGG	4 cut(s)	1025, 1265, 1616, 2009
Eco147I	AGGCCT	1 cut(s)	1621
Eco24I	GRGCYC	4 cut(s)	94, 469, 1000, 1614
Eco32I	GATATC	1 cut(s)	784
Eco53kI	GAGCTC	2 cut(s)	467, 1612
Eco57I	CTGAAG	2 cut(s)	1617, 1901
Eco81I	CCTNAGG	1 cut(s)	1500
Eco88I	CYCGRG	2 cut(s)	993, 2243
EcoICRI	GAGCTC	2 cut(s)	467, 1612
EcoNI	CCTNNNNNAGG	1 cut(s)	660
EcoRII	CCWGG	5 cut(s)	343, 370, 482, 661, 1243
EcoRV	GATATC	1 cut(s)	784
EcoT14I	CCWWGG	4 cut(s)	1025, 1265, 1616, 2009
EcoT22I	ATGCAT	2 cut(s)	1365, 1988
EcoT38I	GRGCYC	4 cut(s)	94, 469, 1000, 1614
ErhI	CCWWGG	4 cut(s)	1025, 1265, 1616, 2009
FalI	AAGNNNNNCTT	6 cut(s)	529, 561, 1279, 1311, 2262, 2294
FaqI	GGGAC	4 cut(s)	1330, 1343, 1832, 1950
FokI	GGATG	8 cut(s)	56, 212, 341, 443, 449, 827, 2117, 2582
FriOI	GRGCYC	4 cut(s)	94, 469, 1000, 1614
FspBI	CTAG	9 cut(s)	189, 510, 1194, 1266, 1539, 1617, 1751, 2010, 2372
GlaI	GCGC	3 cut(s)	1820, 2015, 2418
GsaI	CCCAGC	3 cut(s)	582, 963, 1034
GsuI	CTGGAG	4 cut(s)	393, 545, 645, 1266
HapII	CCGG	4 cut(s)	413, 1283, 2293, 2790
HgaI	GACGC	1 cut(s)	1222
HhaI	GCGC	3 cut(s)	1821, 2016, 2419
Hin1I	GRCGYC	1 cut(s)	1214
Hin6I	GCGC	3 cut(s)	1819, 2014, 2417
HinP1I	GCGC	3 cut(s)	1819, 2014, 2417
HincII	GTYRAC	2 cut(s)	700, 2502
HindII	GTYRAC	2 cut(s)	700, 2502
HindIII	AAGCTT	2 cut(s)	881, 1098
HinfI	GANTC	9 cut(s)	96, 395, 1124, 1153, 1292, 1318, 1640, 1892, 2675
HpaII	CCGG	4 cut(s)	413, 1283, 2293, 2790
HphI	GGTGA	6 cut(s)	359, 1091, 2558, 2588, 2618, 2621
Hpy166II	GTNNAC	6 cut(s)	186, 700, 968, 1748, 1975, 2502
Hpy8I	GTNNAC	6 cut(s)	186, 700, 968, 1748, 1975, 2502
HpyCH4III	ACNGT	6 cut(s)	865, 1161, 1846, 2506, 2713, 2827
HpyCH4IV	ACGT	1 cut(s)	1048
HpySE526I	ACGT	1 cut(s)	1048
Hsp92I	GRCGYC	1 cut(s)	1214
HspAI	GCGC	3 cut(s)	1819, 2014, 2417
Kpn2I	TCCGGA	1 cut(s)	412
KpnI	GGTACC	1 cut(s)	1815
LmnI	GCTCC	9 cut(s)	309, 730, 823, 1381, 1609, 1617, 1633, 1735, 2332
MabI	ACCWGGT	1 cut(s)	343
MaeI	CTAG	9 cut(s)	189, 510, 1194, 1266, 1539, 1617, 1751, 2010, 2372
MaeII	ACGT	1 cut(s)	1048
MaeIII	GTNAC	2 cut(s)	1186, 1434
MfeI	CAATTG	2 cut(s)	249, 1704
MflI	RGATCY	3 cut(s)	48, 415, 2646
MhlI	GDGCHC	5 cut(s)	94, 469, 1000, 1614, 2260
MlsI	TGGCCA	4 cut(s)	476, 1112, 2194, 2759
MluNI	TGGCCA	4 cut(s)	476, 1112, 2194, 2759
MlyI	GAGTC	4 cut(s)	404, 1133, 1312, 2669
MmeI	TCCRAC	3 cut(s)	900, 2082, 2202
Mox20I	TGGCCA	4 cut(s)	476, 1112, 2194, 2759
Mph1103I	ATGCAT	2 cut(s)	1365, 1988
MroI	TCCGGA	1 cut(s)	412
MroXI	GAANNNNTTC	2 cut(s)	1994, 2316
MscI	TGGCCA	4 cut(s)	476, 1112, 2194, 2759
MseI	TTAA	4 cut(s)	569, 1403, 2145, 2508
MslI	CAYNNNNRTG	4 cut(s)	280, 1368, 1761, 2163
Msp20I	TGGCCA	4 cut(s)	476, 1112, 2194, 2759
MspA1I	CMGCKG	2 cut(s)	523, 598
MspI	CCGG	4 cut(s)	413, 1283, 2293, 2790
MspR9I	CCNGG	6 cut(s)	345, 372, 484, 663, 1245, 1283
MunI	CAATTG	2 cut(s)	249, 1704
MvaI	CCWGG	5 cut(s)	345, 372, 484, 663, 1245
MvnI	CGCG	1 cut(s)	1926
NciI	CCSGG	1 cut(s)	1283
NlaIV	GGNNCC	2 cut(s)	417, 1813
NmuCI	GTSAC	1 cut(s)	1186
NsiI	ATGCAT	2 cut(s)	1365, 1988
NspI	RCATGY	1 cut(s)	1986
NspV	TTCGAA	1 cut(s)	2152
PaeR7I	CTCGAG	2 cut(s)	993, 2243
PagI	TCATGA	3 cut(s)	9, 913, 1089
PaqCI	CACCTGC	1 cut(s)	1075
PceI	AGGCCT	1 cut(s)	1621
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PdmI	GAANNNNTTC	2 cut(s)	1994, 2316
PfeI	GAWTC	5 cut(s)	96, 1153, 1292, 1640, 1892
Pfl23II	CGTACG	1 cut(s)	1049
PflMI	CCANNNNNTGG	1 cut(s)	263
PfoI	TCCNGGA	1 cut(s)	1243
PleI	GAGTC	4 cut(s)	403, 1132, 1312, 2669
PpsI	GAGTC	4 cut(s)	403, 1132, 1312, 2669
Ppu21I	YACGTR	1 cut(s)	1049
Psp124BI	GAGCTC	2 cut(s)	469, 1614
Psp6I	CCWGG	5 cut(s)	343, 370, 482, 661, 1243
PspFI	CCCAGC	3 cut(s)	578, 959, 1030
PspGI	CCWGG	5 cut(s)	343, 370, 482, 661, 1243
PspLI	CGTACG	1 cut(s)	1049
PspN4I	GGNNCC	2 cut(s)	417, 1813
PspXI	VCTCGAGB	2 cut(s)	993, 2243
PstI	CTGCAG	3 cut(s)	1605, 2265, 2479
PstNI	CAGNNNCTG	2 cut(s)	863, 2711
PsuI	RGATCY	3 cut(s)	48, 415, 2646
PvuII	CAGCTG	1 cut(s)	523
RseI	CAYNNNNRTG	4 cut(s)	280, 1368, 1761, 2163
SacI	GAGCTC	2 cut(s)	469, 1614
SaqAI	TTAA	4 cut(s)	569, 1403, 2145, 2508
ScaI	AGTACT	1 cut(s)	1599
SchI	GAGTC	4 cut(s)	404, 1133, 1312, 2669
ScrFI	CCNGG	6 cut(s)	345, 372, 484, 663, 1245, 1283
SduI	GDGCHC	5 cut(s)	94, 469, 1000, 1614, 2260
SexAI	ACCWGGT	1 cut(s)	343
SfcI	CTRYAG	4 cut(s)	551, 1601, 2261, 2475
Sfr274I	CTCGAG	2 cut(s)	993, 2243
SfuI	TTCGAA	1 cut(s)	2152
SlaI	CTCGAG	2 cut(s)	993, 2243
SmiMI	CAYNNNNRTG	4 cut(s)	280, 1368, 1761, 2163
SmlI	CTYRAG	7 cut(s)	53, 993, 2060, 2243, 2336, 2459, 2670
SmoI	CTYRAG	7 cut(s)	53, 993, 2060, 2243, 2336, 2459, 2670
SseBI	AGGCCT	1 cut(s)	1621
SsiI	CCGC	7 cut(s)	21, 60, 123, 367, 598, 1798, 2356
SspMI	CTAG	9 cut(s)	189, 510, 1194, 1266, 1539, 1617, 1751, 2010, 2372
SstI	GAGCTC	2 cut(s)	469, 1614
StuI	AGGCCT	1 cut(s)	1621
StyD4I	CCNGG	6 cut(s)	343, 370, 482, 661, 1243, 1281
StyI	CCWWGG	4 cut(s)	1025, 1265, 1616, 2009
TaaI	ACNGT	6 cut(s)	865, 1161, 1846, 2506, 2713, 2827
TaiI	ACGT	1 cut(s)	1051
TaqI	TCGA	7 cut(s)	94, 159, 994, 1956, 2152, 2244, 2844
TaqII	GACCGA	1 cut(s)	194
TatI	WGTACW	2 cut(s)	1597, 1972
TauI	GCSGC	3 cut(s)	24, 62, 370
TfiI	GAWTC	5 cut(s)	96, 1153, 1292, 1640, 1892
Tru1I	TTAA	4 cut(s)	569, 1403, 2145, 2508
Tru9I	TTAA	4 cut(s)	569, 1403, 2145, 2508
TseFI	GTSAC	1 cut(s)	1186
Tsp45I	GTSAC	1 cut(s)	1186
TspGWI	ACGGA	2 cut(s)	53, 2243
Van91I	CCANNNNNTGG	1 cut(s)	263
XagI	CCTNNNNNAGG	1 cut(s)	660
XapI	RAATTY	4 cut(s)	636, 1105, 1219, 1961
XceI	RCATGY	1 cut(s)	1986
XhoI	CTCGAG	2 cut(s)	993, 2243
XmaJI	CCTAGG	3 cut(s)	1265, 1616, 2009
XmnI	GAANNNNTTC	2 cut(s)	1994, 2316
XspI	CTAG	9 cut(s)	189, 510, 1194, 1266, 1539, 1617, 1751, 2010, 2372
ZrmI	AGTACT	1 cut(s)	1599
Zsp2I	ATGCAT	2 cut(s)	1365, 1988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.