Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003901

Physical Location & Seq

Genomic Coordinates Forward (+)

21873826 .. 21875099

Gene Structure 1274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGAGGATTATGATCGAAGGAGGCGTGTGGAAGAACACGGAGGATGAGATCCTCAAGGCGGCGGTCATGAAGTATGGGAAGAACCAGTGGGCTCGAATCTCGTCGCTCTTGGTTCGCAAATCGGCTAAGCAGTGTAAGGCGAGATGGTACGAGTGGCTCGACCCCTCCATCAAAAAGACTGAGTGGACTAGAGAAGAGGATGAGAAGCTTCTACATCTTGCTAAGCTCATGCCTACACAATGGAGAACCATTGCCCCGATTGTTGGTCGTACTCCGTCGCAGTGCCTCGAGCGGTATGAGAAACTGCTTGATGCAGCCTGTGTTAAGGATGAGAATTATGAACCGGGTGATGATCGACGGAAGTTGCGGCCTGGAGAGATTGACCCAAATCCCGAGTCGAAGCCCGCTCGTCCTGATCCTGTTGATATGGACGAGGATGAGAAGGAGATGCTTTCAGAGGCACGAGCTCGGTTAGCAAACACTAGGGGAAAGAAGGCTAAAAGGAAAGCCAGGGAGAAACAGCTTGAAGAGGCCAGAAGGCTTGCTTCGCTACAGAAAAGGAGAGAATTAAAGGCGGCTGGCATTGATACTAGGCAGCGAAAGAGGAAAAGGAAGGGAATAGACTACAATGCGGAAATTCCCTTTGAGAAAAAGCCTCCTCCAGGCTTTTATGATGTTGCTGATGAAGATAGACCAGTGGAGCAGCCTAACTTCCCTACGACTATTGAGGAACTTGAGGGGAAGAGAAGGATTGATGTGGAAGCGCAGTTGAGAAAGCAAGATGTTGCTAAGAACAAAATTGCTCAAAGACAGGATGCTCCATCAGCTATACTACAAGCCAACAAGATGAATGATCCGGAAACAGTTAGGAAGAGATCAAAACTGATGCTTCCTGCACCCCAAATTTCGGACAATGAATTGGAGGAAATTGCAAAGATGGGTCAAGCTAATTCAGATCGATCTTGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009889 GO:0009987 GO:0010204 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032502 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Myb_Cef Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

324

Amino Acids

37.4

Weight (kDa)

9.38

Isoelectric Point (pI)

62.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	8 - 53	1.1e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	10 - 70	1.8e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	59 - 103	1.5e-10	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	62 - 110	9.7e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09770
fragaria_vesca	FvH4_3g19200 FvH4_3g19210 FvH4_6g01950
malus_domestica	MD04G1229500.v1.1 MD12G1246400.v1.1
prunus_persica	Prupe.6G349400_v2.0.a1
pyrus_communis	pycom04g20330 pycom04g20340 pycom12g22600
rosa_chinensis	RchiOBHm_Chr3g0449801 RchiOBHm_Chr5g0032281
rosa_laevigata	RLG00000025799 RLG00000033377
rosa_multiflora	Rmu_co8441867.1_g000001 Rmu_sc0000610.1_g000011 Rmu_sc0013983.1_g000008 Rmu_ssc0000013.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048170 Rroxscaffold_1G00048180 Rroxscaffold_6G00427620
rosa_rugosa	Rorug02G0623400 Rorug02G0623400 Rorug05G0130300
rosa_samantha	Rh3AG021600 Rh3BG022300 Rh3CG020900 Rh3DG022000 Rh5BG224900 Rh5CG250300 Rh5DG229500 Rh5DG229600
rosa_wichuraiana	Rw3G001770 Rw5G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	292, 407
AccIII	TCCGGA	1 cut(s)	856
AciI	CCGC	7 cut(s)	59, 62, 292, 367, 405, 575, 632
AclWI	GGATC	3 cut(s)	43, 410, 848
AcsI	RAATTY	2 cut(s)	636, 903
AfaI	GTAC	2 cut(s)	149, 271
AfiI	CCNNNNNNNGG	4 cut(s)	58, 263, 662, 907
AgsI	TTSAA	1 cut(s)	527
AjnI	CCWGG	3 cut(s)	370, 509, 661
AluBI	AGCT	7 cut(s)	208, 226, 467, 523, 827, 947, 969
AluI	AGCT	7 cut(s)	208, 226, 467, 523, 827, 947, 969
Alw21I	GWGCWC	1 cut(s)	469
AlwI	GGATC	3 cut(s)	43, 410, 848
Ama87I	CYCGRG	2 cut(s)	287, 392
Aor13HI	TCCGGA	1 cut(s)	856
AoxI	GGCC	2 cut(s)	368, 531
ApeKI	GCWGC	4 cut(s)	314, 595, 703, 966
ApoI	RAATTY	2 cut(s)	636, 903
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
AspLEI	GCGC	1 cut(s)	766
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	1 cut(s)	359
AvaI	CYCGRG	2 cut(s)	287, 392
BanII	GRGCYC	2 cut(s)	94, 469
BauI	CACGAG	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	3 cut(s)	326, 607, 715
BccI	CCATC	4 cut(s)	138, 176, 829, 931
BciT130I	CCWGG	3 cut(s)	372, 511, 663
BcnI	CCSGG	1 cut(s)	345
BfaI	CTAG	3 cut(s)	189, 483, 591
BfmI	CTRYAG	1 cut(s)	551
BisI	GCNGC	7 cut(s)	60, 315, 368, 576, 596, 704, 967
BlpI	GCTNAGC	2 cut(s)	126, 222
BlsI	GCNGC	7 cut(s)	61, 316, 369, 577, 597, 705, 968
Bme1390I	CCNGG	4 cut(s)	345, 372, 511, 663
BmeT110I	CYCGRG	2 cut(s)	287, 392
BmrFI	CCNGG	4 cut(s)	345, 372, 511, 663
BmsI	GCATC	4 cut(s)	301, 438, 805, 876
BpmI	CTGGAG	2 cut(s)	393, 645
Bpu1102I	GCTNAGC	2 cut(s)	126, 222
BpuEI	CTTGAG	2 cut(s)	38, 755
BpuMI	CCSGG	1 cut(s)	345
Bsa29I	ATCGAT	1 cut(s)	958
BsaBI	GATNNNNATC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	510
BsaWI	WCCGGW	1 cut(s)	856
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 263, 662, 907
Bse1I	ACTGG	2 cut(s)	85, 695
Bse3DI	GCAATG	1 cut(s)	249
Bse8I	GATNNNNATC	1 cut(s)	11
BseAI	TCCGGA	1 cut(s)	856
BseBI	CCWGG	3 cut(s)	372, 511, 663
BseCI	ATCGAT	1 cut(s)	958
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	5 cut(s)	49, 205, 334, 442, 820
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	4 cut(s)	58, 263, 662, 907
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	2 cut(s)	85, 695
BseRI	GAGGAG	1 cut(s)	648
BseXI	GCAGC	3 cut(s)	326, 607, 715
BsgI	GTGCAG	1 cut(s)	879
BshFI	GGCC	2 cut(s)	370, 533
BshVI	ATCGAT	1 cut(s)	958
BsiHKAI	GWGCWC	1 cut(s)	469
BsiHKCI	CYCGRG	2 cut(s)	287, 392
BsiSI	CCGG	2 cut(s)	344, 857
BslI	CCNNNNNNNGG	4 cut(s)	58, 263, 662, 907
BsnI	GGCC	2 cut(s)	370, 533
BsoBI	CYCGRG	2 cut(s)	287, 392
Bsp1286I	GDGCHC	2 cut(s)	94, 469
Bsp13I	TCCGGA	1 cut(s)	856
Bsp143I	GATC	8 cut(s)	12, 48, 352, 415, 853, 875, 955, 959
Bsp1720I	GCTNAGC	2 cut(s)	126, 222
BspACI	CCGC	7 cut(s)	59, 62, 292, 367, 405, 575, 632
BspANI	GGCC	2 cut(s)	370, 533
BspCNI	CTCAG	1 cut(s)	172
BspDI	ATCGAT	1 cut(s)	958
BspEI	TCCGGA	1 cut(s)	856
BspHI	TCATGA	1 cut(s)	66
BspPI	GGATC	3 cut(s)	43, 410, 848
BsrBI	CCGCTC	2 cut(s)	292, 407
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	2 cut(s)	85, 695
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	8 cut(s)	12, 48, 352, 415, 853, 875, 955, 959
BssSI	CACGAG	1 cut(s)	462
Bst2BI	CACGAG	1 cut(s)	462
Bst2UI	CCWGG	3 cut(s)	372, 511, 663
Bst4CI	ACNGT	1 cut(s)	865
Bst6I	CTCTTC	4 cut(s)	189, 522, 737, 866
BstC8I	GCNNGC	3 cut(s)	405, 543, 580
BstDEI	CTNAG	4 cut(s)	126, 180, 222, 789
BstENI	CCTNNNNNAGG	1 cut(s)	660
BstF5I	GGATG	5 cut(s)	49, 205, 334, 442, 820
BstHHI	GCGC	1 cut(s)	766
BstKTI	GATC	8 cut(s)	15, 51, 355, 418, 856, 878, 958, 962
BstMBI	GATC	8 cut(s)	12, 48, 352, 415, 853, 875, 955, 959
BstMWI	GCNNNNNNNGC	3 cut(s)	473, 547, 824
BstNI	CCWGG	3 cut(s)	372, 511, 663
BstSCI	CCNGG	4 cut(s)	343, 370, 509, 661
BstSFI	CTRYAG	1 cut(s)	551
BstV1I	GCAGC	3 cut(s)	326, 607, 715
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
Bsu15I	ATCGAT	1 cut(s)	958
BsuRI	GGCC	2 cut(s)	370, 533
BsuTUI	ATCGAT	1 cut(s)	958
BtsCI	GGATG	5 cut(s)	49, 205, 334, 442, 820
BtsI	GCAGTG	2 cut(s)	137, 287
BtsIMutI	CAGTG	4 cut(s)	92, 137, 287, 702
Cac8I	GCNNGC	3 cut(s)	405, 543, 580
CciI	TCATGA	1 cut(s)	66
CfoI	GCGC	1 cut(s)	766
ClaI	ATCGAT	1 cut(s)	958
Csp6I	GTAC	2 cut(s)	148, 270
CviAII	CATG	2 cut(s)	67, 229
CviQI	GTAC	2 cut(s)	148, 270
DdeI	CTNAG	4 cut(s)	126, 180, 222, 789
DpnI	GATC	8 cut(s)	14, 50, 354, 417, 855, 877, 957, 961
DpnII	GATC	8 cut(s)	12, 48, 352, 415, 853, 875, 955, 959
Eam1104I	CTCTTC	4 cut(s)	189, 522, 737, 866
EarI	CTCTTC	4 cut(s)	189, 522, 737, 866
Ecl136II	GAGCTC	1 cut(s)	467
Eco24I	GRGCYC	2 cut(s)	94, 469
Eco53kI	GAGCTC	1 cut(s)	467
Eco88I	CYCGRG	2 cut(s)	287, 392
EcoICRI	GAGCTC	1 cut(s)	467
EcoNI	CCTNNNNNAGG	1 cut(s)	660
EcoRII	CCWGG	3 cut(s)	370, 509, 661
EcoT38I	GRGCYC	2 cut(s)	94, 469
FaeI	CATG	2 cut(s)	70, 232
FaiI	YATR	9 cut(s)	11, 68, 75, 230, 297, 339, 428, 672, 830
FalI	AAGNNNNNCTT	2 cut(s)	529, 561
FatI	CATG	2 cut(s)	66, 228
FauI	CCCGC	1 cut(s)	412
Fnu4HI	GCNGC	7 cut(s)	60, 315, 368, 576, 596, 704, 967
FokI	GGATG	5 cut(s)	56, 212, 341, 449, 827
FriOI	GRGCYC	2 cut(s)	94, 469
Fsp4HI	GCNGC	7 cut(s)	60, 315, 368, 576, 596, 704, 967
FspBI	CTAG	3 cut(s)	189, 483, 591
GlaI	GCGC	1 cut(s)	765
GluI	GCNGC	7 cut(s)	60, 315, 368, 576, 596, 704, 967
GsuI	CTGGAG	2 cut(s)	393, 645
HaeIII	GGCC	2 cut(s)	370, 533
HapII	CCGG	2 cut(s)	344, 857
HhaI	GCGC	1 cut(s)	766
Hin1II	CATG	2 cut(s)	70, 232
Hin6I	GCGC	1 cut(s)	764
HinP1I	GCGC	1 cut(s)	764
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	2 cut(s)	96, 395
HpaII	CCGG	2 cut(s)	344, 857
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	3 cut(s)	457, 910, 955
Hpy188III	TCNNGA	4 cut(s)	67, 392, 413, 857
Hpy8I	GTNNAC	1 cut(s)	186
Hpy99I	CGWCG	3 cut(s)	106, 280, 360
HpyAV	CCTTC	6 cut(s)	11, 436, 487, 531, 607, 741
HpyCH4III	ACNGT	1 cut(s)	865
HpyCH4V	TGCA	4 cut(s)	314, 896, 932, 966
HpyF10VI	GCNNNNNNNGC	3 cut(s)	473, 547, 824
HpyF3I	CTNAG	4 cut(s)	126, 180, 222, 789
Hsp92II	CATG	2 cut(s)	70, 232
HspAI	GCGC	1 cut(s)	764
Kpn2I	TCCGGA	1 cut(s)	856
Kzo9I	GATC	8 cut(s)	12, 48, 352, 415, 853, 875, 955, 959
LmnI	GCTCC	2 cut(s)	700, 823
Lsp1109I	GCAGC	3 cut(s)	326, 607, 715
LweI	GCATC	4 cut(s)	301, 438, 805, 876
MaeI	CTAG	3 cut(s)	189, 483, 591
MalI	GATC	8 cut(s)	14, 50, 354, 417, 855, 877, 957, 961
MbiI	CCGCTC	2 cut(s)	292, 407
MboI	GATC	8 cut(s)	12, 48, 352, 415, 853, 875, 955, 959
MboII	GAAGA	7 cut(s)	43, 91, 206, 539, 698, 754, 883
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	2 cut(s)	94, 469
MluCI	AATT	8 cut(s)	334, 566, 636, 798, 903, 917, 927, 949
MlyI	GAGTC	1 cut(s)	404
MroI	TCCGGA	1 cut(s)	856
MseI	TTAA	2 cut(s)	324, 569
MspA1I	CMGCKG	1 cut(s)	969
MspI	CCGG	2 cut(s)	344, 857
MspR9I	CCNGG	4 cut(s)	345, 372, 511, 663
MvaI	CCWGG	3 cut(s)	372, 511, 663
MwoI	GCNNNNNNNGC	3 cut(s)	473, 547, 824
NciI	CCSGG	1 cut(s)	345
NdeII	GATC	8 cut(s)	12, 48, 352, 415, 853, 875, 955, 959
NlaIII	CATG	2 cut(s)	70, 232
PaeR7I	CTCGAG	1 cut(s)	287
PagI	TCATGA	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 156
PfeI	GAWTC	1 cut(s)	96
PkrI	GCNGC	7 cut(s)	61, 316, 369, 577, 597, 705, 968
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
Psp124BI	GAGCTC	1 cut(s)	469
Psp6I	CCWGG	3 cut(s)	370, 509, 661
PspGI	CCWGG	3 cut(s)	370, 509, 661
PspXI	VCTCGAGB	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	48
PvuII	CAGCTG	1 cut(s)	969
RsaI	GTAC	2 cut(s)	149, 271
RsaNI	GTAC	2 cut(s)	148, 270
SacI	GAGCTC	1 cut(s)	469
SaqAI	TTAA	2 cut(s)	324, 569
SatI	GCNGC	7 cut(s)	60, 315, 368, 576, 596, 704, 967
Sau3AI	GATC	8 cut(s)	12, 48, 352, 415, 853, 875, 955, 959
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	4 cut(s)	345, 372, 511, 663
SduI	GDGCHC	2 cut(s)	94, 469
SetI	ASST	7 cut(s)	210, 228, 469, 525, 829, 949, 971
SfaNI	GCATC	4 cut(s)	301, 438, 805, 876
SfcI	CTRYAG	1 cut(s)	551
Sfr274I	CTCGAG	1 cut(s)	287
SlaI	CTCGAG	1 cut(s)	287
SmlI	CTYRAG	3 cut(s)	53, 287, 734
SmoI	CTYRAG	3 cut(s)	53, 287, 734
Sse9I	AATT	8 cut(s)	334, 566, 636, 798, 903, 917, 927, 949
SsiI	CCGC	7 cut(s)	59, 62, 292, 367, 405, 575, 632
SspMI	CTAG	3 cut(s)	189, 483, 591
SstI	GAGCTC	1 cut(s)	469
StyD4I	CCNGG	4 cut(s)	343, 370, 509, 661
TaaI	ACNGT	1 cut(s)	865
TaqI	TCGA	7 cut(s)	15, 94, 159, 288, 355, 398, 958
TasI	AATT	8 cut(s)	334, 566, 636, 798, 903, 917, 927, 949
TauI	GCSGC	3 cut(s)	62, 370, 578
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	2 cut(s)	324, 569
Tru9I	TTAA	2 cut(s)	324, 569
TscAI	CASTG	4 cut(s)	92, 137, 287, 702
TseI	GCWGC	4 cut(s)	314, 595, 703, 966
TspDTI	ATGAA	5 cut(s)	83, 354, 699, 863, 930
TspGWI	ACGGA	3 cut(s)	53, 264, 373
TspRI	CASTG	4 cut(s)	92, 137, 287, 702
XagI	CCTNNNNNAGG	1 cut(s)	660
XapI	RAATTY	2 cut(s)	636, 903
XhoI	CTCGAG	1 cut(s)	287
XspI	CTAG	3 cut(s)	189, 483, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.