Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003901

Physical Location & Seq

Genomic Coordinates Reverse (-)

11594278 .. 11594787

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0130300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGACGCTGTGGTGATTGGGGAGTCCGGAGTTCCGTCTTGGAGAGTAATTGGCTTCTATGGGTATGCCAGAACGAGTGAAAGAGATCGTTCATGGCAATTGTTACGTGATCTTTCTGACCTGGACTCACTTCCCTGGATTGTGATAGGAGATTTCAACGAAATTTTGAATAATGGGGAGAAGATTTCTGGTCCCATTCGAGCAGAAAGACAGATGCGAGGCTTCCGCGAGGCTTTAGGATATTGTGACTTATTGGATCTAGGGGTCCATGGCGCTATGGACACTTGGTGGAATTCGGAGACGTTGTTGCGTCTAGATAGAGCGATCTGCACTCCATCTTGGTTTGATTTATTTGGACATTCTAAACTATTTCATCTCCTGCCTTCGGATTCTGATCATGTACCTCTGCTTCTGAAGGCTAGCACAGCCCCTCTGGTAGTGCGTTCCAAGCAGCACAGCTTCAAGTTTGAGGGTTCTGGTTGCAACATCCTGAATCTGACGGTGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009889 GO:0009987 GO:0010204 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032502 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Myb_Cef Myb_DNA-binding

Protein Analysis

169

Amino Acids

19.15

Weight (kDa)

5.69

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	15 - 117	5.4e-08	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09770
fragaria_vesca	FvH4_3g19200 FvH4_3g19210 FvH4_6g01950
malus_domestica	MD04G1229500.v1.1 MD12G1246400.v1.1
prunus_persica	Prupe.6G349400_v2.0.a1
pyrus_communis	pycom04g20330 pycom04g20340 pycom12g22600
rosa_chinensis	RchiOBHm_Chr3g0449801 RchiOBHm_Chr5g0032281
rosa_laevigata	RLG00000025799 RLG00000033377
rosa_multiflora	Rmu_co8441867.1_g000001 Rmu_sc0000610.1_g000011 Rmu_sc0013983.1_g000008 Rmu_ssc0000013.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048170 Rroxscaffold_1G00048180 Rroxscaffold_6G00427620
rosa_rugosa	Rorug02G0623400 Rorug02G0623400 Rorug05G0130300
rosa_samantha	Rh3AG021600 Rh3BG022300 Rh3CG020900 Rh3DG022000 Rh5BG224900 Rh5CG250300 Rh5DG229500 Rh5DG229600
rosa_wichuraiana	Rw3G001770 Rw5G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	228
AccIII	TCCGGA	1 cut(s)	26
AciI	CCGC	1 cut(s)	226
AclWI	GGATC	1 cut(s)	264
AcsI	RAATTY	2 cut(s)	162, 292
AcuI	CTGAAG	1 cut(s)	434
AdeI	CACNNNGTG	1 cut(s)	288
AfaI	GTAC	1 cut(s)	402
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgsI	TTSAA	3 cut(s)	157, 169, 463
AjnI	CCWGG	2 cut(s)	120, 134
AluBI	AGCT	1 cut(s)	459
AluI	AGCT	1 cut(s)	459
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	264
Aor13HI	TCCGGA	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	451
ApoI	RAATTY	2 cut(s)	162, 292
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	191, 265
AsuHPI	GGTGA	1 cut(s)	25
AsuNHI	GCTAGC	1 cut(s)	419
AvaII	GGWCC	2 cut(s)	191, 265
BarI	GAAGNNNNNNTAC	2 cut(s)	393, 425
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	1 cut(s)	343
BciT130I	CCWGG	2 cut(s)	122, 136
BclI	TGATCA	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	3 cut(s)	260, 314, 420
BfoI	RGCGCY	1 cut(s)	276
BisI	GCNGC	1 cut(s)	452
BlsI	GCNGC	1 cut(s)	453
Bme1390I	CCNGG	2 cut(s)	122, 136
Bme18I	GGWCC	2 cut(s)	191, 265
BmgT120I	GGNCC	2 cut(s)	191, 265
BmiI	GGNNCC	2 cut(s)	193, 266
BmrFI	CCNGG	2 cut(s)	122, 136
BmsI	GCATC	1 cut(s)	204
BmtI	GCTAGC	1 cut(s)	423
BsaAI	YACGTR	1 cut(s)	107
BsaBI	GATNNNNATC	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	134, 268
BsaWI	WCCGGW	1 cut(s)	26
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse8I	GATNNNNATC	1 cut(s)	393
BseAI	TCCGGA	1 cut(s)	26
BseBI	CCWGG	2 cut(s)	122, 136
BseDI	CCNNGG	2 cut(s)	134, 268
BseGI	GGATG	1 cut(s)	486
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseXI	GCAGC	1 cut(s)	463
BsgI	GTGCAG	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	293
BsmBI	CGTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	177
Bsp13I	TCCGGA	1 cut(s)	26
Bsp143I	GATC	5 cut(s)	85, 109, 256, 324, 394
Bsp19I	CCATGG	1 cut(s)	268
BspACI	CCGC	1 cut(s)	226
BspEI	TCCGGA	1 cut(s)	26
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	2 cut(s)	193, 266
BspOI	GCTAGC	1 cut(s)	423
BspPI	GGATC	1 cut(s)	264
BssECI	CCNNGG	2 cut(s)	134, 268
BssMI	GATC	5 cut(s)	85, 109, 256, 324, 394
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	2 cut(s)	122, 136
Bst4CI	ACNGT	1 cut(s)	502
BstBAI	YACGTR	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	421
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	486
BstFNI	CGCG	1 cut(s)	228
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	5 cut(s)	88, 112, 259, 327, 397
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	5 cut(s)	85, 109, 256, 324, 394
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 448
BstNI	CCWGG	2 cut(s)	122, 136
BstSCI	CCNGG	2 cut(s)	120, 134
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	463
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	421
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	191, 265
CseI	GACGC	2 cut(s)	14, 299
Csp6I	GTAC	1 cut(s)	401
CviAII	CATG	3 cut(s)	93, 269, 398
CviJI	RGCY	6 cut(s)	54, 222, 233, 419, 428, 459
CviKI_1	RGCY	6 cut(s)	54, 222, 233, 419, 428, 459
CviQI	GTAC	1 cut(s)	401
DpnI	GATC	5 cut(s)	87, 111, 258, 326, 396
DpnII	GATC	5 cut(s)	85, 109, 256, 324, 394
DraIII	CACNNNGTG	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	268
Eco47I	GGWCC	2 cut(s)	191, 265
Eco57I	CTGAAG	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	292
EcoRII	CCWGG	2 cut(s)	120, 134
EcoT14I	CCWWGG	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	268
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	3 cut(s)	96, 272, 401
FaiI	YATR	6 cut(s)	60, 66, 94, 270, 278, 399
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	3 cut(s)	92, 268, 397
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	1 cut(s)	452
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	1 cut(s)	452
FspBI	CTAG	3 cut(s)	260, 314, 420
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	1 cut(s)	452
HaeII	RGCGCY	1 cut(s)	276
HapII	CCGG	1 cut(s)	27
HgaI	GACGC	2 cut(s)	14, 299
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	3 cut(s)	96, 272, 401
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	4 cut(s)	23, 125, 389, 493
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	6 cut(s)	118, 298, 388, 394, 414, 498
Hpy188III	TCNNGA	3 cut(s)	27, 314, 490
HpyAV	CCTTC	2 cut(s)	393, 409
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	2 cut(s)	106, 302
HpyCH4V	TGCA	2 cut(s)	330, 483
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 448
HpySE526I	ACGT	2 cut(s)	106, 302
Hsp92II	CATG	3 cut(s)	96, 272, 401
HspAI	GCGC	1 cut(s)	273
Kpn2I	TCCGGA	1 cut(s)	26
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	5 cut(s)	85, 109, 256, 324, 394
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	3 cut(s)	260, 314, 420
MaeII	ACGT	2 cut(s)	106, 302
MaeIII	GTNAC	2 cut(s)	102, 245
MalI	GATC	5 cut(s)	87, 111, 258, 326, 396
MboI	GATC	5 cut(s)	85, 109, 256, 324, 394
MboII	GAAGA	1 cut(s)	193
MfeI	CAATTG	1 cut(s)	98
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	4 cut(s)	48, 98, 162, 292
MlyI	GAGTC	2 cut(s)	32, 119
MnlI	CCTC	5 cut(s)	212, 223, 414, 441, 463
MroI	TCCGGA	1 cut(s)	26
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	2 cut(s)	122, 136
MunI	CAATTG	1 cut(s)	98
MvaI	CCWGG	2 cut(s)	122, 136
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	425, 448
NcoI	CCATGG	1 cut(s)	268
NdeII	GATC	5 cut(s)	85, 109, 256, 324, 394
NheI	GCTAGC	1 cut(s)	419
NlaIII	CATG	3 cut(s)	96, 272, 401
NlaIV	GGNNCC	2 cut(s)	193, 266
NmuCI	GTSAC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	389, 493
PkrI	GCNGC	1 cut(s)	453
PleI	GAGTC	2 cut(s)	31, 119
PpsI	GAGTC	2 cut(s)	31, 119
Ppu21I	YACGTR	1 cut(s)	107
Psp6I	CCWGG	2 cut(s)	120, 134
PspGI	CCWGG	2 cut(s)	120, 134
PspN4I	GGNNCC	2 cut(s)	193, 266
PspPI	GGNCC	2 cut(s)	191, 265
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	1 cut(s)	402
RsaNI	GTAC	1 cut(s)	401
SatI	GCNGC	1 cut(s)	452
Sau3AI	GATC	5 cut(s)	85, 109, 256, 324, 394
Sau96I	GGNCC	2 cut(s)	191, 265
SchI	GAGTC	2 cut(s)	32, 119
ScrFI	CCNGG	2 cut(s)	122, 136
SetI	ASST	5 cut(s)	109, 123, 305, 406, 461
SfaNI	GCATC	1 cut(s)	204
SinI	GGWCC	2 cut(s)	191, 265
Sse9I	AATT	4 cut(s)	48, 98, 162, 292
SsiI	CCGC	1 cut(s)	226
SspMI	CTAG	3 cut(s)	260, 314, 420
StyD4I	CCNGG	2 cut(s)	120, 134
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	2 cut(s)	109, 305
TaqI	TCGA	1 cut(s)	199
TasI	AATT	4 cut(s)	48, 98, 162, 292
TfiI	GAWTC	2 cut(s)	389, 493
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	2 cut(s)	81, 362
TspGWI	ACGGA	1 cut(s)	24
VpaK11BI	GGWCC	2 cut(s)	191, 265
XapI	RAATTY	2 cut(s)	162, 292
XbaI	TCTAGA	1 cut(s)	313
XspI	CTAG	3 cut(s)	260, 314, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.