Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003901

Physical Location & Seq

Genomic Coordinates Reverse (-)

1433293 .. 1439159

Gene Structure 5867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG022300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2733 bp

ATGCCTACGCAGTGGAGAACAATTGCCCCAATCGTTGGTCGTACTCCATCTCAATGCCTTGAAAGGTACGAGAAGCTCCTTGATGCAGCCTGTGTCAAGGATGAGAACTATGAACCAGGTGATGATCCCCGAAAATTGCGGCCTGGAGAGATTGACCCCAATCCTGAGTCTAAACCTGCTCGTCCGGATCCTGTTGATATGGATGAGGATGAGAAGGAAATGCTTTCTGAGGCACGAGCTCGGTTGGCCAACACCAGGGGAAAGAAGGCCAAAAGAAAGGCTAGAGAGAAACAGCTGGAGGAAGCCAGAAGGCTTGCTTCCCTACAGAAAAGGAGAGAATTAAAGGCTGCTGGGATTGATAATAGGCAGCGGAAGAGGAAAAGGAAGGGGATAGACTACAACGCTGAAATTCCCTTTGAGAAGAAGCCTCCTCCAGGCTTTTATGATGTTGCTGATGAAGATAGACCAGTTGACCAGCCTCAGTTCCCTACGACTATTGAGGAGCTTGAAGGGAAGAGAAGGGTTGATGTGGAAGCTCAGTTGAGGAAACAAGATATCGCAAAGAATAAAATTGCTCAGAGGCAGGATGCTCCATCAGCGATATTGCAAGCCAACAAGTTGAATGATCCAGAAACTGTTAGGAAGAGATCAAAGCTTATGCTTCCTGCACCTCAGATTTCAGATCATGAGTTGGAGGAAATTGCAAAGATGGGCTATGCAAATGATCTTGCTGGGAGTGAACTCACAGAAGGAAGTGGTGCAACTCGAGCCCTTCTTGCAAATTATGCCCAGACACCAAGGCTGGGAATGACACCTTCACGTACGCCCCAAAGAACACCTGCTGGTAAAGGTGATGCTATCATGATGGAAGCTTCAAATTTGGCCATGTTGAGAGAGTCTCAGACACCATTGTTAGGAGGAGAGAATCCACAGTTGCACCCATCAGATTTTTCTGGTGTCACTCCTAGAAAAAAGGAAATCCAGACGCCAAATTTGATGCTTACTCCTTCAACTCCTGGAGGTGCAGGTCTTACTCCTAGGATTGGCTTGACCCCGGCAAGGGATTCTTTTGGCATGACACCGAAGGGGACTCCAATGAGGGACGAGCTTCGTATCAATGAAGATGTTGATATGCATGATAGTGCAAAGATGGAGCATCGGAGACAGGCTGAGTTAAGGAAAAACTTGCAGATGGGTCTAAGCAAGTTACCACAGCCCAAAAATGAGTACCAGATAGTCATGCAGCCAGTTCCAGAAGATAATGAAGAACCTGAGGAGAAGATTGAAGAAGATATGTCTGATAGGATTGCTAGAGAAAGGGCTGAGGAAGAAGCACGACAGCAGGCATTACTTAGGAAGAGATCAAAAGTACTGCAGAGGGAGCTCCCTAGGCCTCCTGCTCCTTCAGTGGAATCTCTGAGAAAGTCCTTGTTGAGAGCAGATGAAGATAAGAGTAAAGTTGTTCCTCCTACTTCAATTGAGCAGGCCAATGAAATGATTACGAAGGAGCTTCTTAGTTTACTAGAGCATGATAATGTGAAATACCCACTTGATGAGAAAGTAGATAAGCGGAAAAAGAAAGGTACCAAGCGCAGTGCAAATGGCTCTACTCCTACTGTCCCTGAGATAGAAGACTTTGAAGAAGATGAACTGAAGGAGGCTGATTCAATGATAAAGGAAGAGGTTGAGTATCTTCGCGTTGCAATGGGACATGAAGATAAATCCCTCGATGAATTTGTTGAAGTACACAAGACATGCATGAATGATTTCATGTTTTTTCCTAGGCGCAATGCTTATGGTGCATCAAGTATTGCTGGAAATGAGGAGAAACTTGAGGCTTTGCAGAATGAGTTTGAGAATGTGAAGAAGAAGTTGGATGATGATCTTGGGAAGGCAGTGAGCCTTGAAAAAAAGGTTAAAGTTCGAACACATGGTTATGAGATGCGAGCTAAAGAAGTTCATTGGCCAAAAATTGAGGAAACTTTCAAGCAGTTGGACACTGCTGAAAAAGAACTCGAGTGCTTCCGTGCTCTGCAGAAGCAAGAACAACTTGCAGCCTCACACCGGATAAACAATCTTTGGGAAGAAGTTCAAAAACAAAAGGAGCTTGAGCGAACTTTACAAAAGCGGTATGGGGGTCTTCTAGTGGAGGTGGAAAGGGTACAACACCTTAGAGAAAAATACATAGCGCAAGAACAAGAACAAAAAGAAGTTGCAGCCAGAAATGATCTTGAGTTGGCTGATGCTGCAGCAGATGTGGCCGTTGTGCAGTCAACTGTTAATACAAGTGCCTCAGATGAGCTTGCTGCATCTCATGGTGAAACTACTGATCCACAAGTGGATGGTATAGATGTTGATGCAGAAAAGAAGGATGATATGACAGTTACCGCGGATGTAAATGTACCTAACAACACGCCTTCTGCTGCAGAGGGTGAGAATGACATACCATTACAAGGTACAAGTGGTGAAGGTTCTGATACTCACCTTTCTACCTCAGATGGGATCTACCCCAGTGGTGTTGCAGCTCAAGACTCTGTTAGCAATGGAGATGCTGTTGTTTCAGGCACTGTGGATATTGTGCTTCCTACTGAAAAGCTAACAAGTACCGATGTGGCCAATGACCAAGTTGTTGGGGCAGAAGTAGCCGGAGATGATGGTCTTGTCAGTGCAGATGCCACCACTGTTTCTGCTGAGGTGGTCGATTTGGCTGAAAATGCACCAACCCAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009889 GO:0009987 GO:0010204 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032502 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Myb_Cef Myb_DNA-binding

Protein Analysis

910

Amino Acids

101.55

Weight (kDa)

5.1

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_Cef	PF11831	329 - 576	1.1e-62	pre-mRNA splicing factor component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09770
fragaria_vesca	FvH4_3g19200 FvH4_3g19210 FvH4_6g01950
malus_domestica	MD04G1229500.v1.1 MD12G1246400.v1.1
prunus_persica	Prupe.6G349400_v2.0.a1
pyrus_communis	pycom04g20330 pycom04g20340 pycom12g22600
rosa_chinensis	RchiOBHm_Chr3g0449801 RchiOBHm_Chr5g0032281
rosa_laevigata	RLG00000025799 RLG00000033377
rosa_multiflora	Rmu_co8441867.1_g000001 Rmu_sc0000610.1_g000011 Rmu_sc0013983.1_g000008 Rmu_ssc0000013.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048170 Rroxscaffold_1G00048180 Rroxscaffold_6G00427620
rosa_rugosa	Rorug02G0623400 Rorug02G0623400 Rorug05G0130300
rosa_samantha	Rh3AG021600 Rh3BG022300 Rh3CG020900 Rh3DG022000 Rh5BG224900 Rh5CG250300 Rh5DG229500 Rh5DG229600
rosa_wichuraiana	Rw3G001770 Rw5G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	847
Acc36I	ACCTGC	3 cut(s)	184, 847, 1016
Acc65I	GGTACC	1 cut(s)	1583
AccB1I	GGYRCC	1 cut(s)	1583
AccB7I	CCANNNNNTGG	1 cut(s)	35
AccII	CGCG	2 cut(s)	1698, 2390
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	6 cut(s)	139, 370, 1570, 2128, 2388, 2390
AclWI	GGATC	6 cut(s)	119, 182, 195, 620, 2324, 2510
AcoI	YGGCCR	5 cut(s)	246, 882, 1964, 2259, 2613
AcsI	RAATTY	4 cut(s)	408, 877, 991, 1733
AcuI	CTGAAG	2 cut(s)	1389, 1673
AcyI	GRCGYC	1 cut(s)	986
AjnI	CCWGG	5 cut(s)	115, 142, 254, 433, 1015
AjuI	GAANNNNNNNTTGG	2 cut(s)	1856, 1888
Alw21I	GWGCWC	3 cut(s)	241, 1386, 2032
Alw26I	GTCTC	2 cut(s)	903, 1156
AlwI	GGATC	6 cut(s)	119, 182, 195, 620, 2324, 2510
AlwNI	CAGNNNCTG	2 cut(s)	635, 2567
Ama87I	CYCGRG	2 cut(s)	765, 2015
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	9 cut(s)	140, 246, 267, 882, 1391, 1485, 1964, 2259, 2613
ApoI	RAATTY	4 cut(s)	408, 877, 991, 1733
ArsI	GACNNNNNNTTYG	2 cut(s)	976, 1008
Asp700I	GAANNNNTTC	2 cut(s)	1766, 2088
Asp718I	GGTACC	1 cut(s)	1583
AspA2I	CCTAGG	3 cut(s)	1037, 1388, 1781
AspLEI	GCGC	3 cut(s)	1593, 1788, 2191
AsuC2I	CCSGG	1 cut(s)	1055
AsuHPI	GGTGA	6 cut(s)	131, 863, 2330, 2444, 2474, 2477
AsuII	TTCGAA	1 cut(s)	1924
AvaI	CYCGRG	2 cut(s)	765, 2015
AvrII	CCTAGG	3 cut(s)	1037, 1388, 1781
AxyI	CCTNAGG	1 cut(s)	1272
BalI	TGGCCA	4 cut(s)	248, 884, 1966, 2615
BamHI	GGATCC	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	1583
BanII	GRGCYC	3 cut(s)	241, 772, 1386
BauI	CACGAG	1 cut(s)	234
BbsI	GAAGAC	2 cut(s)	1638, 2132
Bbv12I	GWGCWC	3 cut(s)	241, 1386, 2032
BbvCI	CCTCAGC	2 cut(s)	1323, 2691
BceAI	ACGGC	1 cut(s)	2246
BciT130I	CCWGG	5 cut(s)	117, 144, 256, 435, 1017
BcnI	CCSGG	1 cut(s)	1055
BcoDI	GTCTC	2 cut(s)	903, 1156
BfaI	CTAG	8 cut(s)	282, 966, 1038, 1311, 1389, 1523, 1782, 2144
BfmI	CTRYAG	5 cut(s)	323, 1373, 2033, 2247, 2424
BfuAI	ACCTGC	3 cut(s)	184, 847, 1016
BlnI	CCTAGG	3 cut(s)	1037, 1388, 1781
BmcAI	AGTACT	1 cut(s)	1371
Bme1390I	CCNGG	6 cut(s)	117, 144, 256, 435, 1017, 1055
BmeT110I	CYCGRG	2 cut(s)	765, 2015
BmiI	GGNNCC	2 cut(s)	189, 1585
BmrFI	CCNGG	6 cut(s)	117, 144, 256, 435, 1017, 1055
BmrI	ACTGGG	1 cut(s)	2505
BmuI	ACTGGG	1 cut(s)	2505
BpiI	GAAGAC	2 cut(s)	1638, 2132
BplI	GAGNNNNNCTC	2 cut(s)	883, 915
BpmI	CTGGAG	4 cut(s)	165, 317, 417, 1038
Bpu10I	CCTNAGC	2 cut(s)	1323, 2691
Bpu14I	TTCGAA	1 cut(s)	1924
BpuEI	CTTGAG	4 cut(s)	1853, 2129, 2252, 2511
BpuMI	CCSGG	1 cut(s)	1055
BsaAI	YACGTR	1 cut(s)	821
BsaBI	GATNNNNATC	1 cut(s)	1881
BsaHI	GRCGYC	1 cut(s)	986
BsaJI	CCNNGG	7 cut(s)	255, 797, 1037, 1053, 1388, 1781, 2388
BsaWI	WCCGGW	2 cut(s)	184, 2064
BsaXI	ACNNNNNCTCC	2 cut(s)	2538, 2568
Bse1I	ACTGG	3 cut(s)	467, 1247, 2511
Bse21I	CCTNAGG	1 cut(s)	1272
Bse3DI	GCAATG	3 cut(s)	1710, 1795, 2548
Bse8I	GATNNNNATC	1 cut(s)	1881
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	5 cut(s)	117, 144, 256, 435, 1017
BseDI	CCNNGG	7 cut(s)	255, 797, 1037, 1053, 1388, 1781, 2388
BseGI	GGATG	8 cut(s)	106, 208, 214, 592, 1882, 2347, 2377, 2398
BseJI	GATNNNNATC	1 cut(s)	1881
BseMI	GCAATG	3 cut(s)	1710, 1795, 2548
BseNI	ACTGG	3 cut(s)	467, 1247, 2511
BseRI	GAGGAG	5 cut(s)	420, 515, 933, 1289, 1838
BseYI	CCCAGC	3 cut(s)	350, 731, 802
BsgI	GTGCAG	4 cut(s)	651, 1044, 2288, 2688
Bsh1236I	CGCG	2 cut(s)	1698, 2390
BshFI	GGCC	9 cut(s)	142, 248, 269, 884, 1393, 1487, 1966, 2261, 2615
BshNI	GGYRCC	1 cut(s)	1583
BsiHKAI	GWGCWC	3 cut(s)	241, 1386, 2032
BsiHKCI	CYCGRG	2 cut(s)	765, 2015
BsiSI	CCGG	4 cut(s)	185, 1055, 2065, 2646
BsiWI	CGTACG	1 cut(s)	821
BslFI	GGGAC	4 cut(s)	1102, 1115, 1604, 1722
BsmAI	GTCTC	2 cut(s)	903, 1156
BsmFI	GGGAC	4 cut(s)	1102, 1115, 1604, 1722
BsnI	GGCC	9 cut(s)	142, 248, 269, 884, 1393, 1487, 1966, 2261, 2615
BsoBI	CYCGRG	2 cut(s)	765, 2015
Bsp119I	TTCGAA	1 cut(s)	1924
Bsp1286I	GDGCHC	4 cut(s)	241, 772, 1386, 2032
Bsp13I	TCCGGA	1 cut(s)	184
BspACI	CCGC	6 cut(s)	139, 370, 1570, 2128, 2388, 2390
BspANI	GGCC	9 cut(s)	142, 248, 269, 884, 1393, 1487, 1966, 2261, 2615
BspEI	TCCGGA	1 cut(s)	184
BspFNI	CGCG	2 cut(s)	1698, 2390
BspHI	TCATGA	2 cut(s)	685, 861
BspLI	GGNNCC	2 cut(s)	189, 1585
BspMAI	CTGCAG	4 cut(s)	1377, 2037, 2251, 2428
BspMI	ACCTGC	3 cut(s)	184, 847, 1016
BspPI	GGATC	6 cut(s)	119, 182, 195, 620, 2324, 2510
BspT104I	TTCGAA	1 cut(s)	1924
BspT107I	GGYRCC	1 cut(s)	1583
BsrDI	GCAATG	3 cut(s)	1710, 1795, 2548
BsrI	ACTGG	3 cut(s)	467, 1247, 2511
BssECI	CCNNGG	7 cut(s)	255, 797, 1037, 1053, 1388, 1781, 2388
BssNI	GRCGYC	1 cut(s)	986
BssSI	CACGAG	1 cut(s)	234
BssT1I	CCWWGG	4 cut(s)	797, 1037, 1388, 1781
Bst2BI	CACGAG	1 cut(s)	234
Bst2UI	CCWGG	5 cut(s)	117, 144, 256, 435, 1017
Bst4CI	ACNGT	7 cut(s)	637, 933, 1618, 2278, 2383, 2569, 2683
Bst6I	CTCTTC	5 cut(s)	368, 509, 638, 1352, 1674
BstACI	GRCGYC	1 cut(s)	986
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstBAI	YACGTR	1 cut(s)	821
BstBI	TTCGAA	1 cut(s)	1924
BstC8I	GCNNGC	6 cut(s)	315, 609, 1344, 1485, 1947, 2304
BstDSI	CCRYGG	1 cut(s)	2388
BstENI	CCTNNNNNAGG	1 cut(s)	432
BstF5I	GGATG	8 cut(s)	106, 208, 214, 592, 1882, 2347, 2377, 2398
BstFNI	CGCG	2 cut(s)	1698, 2390
BstHHI	GCGC	3 cut(s)	1593, 1788, 2191
BstMAI	GTCTC	2 cut(s)	903, 1156
BstNI	CCWGG	5 cut(s)	117, 144, 256, 435, 1017
BstNSI	RCATGY	1 cut(s)	1758
BstSCI	CCNGG	6 cut(s)	115, 142, 254, 433, 1015, 1053
BstSFI	CTRYAG	5 cut(s)	323, 1373, 2033, 2247, 2424
BstUI	CGCG	2 cut(s)	1698, 2390
BstV2I	GAAGAC	2 cut(s)	1638, 2132
BstX2I	RGATCY	2 cut(s)	187, 2502
BstXI	CCANNNNNNTGG	1 cut(s)	2630
BstYI	RGATCY	2 cut(s)	187, 2502
Bsu36I	CCTNAGG	1 cut(s)	1272
BsuRI	GGCC	9 cut(s)	142, 248, 269, 884, 1393, 1487, 1966, 2261, 2615
BtgI	CCRYGG	1 cut(s)	2388
BtsCI	GGATG	8 cut(s)	106, 208, 214, 592, 1882, 2347, 2377, 2398
BtsI	GCAGTG	4 cut(s)	17, 1600, 1902, 1998
BtsIMutI	CAGTG	9 cut(s)	17, 1413, 1600, 1902, 1998, 2518, 2565, 2671, 2679
BveI	ACCTGC	3 cut(s)	184, 847, 1016
Cac8I	GCNNGC	6 cut(s)	315, 609, 1344, 1485, 1947, 2304
CaiI	CAGNNNCTG	2 cut(s)	635, 2567
CciI	TCATGA	2 cut(s)	685, 861
CfoI	GCGC	3 cut(s)	1593, 1788, 2191
Cfr42I	CCGCGG	1 cut(s)	2391
CseI	GACGC	1 cut(s)	994
CsiI	ACCWGGT	1 cut(s)	115
EaeI	YGGCCR	5 cut(s)	246, 882, 1964, 2259, 2613
Eam1104I	CTCTTC	5 cut(s)	368, 509, 638, 1352, 1674
EarI	CTCTTC	5 cut(s)	368, 509, 638, 1352, 1674
Ecl136II	GAGCTC	2 cut(s)	239, 1384
Eco130I	CCWWGG	4 cut(s)	797, 1037, 1388, 1781
Eco147I	AGGCCT	1 cut(s)	1393
Eco24I	GRGCYC	3 cut(s)	241, 772, 1386
Eco32I	GATATC	1 cut(s)	556
Eco53kI	GAGCTC	2 cut(s)	239, 1384
Eco57I	CTGAAG	2 cut(s)	1389, 1673
Eco81I	CCTNAGG	1 cut(s)	1272
Eco88I	CYCGRG	2 cut(s)	765, 2015
EcoICRI	GAGCTC	2 cut(s)	239, 1384
EcoNI	CCTNNNNNAGG	1 cut(s)	432
EcoRII	CCWGG	5 cut(s)	115, 142, 254, 433, 1015
EcoRV	GATATC	1 cut(s)	556
EcoT14I	CCWWGG	4 cut(s)	797, 1037, 1388, 1781
EcoT22I	ATGCAT	2 cut(s)	1137, 1760
EcoT38I	GRGCYC	3 cut(s)	241, 772, 1386
ErhI	CCWWGG	4 cut(s)	797, 1037, 1388, 1781
FalI	AAGNNNNNCTT	6 cut(s)	301, 333, 1051, 1083, 2034, 2066
FaqI	GGGAC	4 cut(s)	1102, 1115, 1604, 1722
FokI	GGATG	8 cut(s)	113, 215, 221, 599, 1889, 2354, 2384, 2405
FriOI	GRGCYC	3 cut(s)	241, 772, 1386
FspBI	CTAG	8 cut(s)	282, 966, 1038, 1311, 1389, 1523, 1782, 2144
GlaI	GCGC	3 cut(s)	1592, 1787, 2190
GsaI	CCCAGC	3 cut(s)	354, 735, 806
GsuI	CTGGAG	4 cut(s)	165, 317, 417, 1038
HaeIII	GGCC	9 cut(s)	142, 248, 269, 884, 1393, 1487, 1966, 2261, 2615
HapII	CCGG	4 cut(s)	185, 1055, 2065, 2646
HgaI	GACGC	1 cut(s)	994
HhaI	GCGC	3 cut(s)	1593, 1788, 2191
Hin1I	GRCGYC	1 cut(s)	986
Hin6I	GCGC	3 cut(s)	1591, 1786, 2189
HinP1I	GCGC	3 cut(s)	1591, 1786, 2189
HincII	GTYRAC	2 cut(s)	472, 2274
HindII	GTYRAC	2 cut(s)	472, 2274
HindIII	AAGCTT	2 cut(s)	653, 870
HinfI	GANTC	8 cut(s)	167, 896, 925, 1064, 1090, 1412, 1664, 2531
HpaII	CCGG	4 cut(s)	185, 1055, 2065, 2646
HphI	GGTGA	6 cut(s)	131, 863, 2330, 2444, 2474, 2477
Hpy166II	GTNNAC	5 cut(s)	472, 740, 1520, 1747, 2274
Hpy188III	TCNNGA	9 cut(s)	164, 185, 629, 686, 862, 982, 1253, 2231, 2528
Hpy8I	GTNNAC	5 cut(s)	472, 740, 1520, 1747, 2274
HpyCH4III	ACNGT	7 cut(s)	637, 933, 1618, 2278, 2383, 2569, 2683
HpyCH4IV	ACGT	1 cut(s)	820
HpySE526I	ACGT	1 cut(s)	820
Hsp92I	GRCGYC	1 cut(s)	986
HspAI	GCGC	3 cut(s)	1591, 1786, 2189
Kpn2I	TCCGGA	1 cut(s)	184
KpnI	GGTACC	1 cut(s)	1587
KspI	CCGCGG	1 cut(s)	2391
LmnI	GCTCC	9 cut(s)	81, 502, 595, 1153, 1381, 1389, 1405, 1507, 2104
MabI	ACCWGGT	1 cut(s)	115
MaeI	CTAG	8 cut(s)	282, 966, 1038, 1311, 1389, 1523, 1782, 2144
MaeII	ACGT	1 cut(s)	820
MaeIII	GTNAC	3 cut(s)	958, 1206, 2383
MfeI	CAATTG	2 cut(s)	21, 1476
MflI	RGATCY	2 cut(s)	187, 2502
MhlI	GDGCHC	4 cut(s)	241, 772, 1386, 2032
MlsI	TGGCCA	4 cut(s)	248, 884, 1966, 2615
MluNI	TGGCCA	4 cut(s)	248, 884, 1966, 2615
MlyI	GAGTC	4 cut(s)	176, 905, 1084, 2525
MmeI	TCCRAC	3 cut(s)	672, 1854, 1974
Mox20I	TGGCCA	4 cut(s)	248, 884, 1966, 2615
Mph1103I	ATGCAT	2 cut(s)	1137, 1760
MroI	TCCGGA	1 cut(s)	184
MroXI	GAANNNNTTC	2 cut(s)	1766, 2088
MscI	TGGCCA	4 cut(s)	248, 884, 1966, 2615
MseI	TTAA	4 cut(s)	341, 1175, 1917, 2280
MslI	CAYNNNNRTG	4 cut(s)	52, 1140, 1533, 1935
Msp20I	TGGCCA	4 cut(s)	248, 884, 1966, 2615
MspA1I	CMGCKG	3 cut(s)	295, 370, 2390
MspI	CCGG	4 cut(s)	185, 1055, 2065, 2646
MspR9I	CCNGG	6 cut(s)	117, 144, 256, 435, 1017, 1055
MunI	CAATTG	2 cut(s)	21, 1476
MvaI	CCWGG	5 cut(s)	117, 144, 256, 435, 1017
MvnI	CGCG	2 cut(s)	1698, 2390
NciI	CCSGG	1 cut(s)	1055
NlaIV	GGNNCC	2 cut(s)	189, 1585
NmuCI	GTSAC	1 cut(s)	958
NsiI	ATGCAT	2 cut(s)	1137, 1760
NspI	RCATGY	1 cut(s)	1758
NspV	TTCGAA	1 cut(s)	1924
PaeR7I	CTCGAG	2 cut(s)	765, 2015
PagI	TCATGA	2 cut(s)	685, 861
PaqCI	CACCTGC	1 cut(s)	847
PceI	AGGCCT	1 cut(s)	1393
PdmI	GAANNNNTTC	2 cut(s)	1766, 2088
PfeI	GAWTC	4 cut(s)	925, 1064, 1412, 1664
Pfl23II	CGTACG	1 cut(s)	821
PflMI	CCANNNNNTGG	1 cut(s)	35
PfoI	TCCNGGA	1 cut(s)	1015
PleI	GAGTC	4 cut(s)	175, 904, 1084, 2525
PpsI	GAGTC	4 cut(s)	175, 904, 1084, 2525
Ppu21I	YACGTR	1 cut(s)	821
Psp124BI	GAGCTC	2 cut(s)	241, 1386
Psp6I	CCWGG	5 cut(s)	115, 142, 254, 433, 1015
PspFI	CCCAGC	3 cut(s)	350, 731, 802
PspGI	CCWGG	5 cut(s)	115, 142, 254, 433, 1015
PspLI	CGTACG	1 cut(s)	821
PspN4I	GGNNCC	2 cut(s)	189, 1585
PspXI	VCTCGAGB	2 cut(s)	765, 2015
PstI	CTGCAG	4 cut(s)	1377, 2037, 2251, 2428
PstNI	CAGNNNCTG	2 cut(s)	635, 2567
PsuI	RGATCY	2 cut(s)	187, 2502
PvuII	CAGCTG	1 cut(s)	295
RseI	CAYNNNNRTG	4 cut(s)	52, 1140, 1533, 1935
SacI	GAGCTC	2 cut(s)	241, 1386
SacII	CCGCGG	1 cut(s)	2391
SaqAI	TTAA	4 cut(s)	341, 1175, 1917, 2280
ScaI	AGTACT	1 cut(s)	1371
SchI	GAGTC	4 cut(s)	176, 905, 1084, 2525
ScrFI	CCNGG	6 cut(s)	117, 144, 256, 435, 1017, 1055
SduI	GDGCHC	4 cut(s)	241, 772, 1386, 2032
SexAI	ACCWGGT	1 cut(s)	115
SfcI	CTRYAG	5 cut(s)	323, 1373, 2033, 2247, 2424
Sfr274I	CTCGAG	2 cut(s)	765, 2015
Sfr303I	CCGCGG	1 cut(s)	2391
SfuI	TTCGAA	1 cut(s)	1924
SgrBI	CCGCGG	1 cut(s)	2391
SlaI	CTCGAG	2 cut(s)	765, 2015
SmiMI	CAYNNNNRTG	4 cut(s)	52, 1140, 1533, 1935
SmlI	CTYRAG	6 cut(s)	765, 1832, 2015, 2108, 2231, 2526
SmoI	CTYRAG	6 cut(s)	765, 1832, 2015, 2108, 2231, 2526
SseBI	AGGCCT	1 cut(s)	1393
SsiI	CCGC	6 cut(s)	139, 370, 1570, 2128, 2388, 2390
SspMI	CTAG	8 cut(s)	282, 966, 1038, 1311, 1389, 1523, 1782, 2144
SstI	GAGCTC	2 cut(s)	241, 1386
StuI	AGGCCT	1 cut(s)	1393
StyD4I	CCNGG	6 cut(s)	115, 142, 254, 433, 1015, 1053
StyI	CCWWGG	4 cut(s)	797, 1037, 1388, 1781
TaaI	ACNGT	7 cut(s)	637, 933, 1618, 2278, 2383, 2569, 2683
TaiI	ACGT	1 cut(s)	823
TaqI	TCGA	5 cut(s)	766, 1728, 1924, 2016, 2700
TatI	WGTACW	2 cut(s)	1369, 1744
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	4 cut(s)	925, 1064, 1412, 1664
Tru1I	TTAA	4 cut(s)	341, 1175, 1917, 2280
Tru9I	TTAA	4 cut(s)	341, 1175, 1917, 2280
TscAI	CASTG	9 cut(s)	17, 1413, 1600, 1902, 2005, 2518, 2572, 2671, 2686
TseFI	GTSAC	1 cut(s)	958
Tsp45I	GTSAC	1 cut(s)	958
TspGWI	ACGGA	1 cut(s)	2015
TspRI	CASTG	9 cut(s)	17, 1413, 1600, 1902, 2005, 2518, 2572, 2671, 2686
Van91I	CCANNNNNTGG	1 cut(s)	35
XagI	CCTNNNNNAGG	1 cut(s)	432
XapI	RAATTY	4 cut(s)	408, 877, 991, 1733
XceI	RCATGY	1 cut(s)	1758
XhoI	CTCGAG	2 cut(s)	765, 2015
XmaJI	CCTAGG	3 cut(s)	1037, 1388, 1781
XmnI	GAANNNNTTC	2 cut(s)	1766, 2088
XspI	CTAG	8 cut(s)	282, 966, 1038, 1311, 1389, 1523, 1782, 2144
ZrmI	AGTACT	1 cut(s)	1371
Zsp2I	ATGCAT	2 cut(s)	1137, 1760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.