Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003901

Physical Location & Seq

Genomic Coordinates Reverse (-)

26028806 .. 26029662

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG229500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGATAGTTGAAGAAGCTCAGTATCCTGGTGAAGCACACAAAAGCTGCAGTCCTGGTTGTTGTCTATCAAGCATTGCTGAAGATGAGAACCCTGTGGCTTGTTTGCGGAGTGAATTTGAGAAGGTGCAGAATGAATTCGAGAAGGTGAAGAAGAAGGCACAAATCATTGAGAACAAGGTTAAAGTTCGTACAGATGGTTATGAGAAGCGTGCTAAAGATGTTCTTTGGCCAAAAATAGAGGAAACTTTCAAGCAAATGGACACAGCCACAAAAGAACTTGAGTGCTTCCAAGCTTTACAGAAGCAAGAACAATTAGCAGCAACAAGCCGGATAAATAATATGTGGGAGGAAGTTCAGAAACAAAAGGAGCTCCAGCAAACTCTGCAAAAGAGGTATGGAGATCTTGTAGTGAAGCTGGAAAAAATACAGCACCAATCCAAAGGCGCAGTACCAATGATCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009889 GO:0009987 GO:0010204 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032502 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Myb_Cef Myb_DNA-binding

Protein Analysis

154

Amino Acids

17.82

Weight (kDa)

6.75

Isoelectric Point (pI)

62.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09770
fragaria_vesca	FvH4_3g19200 FvH4_3g19210 FvH4_6g01950
malus_domestica	MD04G1229500.v1.1 MD12G1246400.v1.1
prunus_persica	Prupe.6G349400_v2.0.a1
pyrus_communis	pycom04g20330 pycom04g20340 pycom12g22600
rosa_chinensis	RchiOBHm_Chr3g0449801 RchiOBHm_Chr5g0032281
rosa_laevigata	RLG00000025799 RLG00000033377
rosa_multiflora	Rmu_co8441867.1_g000001 Rmu_sc0000610.1_g000011 Rmu_sc0013983.1_g000008 Rmu_ssc0000013.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048170 Rroxscaffold_1G00048180 Rroxscaffold_6G00427620
rosa_rugosa	Rorug02G0623400 Rorug02G0623400 Rorug05G0130300
rosa_samantha	Rh3AG021600 Rh3BG022300 Rh3CG020900 Rh3DG022000 Rh5BG224900 Rh5CG250300 Rh5DG229500 Rh5DG229600
rosa_wichuraiana	Rw3G001770 Rw5G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	106
AcoI	YGGCCR	1 cut(s)	227
AcsI	RAATTY	2 cut(s)	113, 134
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	2 cut(s)	190, 450
AgsI	TTSAA	2 cut(s)	11, 250
AjnI	CCWGG	2 cut(s)	25, 52
AluBI	AGCT	5 cut(s)	17, 45, 293, 370, 415
AluI	AGCT	5 cut(s)	17, 45, 293, 370, 415
Alw21I	GWGCWC	1 cut(s)	372
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	2 cut(s)	45, 317
ApoI	RAATTY	2 cut(s)	113, 134
Asp700I	GAANNNNTTC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	446
AsuHPI	GGTGA	2 cut(s)	41, 157
BalI	TGGCCA	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	32, 329
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	2 cut(s)	27, 54
BciVI	GTATCC	1 cut(s)	33
BfaI	CTAG	1 cut(s)	463
BfmI	CTRYAG	1 cut(s)	46
BfuI	GTATCC	1 cut(s)	33
BglII	AGATCT	1 cut(s)	400
BisI	GCNGC	2 cut(s)	46, 318
BlsI	GCNGC	2 cut(s)	47, 319
Bme1390I	CCNGG	2 cut(s)	27, 54
BmrFI	CCNGG	2 cut(s)	27, 54
BpmI	CTGGAG	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	27, 54
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	32, 329
BsgI	GTGCAG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	328
BsnI	GGCC	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	2 cut(s)	400, 456
BspACI	CCGC	1 cut(s)	106
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	72
BssMI	GATC	2 cut(s)	400, 456
Bst2UI	CCWGG	2 cut(s)	27, 54
BstAPI	GCANNNNNTGC	1 cut(s)	382
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	2 cut(s)	403, 459
BstMBI	GATC	2 cut(s)	400, 456
BstMWI	GCNNNNNNNGC	1 cut(s)	382
BstNI	CCWGG	2 cut(s)	27, 54
BstSCI	CCNGG	2 cut(s)	25, 52
BstSFI	CTRYAG	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	32, 329
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuI	GTATCC	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	1 cut(s)	446
Csp6I	GTAC	2 cut(s)	189, 449
CviJI	RGCY	9 cut(s)	17, 45, 98, 229, 266, 293, 327, 370, 415
CviKI_1	RGCY	9 cut(s)	17, 45, 98, 229, 266, 293, 327, 370, 415
CviQI	GTAC	2 cut(s)	189, 449
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	2 cut(s)	402, 458
DpnII	GATC	2 cut(s)	400, 456
EaeI	YGGCCR	1 cut(s)	227
Ecl136II	GAGCTC	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	372
Eco53kI	GAGCTC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	99
EcoICRI	GAGCTC	1 cut(s)	370
EcoRI	GAATTC	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	25, 52
EcoT38I	GRGCYC	1 cut(s)	372
FaiI	YATR	3 cut(s)	201, 341, 396
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
Fnu4HI	GCNGC	2 cut(s)	46, 318
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	2 cut(s)	46, 318
FspBI	CTAG	1 cut(s)	463
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	2 cut(s)	46, 318
GsuI	CTGGAG	1 cut(s)	356
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	1 cut(s)	328
HhaI	GCGC	1 cut(s)	446
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HindIII	AAGCTT	1 cut(s)	291
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	2 cut(s)	41, 157
Hpy188I	TCNGA	1 cut(s)	357
Hpy188III	TCNNGA	1 cut(s)	139
HpyAV	CCTTC	3 cut(s)	115, 136, 148
HpyCH4V	TGCA	3 cut(s)	48, 127, 385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	382
HpyF3I	CTNAG	1 cut(s)	18
HspAI	GCGC	1 cut(s)	444
Kzo9I	GATC	2 cut(s)	400, 456
LmnI	GCTCC	2 cut(s)	367, 375
LpnPI	CCDG	8 cut(s)	12, 39, 39, 66, 105, 341, 386, 401
Lsp1109I	GCAGC	2 cut(s)	32, 329
MaeI	CTAG	1 cut(s)	463
MalI	GATC	2 cut(s)	402, 458
MboI	GATC	2 cut(s)	400, 456
MboII	GAAGA	5 cut(s)	23, 92, 160, 163, 451
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	372
MlsI	TGGCCA	1 cut(s)	229
MluCI	AATT	3 cut(s)	113, 134, 311
MluNI	TGGCCA	1 cut(s)	229
MnlI	CCTC	3 cut(s)	232, 340, 384
Mox20I	TGGCCA	1 cut(s)	229
MroXI	GAANNNNTTC	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	229
MseI	TTAA	1 cut(s)	180
Msp20I	TGGCCA	1 cut(s)	229
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	2 cut(s)	27, 54
MvaI	CCWGG	2 cut(s)	27, 54
MwoI	GCNNNNNNNGC	1 cut(s)	382
NdeII	GATC	2 cut(s)	400, 456
PdmI	GAANNNNTTC	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	47, 319
Psp124BI	GAGCTC	1 cut(s)	372
Psp6I	CCWGG	2 cut(s)	25, 52
PspGI	CCWGG	2 cut(s)	25, 52
PstI	CTGCAG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	2 cut(s)	190, 450
RsaNI	GTAC	2 cut(s)	189, 449
SacI	GAGCTC	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	2 cut(s)	46, 318
Sau3AI	GATC	2 cut(s)	400, 456
ScrFI	CCNGG	2 cut(s)	27, 54
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	9 cut(s)	19, 47, 126, 147, 180, 295, 372, 395, 417
SfcI	CTRYAG	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	3 cut(s)	113, 134, 311
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	1 cut(s)	463
SstI	GAGCTC	1 cut(s)	372
StyD4I	CCNGG	2 cut(s)	25, 52
TaqI	TCGA	1 cut(s)	138
TasI	AATT	3 cut(s)	113, 134, 311
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TseI	GCWGC	2 cut(s)	45, 317
TspDTI	ATGAA	1 cut(s)	147
XapI	RAATTY	2 cut(s)	113, 134
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.