Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003901

Physical Location & Seq

Genomic Coordinates Reverse (-)

12373651 .. 12374832

Gene Structure 1182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGAAGTATGGAATCAACGAGTGGGATCGAATCTCAATGTTGTTGAATCGCAAATCGGCACAGCAGTGCAAGGCACGCTGGTTTGAGTTGCTCGAACCCTCAATCAAGAAGGTCGAGTGGACTCGAGGGGAGGATGAGAAGCTTCTCCATCTTGCAAAGCTCATGCTGTCACAGTGGAGAACTATAGCCGAAAACGTTAATGGTCGTACTGCATCTCAATGCATTGAGAGGTATGAGAAGCTTCTCAATGCAGCATGTATTGATAGCCATGATAAACATGAAGATCCGAGGAGATTGAGGCCTGGAGAGATTGATCCCAACACCGAGACCAGGCTGGCTCGCCCGGACCTTGTGGACATGGATGAGGATGAGAAGGAGATGCTTTTGAAGGCTCGAGCTCGGTTGGCAAACACCAAAGGGAAGAAGTCCAAGAGGAAGGCGAGAGAGGCGCAGCTCTCGAAGAGGCTAGGAGGATTGCTTCTCTACATAAGTAGAGAAGTCGTACAGGAGCAGCATGATCAGTTTCCCATGATTATTGAGGAGCTTGAAGGGAAGAGAAGGGTTCATGTGGAAGCTGAGCTGAGGAAACAAGATGTTGCAAAGAACAAAATTTCCAACAAGTTGAATATTGATGATGTTTCCAATGTGGAAACAGTTAGAAAGATATCAAAACTTATGCTTCCTGCCCCGCAGATATCGGACATTGAATTGGAGAAGATTGTTAAGATGAGCTATGCAGGTGATCTTGTTGGTAGCGAGAATGGATTCGCAGCTGCAAATCTTTGGGTTACTCATGCAACTCCTAGATTTGGCTCCACTCCATCAAAGGTTACTGTGAGCGGGGATGAGCTCCATATCAATGAAGACATTGATAAAGATGATGGAGACAAATTCAAGCAACTAAAGCATTCTCAGAAGTCTAGAATAAATAACTTGCATAAGGGTTTAAGCAATTTGCCAAAGCTCAAAAGTGAGTACCAAATAGTTGTGCAACCCCAGAAGATAATGAGGAAGAAGTACATCAGGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009870 GO:0009889 GO:0009987 GO:0010204 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032502 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Myb_Cef Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

344

Amino Acids

39.61

Weight (kDa)

9.4

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_6	PF13921	2 - 48	7.9e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	37 - 82	4.7e-10	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	40 - 86	5e-09	Myb-like DNA-binding domain
Myb_Cef	PF11831	265 - 333	1.1e-08	pre-mRNA splicing factor component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09770
fragaria_vesca	FvH4_3g19200 FvH4_3g19210 FvH4_6g01950
malus_domestica	MD04G1229500.v1.1 MD12G1246400.v1.1
prunus_persica	Prupe.6G349400_v2.0.a1
pyrus_communis	pycom04g20330 pycom04g20340 pycom12g22600
rosa_chinensis	RchiOBHm_Chr3g0449801 RchiOBHm_Chr5g0032281
rosa_laevigata	RLG00000025799 RLG00000033377
rosa_multiflora	Rmu_co8441867.1_g000001 Rmu_sc0000610.1_g000011 Rmu_sc0013983.1_g000008 Rmu_ssc0000013.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048170 Rroxscaffold_1G00048180 Rroxscaffold_6G00427620
rosa_rugosa	Rorug02G0623400 Rorug02G0623400 Rorug05G0130300
rosa_samantha	Rh3AG021600 Rh3BG022300 Rh3CG020900 Rh3DG022000 Rh5BG224900 Rh5CG250300 Rh5DG229500 Rh5DG229600
rosa_wichuraiana	Rw3G001770 Rw5G020450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	728
Acc36I	ACCTGC	1 cut(s)	728
AccBSI	CCGCTC	1 cut(s)	840
AciI	CCGC	2 cut(s)	689, 840
AclI	AACGTT	1 cut(s)	195
AclWI	GGATC	3 cut(s)	33, 278, 308
AcsI	RAATTY	2 cut(s)	609, 890
AfaI	GTAC	4 cut(s)	208, 504, 977, 1019
AfiI	CCNNNNNNNGG	2 cut(s)	330, 809
AgsI	TTSAA	6 cut(s)	46, 388, 548, 625, 707, 895
AjnI	CCWGG	2 cut(s)	301, 329
AleI	CACNNNNGTG	1 cut(s)	64
AloI	GAACNNNNNNTCC	2 cut(s)	596, 628
Alw21I	GWGCWC	2 cut(s)	400, 852
Alw26I	GTCTC	2 cut(s)	320, 879
AlwI	GGATC	3 cut(s)	33, 278, 308
Ama87I	CYCGRG	2 cut(s)	123, 393
AoxI	GGCC	1 cut(s)	299
ApeKI	GCWGC	5 cut(s)	251, 451, 511, 770, 773
ApoI	RAATTY	2 cut(s)	609, 890
Asp700I	GAANNNNTTC	1 cut(s)	764
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	346
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	752
AvaI	CYCGRG	2 cut(s)	123, 393
AvaII	GGWCC	1 cut(s)	346
BanII	GRGCYC	2 cut(s)	400, 852
BbsI	GAAGAC	1 cut(s)	870
Bbv12I	GWGCWC	2 cut(s)	400, 852
BbvCI	CCTCAGC	1 cut(s)	581
BbvI	GCAGC	5 cut(s)	263, 463, 523, 760, 782
BccI	CCATC	3 cut(s)	156, 829, 875
BciT130I	CCWGG	2 cut(s)	303, 331
BclI	TGATCA	1 cut(s)	517
BcnI	CCSGG	1 cut(s)	344
BcoDI	GTCTC	2 cut(s)	320, 879
BfaI	CTAG	3 cut(s)	467, 804, 921
BfmI	CTRYAG	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	728
BisI	GCNGC	5 cut(s)	252, 452, 512, 771, 774
BlpI	GCTNAGC	1 cut(s)	576
BlsI	GCNGC	5 cut(s)	253, 453, 513, 772, 775
Bme1390I	CCNGG	3 cut(s)	303, 331, 344
Bme18I	GGWCC	1 cut(s)	346
BmeT110I	CYCGRG	2 cut(s)	123, 393
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	1 cut(s)	814
BmrFI	CCNGG	3 cut(s)	303, 331, 344
BmsI	GCATC	2 cut(s)	221, 369
BpiI	GAAGAC	1 cut(s)	870
BpmI	CTGGAG	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	581
Bpu1102I	GCTNAGC	1 cut(s)	576
BpuMI	CCSGG	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	2 cut(s)	330, 809
BseBI	CCWGG	2 cut(s)	303, 331
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	4 cut(s)	139, 367, 373, 850
BseLI	CCNNNNNNNGG	2 cut(s)	330, 809
BseMII	CTCAG	3 cut(s)	567, 572, 926
BseRI	GAGGAG	2 cut(s)	304, 554
BseXI	GCAGC	5 cut(s)	263, 463, 523, 760, 782
BshFI	GGCC	1 cut(s)	301
BsiHKAI	GWGCWC	2 cut(s)	400, 852
BsiHKCI	CYCGRG	2 cut(s)	123, 393
BsiSI	CCGG	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	330, 809
BsmAI	GTCTC	2 cut(s)	320, 879
BsmI	GAATGC	1 cut(s)	907
BsnI	GGCC	1 cut(s)	301
Bso31I	GGTCTC	1 cut(s)	320
BsoBI	CYCGRG	2 cut(s)	123, 393
Bsp1286I	GDGCHC	2 cut(s)	400, 852
Bsp143I	GATC	5 cut(s)	25, 283, 313, 517, 742
Bsp1720I	GCTNAGC	1 cut(s)	576
BspACI	CCGC	2 cut(s)	689, 840
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	3 cut(s)	568, 573, 925
BspLI	GGNNCC	1 cut(s)	814
BspMI	ACCTGC	1 cut(s)	728
BspPI	GGATC	3 cut(s)	33, 278, 308
BspTNI	GGTCTC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	840
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	5 cut(s)	25, 283, 313, 517, 742
Bst2UI	CCWGG	2 cut(s)	303, 331
Bst4CI	ACNGT	3 cut(s)	174, 655, 835
Bst6I	CTCTTC	2 cut(s)	455, 548
BstC8I	GCNNGC	3 cut(s)	76, 336, 340
BstDEI	CTNAG	3 cut(s)	576, 581, 912
BstF5I	GGATG	4 cut(s)	139, 367, 373, 850
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	5 cut(s)	28, 286, 316, 520, 745
BstMAI	GTCTC	2 cut(s)	320, 879
BstMBI	GATC	5 cut(s)	25, 283, 313, 517, 742
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 404, 446, 904
BstNI	CCWGG	2 cut(s)	303, 331
BstNSI	RCATGY	1 cut(s)	258
BstSCI	CCNGG	3 cut(s)	301, 329, 342
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	5 cut(s)	263, 463, 523, 760, 782
BstV2I	GAAGAC	1 cut(s)	870
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	301
BtsCI	GGATG	4 cut(s)	139, 367, 373, 850
BtsI	GCAGTG	1 cut(s)	71
BtsIMutI	CAGTG	2 cut(s)	71, 179
BveI	ACCTGC	1 cut(s)	728
Cac8I	GCNNGC	3 cut(s)	76, 336, 340
CfoI	GCGC	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	346
Csp6I	GTAC	4 cut(s)	207, 503, 976, 1018
CviAII	CATG	9 cut(s)	163, 255, 269, 278, 358, 515, 529, 566, 794
CviQI	GTAC	4 cut(s)	207, 503, 976, 1018
DdeI	CTNAG	3 cut(s)	576, 581, 912
DpnI	GATC	5 cut(s)	27, 285, 315, 519, 744
DpnII	GATC	5 cut(s)	25, 283, 313, 517, 742
Eam1104I	CTCTTC	2 cut(s)	455, 548
EarI	CTCTTC	2 cut(s)	455, 548
Ecl136II	GAGCTC	2 cut(s)	398, 850
Eco147I	AGGCCT	1 cut(s)	301
Eco24I	GRGCYC	2 cut(s)	400, 852
Eco31I	GGTCTC	1 cut(s)	320
Eco32I	GATATC	2 cut(s)	666, 696
Eco47I	GGWCC	1 cut(s)	346
Eco53kI	GAGCTC	2 cut(s)	398, 850
Eco88I	CYCGRG	2 cut(s)	123, 393
EcoICRI	GAGCTC	2 cut(s)	398, 850
EcoRII	CCWGG	2 cut(s)	301, 329
EcoRV	GATATC	2 cut(s)	666, 696
EcoT22I	ATGCAT	1 cut(s)	224
EcoT38I	GRGCYC	2 cut(s)	400, 852
FaeI	CATG	9 cut(s)	166, 258, 272, 281, 361, 518, 532, 569, 797
FatI	CATG	9 cut(s)	162, 254, 268, 277, 357, 514, 528, 565, 793
FauI	CCCGC	2 cut(s)	696, 833
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	5 cut(s)	252, 452, 512, 771, 774
FokI	GGATG	4 cut(s)	146, 374, 380, 857
FriOI	GRGCYC	2 cut(s)	400, 852
Fsp4HI	GCNGC	5 cut(s)	252, 452, 512, 771, 774
FspBI	CTAG	3 cut(s)	467, 804, 921
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	5 cut(s)	252, 452, 512, 771, 774
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	301
HapII	CCGG	1 cut(s)	344
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	9 cut(s)	166, 258, 272, 281, 361, 518, 532, 569, 797
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HindIII	AAGCTT	2 cut(s)	140, 239
HinfI	GANTC	5 cut(s)	12, 30, 46, 121, 765
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	1 cut(s)	752
Hpy166II	GTNNAC	2 cut(s)	120, 355
Hpy188I	TCNGA	3 cut(s)	288, 700, 915
Hpy188III	TCNNGA	3 cut(s)	106, 457, 921
Hpy8I	GTNNAC	2 cut(s)	120, 355
HpyAV	CCTTC	6 cut(s)	103, 367, 382, 430, 542, 552
HpyCH4III	ACNGT	3 cut(s)	174, 655, 835
HpyCH4IV	ACGT	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 404, 446, 904
HpyF3I	CTNAG	3 cut(s)	576, 581, 912
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	9 cut(s)	166, 258, 272, 281, 361, 518, 532, 569, 797
HspAI	GCGC	1 cut(s)	449
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	5 cut(s)	25, 283, 313, 517, 742
LmnI	GCTCC	4 cut(s)	508, 541, 818, 855
Lsp1109I	GCAGC	5 cut(s)	263, 463, 523, 760, 782
LweI	GCATC	2 cut(s)	221, 369
MaeI	CTAG	3 cut(s)	467, 804, 921
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	3 cut(s)	168, 787, 829
MalI	GATC	5 cut(s)	27, 285, 315, 519, 744
MbiI	CCGCTC	1 cut(s)	840
MboI	GATC	5 cut(s)	25, 283, 313, 517, 742
MboII	GAAGA	8 cut(s)	293, 433, 472, 565, 727, 875, 1012, 1024
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	2 cut(s)	400, 852
MluCI	AATT	4 cut(s)	609, 707, 890, 952
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	639
Mph1103I	ATGCAT	1 cut(s)	224
MroXI	GAANNNNTTC	1 cut(s)	764
MseI	TTAA	3 cut(s)	198, 723, 947
MslI	CAYNNNNRTG	3 cut(s)	64, 217, 858
MspA1I	CMGCKG	1 cut(s)	773
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	3 cut(s)	303, 331, 344
Mva1269I	GAATGC	1 cut(s)	907
MvaI	CCWGG	2 cut(s)	303, 331
MwoI	GCNNNNNNNGC	4 cut(s)	75, 404, 446, 904
NciI	CCSGG	1 cut(s)	344
NdeII	GATC	5 cut(s)	25, 283, 313, 517, 742
NlaIII	CATG	9 cut(s)	166, 258, 272, 281, 361, 518, 532, 569, 797
NlaIV	GGNNCC	1 cut(s)	814
NmuCI	GTSAC	1 cut(s)	168
NsiI	ATGCAT	1 cut(s)	224
NspI	RCATGY	1 cut(s)	258
OliI	CACNNNNGTG	1 cut(s)	64
PaeR7I	CTCGAG	2 cut(s)	123, 393
PaqCI	CACCTGC	1 cut(s)	728
PceI	AGGCCT	1 cut(s)	301
PctI	GAATGC	1 cut(s)	907
PdmI	GAANNNNTTC	1 cut(s)	764
PfeI	GAWTC	4 cut(s)	12, 30, 46, 765
PkrI	GCNGC	5 cut(s)	253, 453, 513, 772, 775
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Psp124BI	GAGCTC	2 cut(s)	400, 852
Psp1406I	AACGTT	1 cut(s)	195
Psp6I	CCWGG	2 cut(s)	301, 329
PspGI	CCWGG	2 cut(s)	301, 329
PspN4I	GGNNCC	1 cut(s)	814
PspPI	GGNCC	1 cut(s)	346
PspXI	VCTCGAGB	2 cut(s)	123, 393
PsuI	RGATCY	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	4 cut(s)	208, 504, 977, 1019
RsaNI	GTAC	4 cut(s)	207, 503, 976, 1018
RseI	CAYNNNNRTG	3 cut(s)	64, 217, 858
SacI	GAGCTC	2 cut(s)	400, 852
SaqAI	TTAA	3 cut(s)	198, 723, 947
SatI	GCNGC	5 cut(s)	252, 452, 512, 771, 774
Sau3AI	GATC	5 cut(s)	25, 283, 313, 517, 742
Sau96I	GGNCC	1 cut(s)	346
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	3 cut(s)	303, 331, 344
SduI	GDGCHC	2 cut(s)	400, 852
SfaNI	GCATC	2 cut(s)	221, 369
SfcI	CTRYAG	1 cut(s)	183
Sfr274I	CTCGAG	2 cut(s)	123, 393
SinI	GGWCC	1 cut(s)	346
SlaI	CTCGAG	2 cut(s)	123, 393
SmiMI	CAYNNNNRTG	3 cut(s)	64, 217, 858
SmlI	CTYRAG	2 cut(s)	123, 393
SmoI	CTYRAG	2 cut(s)	123, 393
Sse9I	AATT	4 cut(s)	609, 707, 890, 952
SseBI	AGGCCT	1 cut(s)	301
SsiI	CCGC	2 cut(s)	689, 840
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	3 cut(s)	467, 804, 921
SstI	GAGCTC	2 cut(s)	400, 852
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	3 cut(s)	301, 329, 342
TaaI	ACNGT	3 cut(s)	174, 655, 835
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	6 cut(s)	28, 93, 114, 124, 394, 458
TasI	AATT	4 cut(s)	609, 707, 890, 952
TatI	WGTACW	1 cut(s)	1017
TfiI	GAWTC	4 cut(s)	12, 30, 46, 765
Tru1I	TTAA	3 cut(s)	198, 723, 947
Tru9I	TTAA	3 cut(s)	198, 723, 947
TscAI	CASTG	2 cut(s)	71, 179
TseFI	GTSAC	1 cut(s)	168
TseI	GCWGC	5 cut(s)	251, 451, 511, 770, 773
Tsp45I	GTSAC	1 cut(s)	168
TspDTI	ATGAA	4 cut(s)	17, 294, 554, 876
TspRI	CASTG	2 cut(s)	71, 179
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	2 cut(s)	609, 890
XbaI	TCTAGA	1 cut(s)	920
XceI	RCATGY	1 cut(s)	258
XhoI	CTCGAG	2 cut(s)	123, 393
XmnI	GAANNNNTTC	1 cut(s)	764
XspI	CTAG	3 cut(s)	467, 804, 921
Zsp2I	ATGCAT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.