FvH4_3g20540

CBS domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
13588573 .. 13590518
1946 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20540.t1

Sequence Viewer

Length: 1212 bp
ATGGCAGTGAGCTTCTTGAGGCACGAGGTATCCGACCTCTGTCTAGCCAAGCCGGCTCTGAGGTCCCTCTCCATCTCCGCCACCGTCGCCCATGCCTTAGAGGCCCTCAAAACCTCTGAAGAGAACTTCCTCAGCGTCTGGGATTGCAACCACCACTCCAACACTACCCTCGCCGGCGATCAGTGCCGCTGTGTTGGGAAGGTCTGCATGGTCGATGTGATATGCTACCTTTCTCAAGATGCTAACCTCTTGTCTCCCTCCGCTGCTCTCAAAGCACCCGTCTCTGAAATCATGACAGAGACTGCAGGAACTGTTATGCATGTTGAGCCTTCTTGCAGCTTACTAAAAGCCATTGATTTAATGCTCCAAGGAATCCAGAACCTGGTGGTACCAATCCAAACCAGACAAAGCCTCAGTTCAAGAAGAAAGCAACACCCAAAACTCATCAACAGCAACACAAGCACCATCCACAACGGCCAAGAGTTCTGCTGGCTCACACAGGAAGACGTAGTCCGGTTCCTCCTCAACTCAATCGGGGTCTTCTCACCCCTTCCTGCTCTCTCCATCGACTCACTCGGCCTCATCAACACTGTTGACATCTTGGCCATCAACTACCACTCTCCAGCGAGCTCCGCCGTCCAGCTCATAACTCAGTCGCTGACGCAACAAACTTCAGTGGCTGTTGTTGACGTTGATGGGGTGTTGATCGGCGAGATCTCACCTTTTACACTTTCCAGCTGTGACGAGTCGGTGGCTGCAGCCATAGCCACTCTATCATGTGGAGAGCTCATGGCCTACATTGACTGTGGAGGACCCCCTGAGTACTTGATCAAAATTGTGACTGAGAGACTCAAAGAGAGGAAGTTACAAGGAGCTTTGGAGAGTTACTCATCAAGTACTTCAAGTTCCAGTTCAACAATGTTTTCTTCTTCTTCATCATCAGATGAGGAGTCCTCTGTGTCTCCAAGTAGTACCAGAATGGTGAGGTCTGGGAGGTTCAGCAGGTCAAATAGCTACTCAGCTAGAATGGTGAGGAGGGCTGAGGCCATAGTGTGTCATCCCAAGAGCTCATTGGTGGCTGTGATGATTCAGGCAATTGCTCACAGAGTGAATTATGTTTGGGTTATTGAGGATGATTGTAGCCTTGTGGGGATTGTCACATTTTCTGGGATGCTAAAGGTTTTCAGGGAACATTTAGAAACCATGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

404

Amino Acids

43.56

Weight (kDa)

5.78

Isoelectric Point (pI)

54.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 993
Acc65I GGTACC 1 cut(s) 388
AccB1I GGYRCC 1 cut(s) 388
AccB7I CCANNNNNTGG 1 cut(s) 382
AciI CCGC 4 cut(s) 78, 187, 261, 633
AcoI YGGCCR 2 cut(s) 475, 603
AcuI CTGAAG 2 cut(s) 138, 657
AdeI CACNNNGTG 1 cut(s) 1108
AfaI GTAC 4 cut(s) 390, 824, 898, 973
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 3 cut(s) 420, 903, 915
AjnI CCWGG 1 cut(s) 381
Alw21I GWGCWC 3 cut(s) 632, 789, 1070
Alw26I GTCTC 5 cut(s) 258, 286, 293, 841, 966
AlwNI CAGNNNCTG 6 cut(s) 138, 302, 311, 382, 658, 680
AoxI GGCC 6 cut(s) 102, 475, 577, 603, 792, 1044
ApeKI GCWGC 4 cut(s) 263, 336, 755, 758
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
Asp718I GGTACC 1 cut(s) 388
AspS9I GGNCC 3 cut(s) 63, 103, 812
AsuHPI GGTGA 4 cut(s) 537, 711, 994, 1042
AvaII GGWCC 2 cut(s) 63, 812
BalI TGGCCA 1 cut(s) 605
BanI GGYRCC 1 cut(s) 388
BanII GRGCYC 3 cut(s) 632, 789, 1070
BauI CACGAG 1 cut(s) 23
BbsI GAAGAC 2 cut(s) 510, 532
Bbv12I GWGCWC 3 cut(s) 632, 789, 1070
BbvCI CCTCAGC 2 cut(s) 131, 1041
BbvI GCAGC 4 cut(s) 250, 348, 742, 770
BccI CCATC 5 cut(s) 80, 473, 572, 614, 689
BceAI ACGGC 2 cut(s) 490, 620
BciT130I CCWGG 1 cut(s) 383
BciVI GTATCC 1 cut(s) 40
BclI TGATCA 1 cut(s) 828
BcoDI GTCTC 5 cut(s) 258, 286, 293, 841, 966
BfaI CTAG 3 cut(s) 44, 1023, 1210
BfmI CTRYAG 2 cut(s) 303, 756
BfuAI ACCTGC 1 cut(s) 993
BfuI GTATCC 1 cut(s) 40
BglI GCCNNNNNGGC 2 cut(s) 53, 101
BglII AGATCT 1 cut(s) 714
BisI GCNGC 5 cut(s) 187, 264, 337, 756, 759
BlsI GCNGC 5 cut(s) 188, 265, 338, 757, 760
BmcAI AGTACT 2 cut(s) 824, 898
Bme1390I CCNGG 1 cut(s) 383
Bme18I GGWCC 2 cut(s) 63, 812
BmgT120I GGNCC 3 cut(s) 63, 103, 812
BmiI GGNNCC 4 cut(s) 65, 390, 518, 814
BmrFI CCNGG 1 cut(s) 383
BmsI GCATC 2 cut(s) 229, 1161
BoxI GACNNNNGTC 1 cut(s) 39
BpiI GAAGAC 2 cut(s) 510, 532
BplI GAGNNNNNCTC 4 cut(s) 872, 904, 938, 970
BpmI CTGGAG 1 cut(s) 606
Bpu10I CCTNAGC 2 cut(s) 131, 1041
BpuEI CTTGAG 2 cut(s) 37, 219
BsaJI CCNNGG 2 cut(s) 367, 1203
BsaWI WCCGGW 1 cut(s) 513
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse118I RCCGGY 2 cut(s) 52, 173
Bse1I ACTGG 1 cut(s) 909
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 2 cut(s) 367, 1203
BseGI GGATG 4 cut(s) 465, 1057, 1138, 1176
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMII CTCAG 8 cut(s) 50, 145, 427, 665, 810, 834, 1032, 1032
BseNI ACTGG 1 cut(s) 909
BseRI GAGGAG 3 cut(s) 512, 962, 1048
BseXI GCAGC 4 cut(s) 250, 348, 742, 770
BshFI GGCC 6 cut(s) 104, 477, 579, 605, 794, 1046
BshNI GGYRCC 1 cut(s) 388
BsiHKAI GWGCWC 3 cut(s) 632, 789, 1070
BsiSI CCGG 3 cut(s) 53, 174, 514
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 5 cut(s) 258, 286, 293, 841, 966
BsmBI CGTCTC 1 cut(s) 286
BsmFI GGGAC 1 cut(s) 49
BsnI GGCC 6 cut(s) 104, 477, 579, 605, 794, 1046
Bsp1286I GDGCHC 3 cut(s) 632, 789, 1070
Bsp143I GATC 4 cut(s) 178, 705, 714, 828
Bsp19I CCATGG 1 cut(s) 1203
BspACI CCGC 4 cut(s) 78, 187, 261, 633
BspANI GGCC 6 cut(s) 104, 477, 579, 605, 794, 1046
BspCNI CTCAG 8 cut(s) 51, 144, 426, 664, 811, 835, 1031, 1033
BspHI TCATGA 1 cut(s) 291
BspLI GGNNCC 4 cut(s) 65, 390, 518, 814
BspMAI CTGCAG 2 cut(s) 307, 760
BspMI ACCTGC 1 cut(s) 993
BspT107I GGYRCC 1 cut(s) 388
BsrFI RCCGGY 2 cut(s) 52, 173
BsrI ACTGG 1 cut(s) 909
BssAI RCCGGY 2 cut(s) 52, 173
BssECI CCNNGG 2 cut(s) 367, 1203
BssMI GATC 4 cut(s) 178, 705, 714, 828
BssSI CACGAG 1 cut(s) 23
BssT1I CCWWGG 2 cut(s) 367, 1203
Bst2BI CACGAG 1 cut(s) 23
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 4 cut(s) 85, 313, 592, 806
Bst6I CTCTTC 1 cut(s) 114
BstC8I GCNNGC 4 cut(s) 54, 175, 491, 628
BstDEI CTNAG 9 cut(s) 59, 97, 131, 413, 651, 819, 843, 1018, 1041
BstDSI CCRYGG 1 cut(s) 1203
BstF5I GGATG 4 cut(s) 465, 1057, 1138, 1176
BstKTI GATC 4 cut(s) 181, 708, 717, 831
BstMAI GTCTC 5 cut(s) 258, 286, 293, 841, 966
BstMBI GATC 4 cut(s) 178, 705, 714, 828
BstMWI GCNNNNNNNGC 9 cut(s) 53, 86, 101, 183, 272, 325, 459, 632, 764
BstNI CCWGG 1 cut(s) 383
BstNSI RCATGY 1 cut(s) 323
BstPAI GACNNNNGTC 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 381
BstSFI CTRYAG 2 cut(s) 303, 756
BstV1I GCAGC 4 cut(s) 250, 348, 742, 770
BstV2I GAAGAC 2 cut(s) 510, 532
BstX2I RGATCY 1 cut(s) 714
BstYI RGATCY 1 cut(s) 714
BsuI GTATCC 1 cut(s) 40
BsuRI GGCC 6 cut(s) 104, 477, 579, 605, 794, 1046
BtgI CCRYGG 1 cut(s) 1203
BtsCI GGATG 4 cut(s) 465, 1057, 1138, 1176
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 4 cut(s) 12, 188, 588, 681
BveI ACCTGC 1 cut(s) 993
Cac8I GCNNGC 4 cut(s) 54, 175, 491, 628
CaiI CAGNNNCTG 6 cut(s) 138, 302, 311, 382, 658, 680
CciI TCATGA 1 cut(s) 291
Cfr10I RCCGGY 2 cut(s) 52, 173
Cfr13I GGNCC 3 cut(s) 63, 103, 812
CseI GACGC 2 cut(s) 124, 670
CsiI ACCWGGT 1 cut(s) 381
Csp6I GTAC 4 cut(s) 389, 823, 897, 972
CviAII CATG 7 cut(s) 92, 208, 292, 320, 777, 790, 1204
CviQI GTAC 4 cut(s) 389, 823, 897, 972
DdeI CTNAG 9 cut(s) 59, 97, 131, 413, 651, 819, 843, 1018, 1041
DpnI GATC 4 cut(s) 180, 707, 716, 830
DpnII GATC 4 cut(s) 178, 705, 714, 828
DraIII CACNNNGTG 1 cut(s) 1108
EaeI YGGCCR 2 cut(s) 475, 603
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
EciI GGCGGA 2 cut(s) 67, 622
Ecl136II GAGCTC 3 cut(s) 630, 787, 1068
Eco130I CCWWGG 2 cut(s) 367, 1203
Eco24I GRGCYC 3 cut(s) 632, 789, 1070
Eco47I GGWCC 2 cut(s) 63, 812
Eco53kI GAGCTC 3 cut(s) 630, 787, 1068
Eco57I CTGAAG 2 cut(s) 138, 657
EcoICRI GAGCTC 3 cut(s) 630, 787, 1068
EcoO109I RGGNCCY 3 cut(s) 63, 103, 812
EcoRII CCWGG 1 cut(s) 381
EcoT14I CCWWGG 2 cut(s) 367, 1203
EcoT22I ATGCAT 1 cut(s) 321
EcoT38I GRGCYC 3 cut(s) 632, 789, 1070
ErhI CCWWGG 2 cut(s) 367, 1203
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 7 cut(s) 95, 211, 295, 323, 780, 793, 1207
FaqI GGGAC 1 cut(s) 49
FatI CATG 7 cut(s) 91, 207, 291, 319, 776, 789, 1203
FbaI TGATCA 1 cut(s) 828
Fnu4HI GCNGC 5 cut(s) 187, 264, 337, 756, 759
FokI GGATG 4 cut(s) 452, 1044, 1145, 1183
FriOI GRGCYC 3 cut(s) 632, 789, 1070
Fsp4HI GCNGC 5 cut(s) 187, 264, 337, 756, 759
FspBI CTAG 3 cut(s) 44, 1023, 1210
GluI GCNGC 5 cut(s) 187, 264, 337, 756, 759
GsuI CTGGAG 1 cut(s) 606
HaeIII GGCC 6 cut(s) 104, 477, 579, 605, 794, 1046
HapII CCGG 3 cut(s) 53, 174, 514
HgaI GACGC 2 cut(s) 124, 670
Hin1II CATG 7 cut(s) 95, 211, 295, 323, 780, 793, 1207
HincII GTYRAC 2 cut(s) 595, 688
HindII GTYRAC 2 cut(s) 595, 688
HinfI GANTC 6 cut(s) 372, 569, 746, 849, 950, 1087
HpaII CCGG 3 cut(s) 53, 174, 514
HphI GGTGA 4 cut(s) 537, 711, 994, 1042
Hpy166II GTNNAC 2 cut(s) 595, 688
Hpy188I TCNGA 5 cut(s) 34, 60, 118, 286, 943
Hpy188III TCNNGA 5 cut(s) 16, 236, 292, 376, 420
Hpy8I GTNNAC 2 cut(s) 595, 688
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 3 cut(s) 193, 339, 560
HpyCH4III ACNGT 4 cut(s) 85, 313, 592, 806
HpyCH4IV ACGT 2 cut(s) 507, 690
HpyCH4V TGCA 6 cut(s) 147, 207, 305, 319, 336, 758
HpyF10VI GCNNNNNNNGC 9 cut(s) 53, 86, 101, 183, 272, 325, 459, 632, 764
HpyF3I CTNAG 9 cut(s) 59, 97, 131, 413, 651, 819, 843, 1018, 1041
HpySE526I ACGT 2 cut(s) 507, 690
Hsp92II CATG 7 cut(s) 95, 211, 295, 323, 780, 793, 1207
KpnI GGTACC 1 cut(s) 392
KroI GCCGGC 2 cut(s) 52, 173
KroNI GCCGGC 2 cut(s) 54, 175
Ksp22I TGATCA 1 cut(s) 828
Kzo9I GATC 4 cut(s) 178, 705, 714, 828
LmnI GCTCC 3 cut(s) 369, 635, 872
Lsp1109I GCAGC 4 cut(s) 250, 348, 742, 770
LweI GCATC 2 cut(s) 229, 1161
MabI ACCWGGT 1 cut(s) 381
MaeI CTAG 3 cut(s) 44, 1023, 1210
MaeII ACGT 2 cut(s) 507, 690
MaeIII GTNAC 5 cut(s) 740, 838, 864, 884, 1156
MalI GATC 4 cut(s) 180, 707, 716, 830
MboI GATC 4 cut(s) 178, 705, 714, 828
MboII GAAGA 7 cut(s) 131, 435, 515, 532, 918, 921, 924
MfeI CAATTG 1 cut(s) 1095
MflI RGATCY 1 cut(s) 714
MhlI GDGCHC 3 cut(s) 632, 789, 1070
MlsI TGGCCA 1 cut(s) 605
MluCI AATT 3 cut(s) 834, 1095, 1111
MluNI TGGCCA 1 cut(s) 605
MlyI GAGTC 4 cut(s) 563, 755, 843, 959
MmeI TCCRAC 2 cut(s) 57, 183
Mox20I TGGCCA 1 cut(s) 605
Mph1103I ATGCAT 1 cut(s) 321
MreI CGCCGGCG 1 cut(s) 173
MroNI GCCGGC 2 cut(s) 52, 173
MscI TGGCCA 1 cut(s) 605
MseI TTAA 1 cut(s) 359
Msp20I TGGCCA 1 cut(s) 605
MspA1I CMGCKG 3 cut(s) 189, 263, 738
MspI CCGG 3 cut(s) 53, 174, 514
MspR9I CCNGG 1 cut(s) 383
MunI CAATTG 1 cut(s) 1095
MvaI CCWGG 1 cut(s) 383
MwoI GCNNNNNNNGC 9 cut(s) 53, 86, 101, 183, 272, 325, 459, 632, 764
NaeI GCCGGC 2 cut(s) 54, 175
NcoI CCATGG 1 cut(s) 1203
NdeII GATC 4 cut(s) 178, 705, 714, 828
NgoMIV GCCGGC 2 cut(s) 52, 173
NlaIII CATG 7 cut(s) 95, 211, 295, 323, 780, 793, 1207
NlaIV GGNNCC 4 cut(s) 65, 390, 518, 814
NmeAIII GCCGAG 1 cut(s) 555
NmuCI GTSAC 3 cut(s) 740, 838, 1156
NsiI ATGCAT 1 cut(s) 321
NspI RCATGY 1 cut(s) 323
PagI TCATGA 1 cut(s) 291
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PdiI GCCGGC 2 cut(s) 54, 175
PfeI GAWTC 2 cut(s) 372, 1087
PflFI GACNNNGTC 1 cut(s) 509
PflMI CCANNNNNTGG 1 cut(s) 382
PkrI GCNGC 5 cut(s) 188, 265, 338, 757, 760
PleI GAGTC 4 cut(s) 563, 754, 843, 958
PpsI GAGTC 4 cut(s) 563, 754, 843, 958
PpuMI RGGWCCY 2 cut(s) 63, 812
PshAI GACNNNNGTC 1 cut(s) 39
Psp124BI GAGCTC 3 cut(s) 632, 789, 1070
Psp5II RGGWCCY 2 cut(s) 63, 812
Psp6I CCWGG 1 cut(s) 381
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 4 cut(s) 65, 390, 518, 814
PspPI GGNCC 3 cut(s) 63, 103, 812
PspPPI RGGWCCY 2 cut(s) 63, 812
PsrI GAACNNNNNNTAC 2 cut(s) 889, 921
PstI CTGCAG 2 cut(s) 307, 760
PstNI CAGNNNCTG 6 cut(s) 138, 302, 311, 382, 658, 680
PsuI RGATCY 1 cut(s) 714
PsyI GACNNNGTC 1 cut(s) 509
PvuII CAGCTG 1 cut(s) 738
RsaI GTAC 4 cut(s) 390, 824, 898, 973
RsaNI GTAC 4 cut(s) 389, 823, 897, 972
SacI GAGCTC 3 cut(s) 632, 789, 1070
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 5 cut(s) 187, 264, 337, 756, 759
Sau3AI GATC 4 cut(s) 178, 705, 714, 828
Sau96I GGNCC 3 cut(s) 63, 103, 812
ScaI AGTACT 2 cut(s) 824, 898
SchI GAGTC 4 cut(s) 563, 755, 843, 959
ScrFI CCNGG 1 cut(s) 383
SduI GDGCHC 3 cut(s) 632, 789, 1070
SexAI ACCWGGT 1 cut(s) 381
SfaNI GCATC 2 cut(s) 229, 1161
SfcI CTRYAG 2 cut(s) 303, 756
SgrAI CRCCGGYG 1 cut(s) 173
SinI GGWCC 2 cut(s) 63, 812
SmlI CTYRAG 2 cut(s) 16, 234
SmoI CTYRAG 2 cut(s) 16, 234
Sse9I AATT 3 cut(s) 834, 1095, 1111
SsiI CCGC 4 cut(s) 78, 187, 261, 633
SspMI CTAG 3 cut(s) 44, 1023, 1210
SstI GAGCTC 3 cut(s) 632, 789, 1070
StyD4I CCNGG 1 cut(s) 381
StyI CCWWGG 2 cut(s) 367, 1203
TaaI ACNGT 4 cut(s) 85, 313, 592, 806
TaiI ACGT 2 cut(s) 510, 693
TaqI TCGA 2 cut(s) 213, 567
TasI AATT 3 cut(s) 834, 1095, 1111
TatI WGTACW 2 cut(s) 822, 896
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 2 cut(s) 372, 1087
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TscAI CASTG 4 cut(s) 12, 188, 595, 681
TseFI GTSAC 3 cut(s) 740, 838, 1156
TseI GCWGC 4 cut(s) 263, 336, 755, 758
Tsp45I GTSAC 3 cut(s) 740, 838, 1156
TspDTI ATGAA 1 cut(s) 924
TspRI CASTG 4 cut(s) 12, 188, 595, 681
Tth111I GACNNNGTC 1 cut(s) 509
Van91I CCANNNNNTGG 1 cut(s) 382
VpaK11BI GGWCC 2 cut(s) 63, 812
XceI RCATGY 1 cut(s) 323
XcmI CCANNNNNNNNNTGG 1 cut(s) 1069
XspI CTAG 3 cut(s) 44, 1023, 1210
ZrmI AGTACT 2 cut(s) 824, 898
Zsp2I ATGCAT 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.