Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003827

Physical Location & Seq

Genomic Coordinates Reverse (-)

44052091 .. 44060084

Gene Structure 7994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAGGTTTTCACGTCGAACGGAGCTTCGCCGTTTTCTGGAAATTTTCCGGCCAAACCGTGGCTTCTAGCAGCTCTAGTTTCAACAGGGGAGTCTCTAATCTCTGTTTCCTCCGTTTTCAGCTTACTAAAAGCCATTGATCTAATGCTCAAAGGAATCCAGAACCTGGTCGTACCAATCCAAACCAGGCAAAGCAGCAACTCAAGAAGAAAGCAATACCCAAAACCCATCAACAGCACCACAAGCACCATCCACAACGGACAAGAGTTCTGCTGGCTCACACGGGAAGATGTAGTCCGGTTCCTCCTCATGTCTACCCAAAACAGCTCATCCTCACTCCTCCTCCTCCTACTCCCCACCGTCTCCCCCGAGAAATTAGACACAAACCCAGTTCTCTTGGCCCATGATTTCAGCTCTCTCGGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

142

Amino Acids

15.53

Weight (kDa)

8.93

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27460 AT5G53750
fragaria_vesca	FvH4_3g20540 FvH4_3g20550
malus_domestica	MD03G1224200.v1.1 MD11G1242900.v1.1
prunus_persica	Prupe.4G185300_v2.0.a1
pyrus_communis	pycom03g17260 pycom11g21370
rosa_chinensis	RchiOBHm_Chr5g0034461 RchiOBHm_Chr5g0034541 RchiOBHm_Chr6g0280011
rosa_laevigata	RLG00000033551 RLG00000033553
rosa_multiflora	Rmu_sc0006060.1_g000004 Rmu_sc0007995.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045780 Rroxscaffold_1G00045840 Rroxscaffold_2G00138100 Rroxscaffold_4G00318160
rosa_rugosa	Rorug05G0146300
rosa_samantha	Rh5AG238400 Rh5BG238500 Rh5BG238700 Rh5BG239000 Rh5CG269400 Rh5DG246500 Rh5DG246800 Rh5DG247200 Rh6CG244900 Rh6DG235700
rosa_wichuraiana	Rw5G021750 Rw5G021770 Rw5G021840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	60, 166
AccI	GTMKAC	1 cut(s)	314
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	43
AfaI	GTAC	1 cut(s)	174
AfiI	CCNNNNNNNGG	3 cut(s)	38, 60, 166
AgsI	TTSAA	1 cut(s)	84
AjiI	CACGTC	1 cut(s)	15
AjnI	CCWGG	2 cut(s)	165, 185
AluBI	AGCT	5 cut(s)	26, 74, 123, 327, 414
AluI	AGCT	5 cut(s)	26, 74, 123, 327, 414
Alw26I	GTCTC	2 cut(s)	99, 367
AlwNI	CAGNNNCTG	1 cut(s)	166
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	2 cut(s)	51, 399
ApeKI	GCWGC	2 cut(s)	71, 195
ApoI	RAATTY	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	400
AvaI	CYCGRG	1 cut(s)	368
BbvI	GCAGC	2 cut(s)	83, 207
BccI	CCATC	2 cut(s)	236, 257
BceAI	ACGGC	1 cut(s)	16
BciT130I	CCWGG	2 cut(s)	167, 187
BcoDI	GTCTC	2 cut(s)	99, 367
BfaI	CTAG	2 cut(s)	68, 77
BisI	GCNGC	2 cut(s)	72, 196
BlsI	GCNGC	2 cut(s)	73, 197
Bme1390I	CCNGG	2 cut(s)	167, 187
BmeT110I	CYCGRG	1 cut(s)	368
BmgBI	CACGTC	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	302
BmrFI	CCNGG	2 cut(s)	167, 187
BmrI	ACTGGG	1 cut(s)	383
BmuI	ACTGGG	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	59
BsaWI	WCCGGW	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 60, 166
Bse1I	ACTGG	1 cut(s)	389
BseBI	CCWGG	2 cut(s)	167, 187
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	2 cut(s)	249, 329
BseLI	CCNNNNNNNGG	3 cut(s)	38, 60, 166
BseNI	ACTGG	1 cut(s)	389
BseRI	GAGGAG	4 cut(s)	296, 329, 332, 335
BseXI	GCAGC	2 cut(s)	83, 207
BshFI	GGCC	2 cut(s)	53, 401
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	50, 298
BslI	CCNNNNNNNGG	3 cut(s)	38, 60, 166
BsmAI	GTCTC	2 cut(s)	99, 367
BsmBI	CGTCTC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	53, 401
BsoBI	CYCGRG	1 cut(s)	368
Bsp143I	GATC	1 cut(s)	139
BspANI	GGCC	2 cut(s)	53, 401
BspLI	GGNNCC	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	389
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	1 cut(s)	139
Bst2UI	CCWGG	2 cut(s)	167, 187
Bst4CI	ACNGT	2 cut(s)	60, 361
BstC8I	GCNNGC	1 cut(s)	275
BstDSI	CCRYGG	1 cut(s)	59
BstF5I	GGATG	2 cut(s)	249, 329
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	2 cut(s)	99, 367
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	243
BstNI	CCWGG	2 cut(s)	167, 187
BstSCI	CCNGG	2 cut(s)	165, 185
BstV1I	GCAGC	2 cut(s)	83, 207
BsuRI	GGCC	2 cut(s)	53, 401
BtgI	CCRYGG	1 cut(s)	59
BtrI	CACGTC	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	249, 329
Cac8I	GCNNGC	1 cut(s)	275
CaiI	CAGNNNCTG	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	400
CsiI	ACCWGGT	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	173
CviAII	CATG	2 cut(s)	310, 404
CviQI	GTAC	1 cut(s)	173
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	368
EcoRII	CCWGG	2 cut(s)	165, 185
Esp3I	CGTCTC	1 cut(s)	367
FaeI	CATG	2 cut(s)	313, 407
FaiI	YATR	2 cut(s)	311, 405
FatI	CATG	2 cut(s)	309, 403
FblI	GTMKAC	1 cut(s)	314
Fnu4HI	GCNGC	2 cut(s)	72, 196
FokI	GGATG	2 cut(s)	236, 316
Fsp4HI	GCNGC	2 cut(s)	72, 196
FspBI	CTAG	2 cut(s)	68, 77
GluI	GCNGC	2 cut(s)	72, 196
HaeIII	GGCC	2 cut(s)	53, 401
HapII	CCGG	2 cut(s)	50, 298
Hin1II	CATG	2 cut(s)	313, 407
HinfI	GANTC	2 cut(s)	92, 156
HpaII	CCGG	2 cut(s)	50, 298
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	1 cut(s)	422
Hpy188III	TCNNGA	3 cut(s)	39, 160, 204
Hpy8I	GTNNAC	1 cut(s)	315
Hpy99I	CGWCG	1 cut(s)	19
HpyCH4III	ACNGT	2 cut(s)	60, 361
HpyCH4IV	ACGT	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	313, 407
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	2 cut(s)	83, 207
MabI	ACCWGGT	1 cut(s)	165
MaeI	CTAG	2 cut(s)	68, 77
MaeII	ACGT	1 cut(s)	14
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	2 cut(s)	219, 299
MluCI	AATT	2 cut(s)	43, 374
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	7 cut(s)	121, 314, 317, 343, 350, 353, 356
MspI	CCGG	2 cut(s)	50, 298
MspR9I	CCNGG	2 cut(s)	167, 187
MvaI	CCWGG	2 cut(s)	167, 187
MwoI	GCNNNNNNNGC	1 cut(s)	243
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	2 cut(s)	313, 407
NlaIV	GGNNCC	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	156
PflMI	CCANNNNNTGG	2 cut(s)	60, 166
PkrI	GCNGC	2 cut(s)	73, 197
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	2 cut(s)	165, 185
PspGI	CCWGG	2 cut(s)	165, 185
PspN4I	GGNNCC	1 cut(s)	302
PspPI	GGNCC	1 cut(s)	400
PstNI	CAGNNNCTG	1 cut(s)	166
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
SatI	GCNGC	2 cut(s)	72, 196
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	1 cut(s)	400
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	167, 187
SetI	ASST	8 cut(s)	9, 17, 28, 76, 125, 168, 329, 416
SexAI	ACCWGGT	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
Sse9I	AATT	2 cut(s)	43, 374
SspMI	CTAG	2 cut(s)	68, 77
StyD4I	CCNGG	2 cut(s)	165, 185
TaaI	ACNGT	2 cut(s)	60, 361
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	1 cut(s)	17
TasI	AATT	2 cut(s)	43, 374
TfiI	GAWTC	1 cut(s)	156
TseI	GCWGC	2 cut(s)	71, 195
TspGWI	ACGGA	3 cut(s)	36, 103, 273
Van91I	CCANNNNNTGG	2 cut(s)	60, 166
XapI	RAATTY	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	314
XspI	CTAG	2 cut(s)	68, 77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.