Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003827

Physical Location & Seq

Genomic Coordinates Reverse (-)

10984675 .. 10986793

Gene Structure 2119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G185300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGCAGTGAGCTTCTTGAGGTACGAGGTATCTGACCTCTGTCTAGCCAAGCCGGCCCTGAGGTCCCTCTCTGCCTCCGCCACAGTTGCTGATGCCTTAGAGGCCTTGAAGACATGTGAGGAAAACTTCATCAGTGTCTGGGACTGCAACCACCCCAAAACTACCAGATCTCTAGACGCTGGCCAGCTGTGCCGCTGTGTTGGCAAGGTCTGCATGGTTGATGTCATCTGCTATCTCTGTAAAGACGACAACTTGGTGTCTCCATCTGCTGCTCTCAAGGCACCTGTCTCTGCAATTTTGTCTAAGATTCCTGGCCAAGTGATGCATGTGGAACCCTCTTGCAGCCTACTTGCAGCCATTGATCTGATCCTCCAGGGAGTCCAGAACTTGGTAGTACCAATAAGAACCAGGCTAAGCAGCAGTTCAAGAAGAAAACAACACCCAAAATGCACCACCACCACCTTCCACAATGGCCAAGAGTTCTGCTGGCTGACACAAGAAGATGTAGTCCGATTTCTCCTCAGCTCAATTGGCCTCTTCTCTCCCATCCCAGCTTTCTCCATGGACTCTCTTGGCATTATCAGCACCGAAATCTTAGCCATCAACTACCACTCCTCAGCAAACTCAGCCCTGCAGCTCATATCCCAATCACTTTCTCAGCAGACCTCTGTGGCTGTGGTAGACTCCGAGGGGGTCTTGATTGGTGAGATCTCACCCTTCACCCTTGCCTGCTGTGATGAGTCAGTGGCTGCAGCCATCACCACTCTCTCAGCTGGAGACCTCATGTCCTACATTGATTGTGGTGGACCCCCTGAGCACTTGGTTAGGGTTGTGATGGAGAGATTGAAGGAGAGAAAGCTACAAGGGGTGTTGGAAAATTACACATTAACTTCATCAAGTTCTTATGCACATTCATTGATGTCTTCTTCATCAGATGAAGAGTCTTCTGTGTCTCCAAATACCACTTTGCAGCCAAGGTCTGGTAAATACAGTAGGTCCAGTAGCTACTCAGCTAGAATGGTGAGGAGGGCTGAGGCCATAGTTTGCCATCCCAAGAGCTCATTGGTAGCTGTGATGATTCAAGCAATTGCTCACAGAGTGAACTATGTGTGGGTTATTGAGGATGATTGTAGCTTGGTGGGAATTGTCACTTTTTCTGGCATGTTAAAAGTTTTCAGGGAACACTTGGAGACCATGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

401

Amino Acids

43.38

Weight (kDa)

6.07

Isoelectric Point (pI)

57.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27460 AT5G53750
fragaria_vesca	FvH4_3g20540 FvH4_3g20550
malus_domestica	MD03G1224200.v1.1 MD11G1242900.v1.1
prunus_persica	Prupe.4G185300_v2.0.a1
pyrus_communis	pycom03g17260 pycom11g21370
rosa_chinensis	RchiOBHm_Chr5g0034461 RchiOBHm_Chr5g0034541 RchiOBHm_Chr6g0280011
rosa_laevigata	RLG00000033551 RLG00000033553
rosa_multiflora	Rmu_sc0006060.1_g000004 Rmu_sc0007995.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045780 Rroxscaffold_1G00045840 Rroxscaffold_2G00138100 Rroxscaffold_4G00318160
rosa_rugosa	Rorug05G0146300
rosa_samantha	Rh5AG238400 Rh5BG238500 Rh5BG238700 Rh5BG239000 Rh5CG269400 Rh5DG246500 Rh5DG246800 Rh5DG247200 Rh6CG244900 Rh6DG235700
rosa_wichuraiana	Rw5G021750 Rw5G021770 Rw5G021840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	280
AccB7I	CCANNNNNTGG	2 cut(s)	388, 980
AccI	GTMKAC	1 cut(s)	681
AciI	CCGC	2 cut(s)	78, 193
AclWI	GGATC	1 cut(s)	361
AcoI	YGGCCR	3 cut(s)	181, 313, 472
AdeI	CACNNNGTG	1 cut(s)	1099
AfaI	GTAC	2 cut(s)	23, 396
AfiI	CCNNNNNNNGG	2 cut(s)	388, 980
AflIII	ACRYGT	1 cut(s)	113
AgsI	TTSAA	4 cut(s)	109, 426, 847, 1082
AhdI	GACNNNNNGTC	1 cut(s)	784
AjnI	CCWGG	3 cut(s)	310, 372, 407
Alw21I	GWGCWC	2 cut(s)	819, 1061
Alw26I	GTCTC	5 cut(s)	264, 292, 771, 957, 1184
AlwI	GGATC	1 cut(s)	361
AlwNI	CAGNNNCTG	3 cut(s)	89, 138, 749
AoxI	GGCC	8 cut(s)	54, 102, 181, 313, 472, 532, 1035, 1197
ApeKI	GCWGC	8 cut(s)	269, 342, 353, 417, 634, 749, 752, 970
AspS9I	GGNCC	4 cut(s)	55, 63, 806, 996
AsuHPI	GGTGA	5 cut(s)	705, 712, 716, 751, 1033
AvaII	GGWCC	3 cut(s)	63, 806, 996
AxyI	CCTNAGG	1 cut(s)	59
BalI	TGGCCA	3 cut(s)	183, 315, 474
BanI	GGYRCC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	1061
BbsI	GAAGAC	3 cut(s)	116, 915, 936
Bbv12I	GWGCWC	2 cut(s)	819, 1061
BbvCI	CCTCAGC	3 cut(s)	521, 616, 1032
BbvI	GCAGC	8 cut(s)	256, 354, 365, 429, 646, 736, 764, 982
BccI	CCATC	6 cut(s)	271, 554, 608, 764, 829, 1056
BciT130I	CCWGG	3 cut(s)	312, 374, 409
BcoDI	GTCTC	5 cut(s)	264, 292, 771, 957, 1184
BfaI	CTAG	4 cut(s)	44, 173, 1014, 1201
BfmI	CTRYAG	2 cut(s)	632, 750
BglI	GCCNNNNNGGC	2 cut(s)	53, 101
BglII	AGATCT	2 cut(s)	167, 708
BisI	GCNGC	9 cut(s)	193, 270, 343, 354, 418, 635, 750, 753, 971
BlpI	GCTNAGC	1 cut(s)	413
BlsI	GCNGC	9 cut(s)	194, 271, 344, 355, 419, 636, 751, 754, 972
Bme1390I	CCNGG	3 cut(s)	312, 374, 409
Bme18I	GGWCC	3 cut(s)	63, 806, 996
BmeRI	GACNNNNNGTC	1 cut(s)	784
BmgT120I	GGNCC	4 cut(s)	55, 63, 806, 996
BmiI	GGNNCC	4 cut(s)	65, 282, 333, 808
BmrFI	CCNGG	3 cut(s)	312, 374, 409
BmsI	GCATC	2 cut(s)	82, 312
BoxI	GACNNNNGTC	1 cut(s)	39
BpiI	GAAGAC	3 cut(s)	116, 915, 936
BpmI	CTGGAG	2 cut(s)	356, 795
Bpu10I	CCTNAGC	4 cut(s)	521, 616, 813, 1032
Bpu1102I	GCTNAGC	1 cut(s)	413
BpuEI	CTTGAG	2 cut(s)	37, 260
BsaI	GGTCTC	2 cut(s)	771, 1184
BsaJI	CCNNGG	5 cut(s)	373, 561, 687, 974, 1194
BsaXI	ACNNNNNCTCC	2 cut(s)	596, 626
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 980
Bse118I	RCCGGY	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	999
Bse21I	CCTNAGG	1 cut(s)	59
BseBI	CCWGG	3 cut(s)	312, 374, 409
BseDI	CCNNGG	5 cut(s)	373, 561, 687, 974, 1194
BseGI	GGATG	3 cut(s)	546, 1048, 1129
BseLI	CCNNNNNNNGG	2 cut(s)	388, 980
BseMII	CTCAG	9 cut(s)	50, 535, 630, 639, 671, 783, 804, 1023, 1023
BseNI	ACTGG	1 cut(s)	999
BseRI	GAGGAG	3 cut(s)	509, 604, 1039
BseXI	GCAGC	8 cut(s)	256, 354, 365, 429, 646, 736, 764, 982
BseYI	CCCAGC	1 cut(s)	550
BshFI	GGCC	8 cut(s)	56, 104, 183, 315, 474, 534, 1037, 1199
BshNI	GGYRCC	1 cut(s)	280
BsiHKAI	GWGCWC	2 cut(s)	819, 1061
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	2 cut(s)	49, 155
BslI	CCNNNNNNNGG	2 cut(s)	388, 980
BsmAI	GTCTC	5 cut(s)	264, 292, 771, 957, 1184
BsmFI	GGGAC	2 cut(s)	49, 155
BsnI	GGCC	8 cut(s)	56, 104, 183, 315, 474, 534, 1037, 1199
Bso31I	GGTCTC	2 cut(s)	771, 1184
Bsp1286I	GDGCHC	2 cut(s)	819, 1061
Bsp143I	GATC	4 cut(s)	167, 361, 366, 708
Bsp1720I	GCTNAGC	1 cut(s)	413
Bsp19I	CCATGG	2 cut(s)	561, 1194
BspACI	CCGC	2 cut(s)	78, 193
BspANI	GGCC	8 cut(s)	56, 104, 183, 315, 474, 534, 1037, 1199
BspCNI	CTCAG	9 cut(s)	51, 534, 629, 638, 670, 782, 805, 1022, 1024
BspLI	GGNNCC	4 cut(s)	65, 282, 333, 808
BspMAI	CTGCAG	2 cut(s)	636, 754
BspPI	GGATC	1 cut(s)	361
BspT107I	GGYRCC	1 cut(s)	280
BspTNI	GGTCTC	2 cut(s)	771, 1184
BsrFI	RCCGGY	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	999
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	5 cut(s)	373, 561, 687, 974, 1194
BssMI	GATC	4 cut(s)	167, 361, 366, 708
BssT1I	CCWWGG	3 cut(s)	561, 974, 1194
Bst2UI	CCWGG	3 cut(s)	312, 374, 409
Bst4CI	ACNGT	2 cut(s)	85, 992
Bst6I	CTCTTC	2 cut(s)	542, 933
BstAPI	GCANNNNNTGC	1 cut(s)	210
BstC8I	GCNNGC	5 cut(s)	54, 181, 185, 488, 730
BstDSI	CCRYGG	2 cut(s)	561, 1194
BstF5I	GGATG	3 cut(s)	546, 1048, 1129
BstKTI	GATC	4 cut(s)	170, 364, 369, 711
BstMAI	GTCTC	5 cut(s)	264, 292, 771, 957, 1184
BstMBI	GATC	4 cut(s)	167, 361, 366, 708
BstNI	CCWGG	3 cut(s)	312, 374, 409
BstNSI	RCATGY	3 cut(s)	117, 329, 1165
BstPAI	GACNNNNGTC	1 cut(s)	39
BstSCI	CCNGG	3 cut(s)	310, 372, 407
BstSFI	CTRYAG	2 cut(s)	632, 750
BstV1I	GCAGC	8 cut(s)	256, 354, 365, 429, 646, 736, 764, 982
BstV2I	GAAGAC	3 cut(s)	116, 915, 936
BstX2I	RGATCY	2 cut(s)	167, 708
BstYI	RGATCY	2 cut(s)	167, 708
Bsu36I	CCTNAGG	1 cut(s)	59
BsuRI	GGCC	8 cut(s)	56, 104, 183, 315, 474, 534, 1037, 1199
BtgI	CCRYGG	2 cut(s)	561, 1194
BtsCI	GGATG	3 cut(s)	546, 1048, 1129
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	3 cut(s)	12, 139, 750
Cac8I	GCNNGC	5 cut(s)	54, 181, 185, 488, 730
CaiI	CAGNNNCTG	3 cut(s)	89, 138, 749
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	4 cut(s)	55, 63, 806, 996
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	22, 395
CviAII	CATG	7 cut(s)	114, 214, 326, 562, 784, 1162, 1195
CviQI	GTAC	2 cut(s)	22, 395
DpnI	GATC	4 cut(s)	169, 363, 368, 710
DpnII	GATC	4 cut(s)	167, 361, 366, 708
DraIII	CACNNNGTG	1 cut(s)	1099
DriI	GACNNNNNGTC	1 cut(s)	784
EaeI	YGGCCR	3 cut(s)	181, 313, 472
Eam1104I	CTCTTC	2 cut(s)	542, 933
Eam1105I	GACNNNNNGTC	1 cut(s)	784
EarI	CTCTTC	2 cut(s)	542, 933
EciI	GGCGGA	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	1059
Eco130I	CCWWGG	3 cut(s)	561, 974, 1194
Eco147I	AGGCCT	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	1061
Eco31I	GGTCTC	2 cut(s)	771, 1184
Eco47I	GGWCC	3 cut(s)	63, 806, 996
Eco53kI	GAGCTC	1 cut(s)	1059
Eco81I	CCTNAGG	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	1059
EcoO109I	RGGNCCY	1 cut(s)	63
EcoRII	CCWGG	3 cut(s)	310, 372, 407
EcoT14I	CCWWGG	3 cut(s)	561, 974, 1194
EcoT22I	ATGCAT	1 cut(s)	327
EcoT38I	GRGCYC	1 cut(s)	1061
ErhI	CCWWGG	3 cut(s)	561, 974, 1194
FaeI	CATG	7 cut(s)	117, 217, 329, 565, 787, 1165, 1198
FaqI	GGGAC	2 cut(s)	49, 155
FatI	CATG	7 cut(s)	113, 213, 325, 561, 783, 1161, 1194
FblI	GTMKAC	1 cut(s)	681
Fnu4HI	GCNGC	9 cut(s)	193, 270, 343, 354, 418, 635, 750, 753, 971
FokI	GGATG	3 cut(s)	533, 1035, 1136
FriOI	GRGCYC	1 cut(s)	1061
Fsp4HI	GCNGC	9 cut(s)	193, 270, 343, 354, 418, 635, 750, 753, 971
FspBI	CTAG	4 cut(s)	44, 173, 1014, 1201
GluI	GCNGC	9 cut(s)	193, 270, 343, 354, 418, 635, 750, 753, 971
GsaI	CCCAGC	1 cut(s)	554
GsuI	CTGGAG	2 cut(s)	356, 795
HaeIII	GGCC	8 cut(s)	56, 104, 183, 315, 474, 534, 1037, 1199
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	7 cut(s)	117, 217, 329, 565, 787, 1165, 1198
HinfI	GANTC	7 cut(s)	307, 378, 566, 683, 740, 941, 1078
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	5 cut(s)	705, 712, 716, 751, 1033
Hpy166II	GTNNAC	3 cut(s)	682, 806, 1102
Hpy188I	TCNGA	5 cut(s)	34, 366, 512, 688, 934
Hpy188III	TCNNGA	5 cut(s)	16, 173, 382, 426, 697
Hpy8I	GTNNAC	3 cut(s)	682, 806, 1102
HpyAV	CCTTC	3 cut(s)	472, 727, 841
HpyCH4III	ACNGT	2 cut(s)	85, 992
Hsp92II	CATG	7 cut(s)	117, 217, 329, 565, 787, 1165, 1198
KroI	GCCGGC	1 cut(s)	52
KroNI	GCCGGC	1 cut(s)	54
Kzo9I	GATC	4 cut(s)	167, 361, 366, 708
Lsp1109I	GCAGC	8 cut(s)	256, 354, 365, 429, 646, 736, 764, 982
LweI	GCATC	2 cut(s)	82, 312
MaeI	CTAG	4 cut(s)	44, 173, 1014, 1201
MaeIII	GTNAC	1 cut(s)	1147
MalI	GATC	4 cut(s)	169, 363, 368, 710
MboI	GATC	4 cut(s)	167, 361, 366, 708
MboII	GAAGA	8 cut(s)	121, 441, 512, 529, 915, 918, 936, 950
MfeI	CAATTG	2 cut(s)	528, 1086
MflI	RGATCY	2 cut(s)	167, 708
MhlI	GDGCHC	2 cut(s)	819, 1061
MlsI	TGGCCA	3 cut(s)	183, 315, 474
MluCI	AATT	5 cut(s)	294, 528, 877, 1086, 1143
MluNI	TGGCCA	3 cut(s)	183, 315, 474
MlyI	GAGTC	5 cut(s)	387, 560, 677, 749, 950
MmeI	TCCRAC	1 cut(s)	852
Mox20I	TGGCCA	3 cut(s)	183, 315, 474
Mph1103I	ATGCAT	1 cut(s)	327
MroNI	GCCGGC	1 cut(s)	52
MscI	TGGCCA	3 cut(s)	183, 315, 474
MseI	TTAA	2 cut(s)	887, 1166
Msp20I	TGGCCA	3 cut(s)	183, 315, 474
MspA1I	CMGCKG	3 cut(s)	187, 195, 773
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	3 cut(s)	312, 374, 409
MunI	CAATTG	2 cut(s)	528, 1086
MvaI	CCWGG	3 cut(s)	312, 374, 409
NaeI	GCCGGC	1 cut(s)	54
NcoI	CCATGG	2 cut(s)	561, 1194
NdeII	GATC	4 cut(s)	167, 361, 366, 708
NgoMIV	GCCGGC	1 cut(s)	52
NlaIII	CATG	7 cut(s)	117, 217, 329, 565, 787, 1165, 1198
NlaIV	GGNNCC	4 cut(s)	65, 282, 333, 808
NmuCI	GTSAC	1 cut(s)	1147
NsiI	ATGCAT	1 cut(s)	327
NspI	RCATGY	3 cut(s)	117, 329, 1165
PceI	AGGCCT	1 cut(s)	104
PciI	ACATGT	1 cut(s)	113
PdiI	GCCGGC	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	307, 1078
PflMI	CCANNNNNTGG	2 cut(s)	388, 980
PkrI	GCNGC	9 cut(s)	194, 271, 344, 355, 419, 636, 751, 754, 972
PleI	GAGTC	5 cut(s)	386, 560, 677, 748, 949
PpsI	GAGTC	5 cut(s)	386, 560, 677, 748, 949
PpuMI	RGGWCCY	1 cut(s)	63
PscI	ACATGT	1 cut(s)	113
PshAI	GACNNNNGTC	1 cut(s)	39
Psp124BI	GAGCTC	1 cut(s)	1061
Psp5II	RGGWCCY	1 cut(s)	63
Psp6I	CCWGG	3 cut(s)	310, 372, 407
PspFI	CCCAGC	1 cut(s)	550
PspGI	CCWGG	3 cut(s)	310, 372, 407
PspN4I	GGNNCC	4 cut(s)	65, 282, 333, 808
PspPI	GGNCC	4 cut(s)	55, 63, 806, 996
PspPPI	RGGWCCY	1 cut(s)	63
PstI	CTGCAG	2 cut(s)	636, 754
PstNI	CAGNNNCTG	3 cut(s)	89, 138, 749
PsuI	RGATCY	2 cut(s)	167, 708
PvuII	CAGCTG	2 cut(s)	187, 773
RsaI	GTAC	2 cut(s)	23, 396
RsaNI	GTAC	2 cut(s)	22, 395
SacI	GAGCTC	1 cut(s)	1061
SaqAI	TTAA	2 cut(s)	887, 1166
SatI	GCNGC	9 cut(s)	193, 270, 343, 354, 418, 635, 750, 753, 971
Sau3AI	GATC	4 cut(s)	167, 361, 366, 708
Sau96I	GGNCC	4 cut(s)	55, 63, 806, 996
SchI	GAGTC	5 cut(s)	387, 560, 677, 749, 950
ScrFI	CCNGG	3 cut(s)	312, 374, 409
SduI	GDGCHC	2 cut(s)	819, 1061
SfaNI	GCATC	2 cut(s)	82, 312
SfcI	CTRYAG	2 cut(s)	632, 750
SinI	GGWCC	3 cut(s)	63, 806, 996
SmlI	CTYRAG	2 cut(s)	16, 275
SmoI	CTYRAG	2 cut(s)	16, 275
Sse9I	AATT	5 cut(s)	294, 528, 877, 1086, 1143
SseBI	AGGCCT	1 cut(s)	104
SsiI	CCGC	2 cut(s)	78, 193
SspMI	CTAG	4 cut(s)	44, 173, 1014, 1201
SstI	GAGCTC	1 cut(s)	1061
StuI	AGGCCT	1 cut(s)	104
StyD4I	CCNGG	3 cut(s)	310, 372, 407
StyI	CCWWGG	3 cut(s)	561, 974, 1194
TaaI	ACNGT	2 cut(s)	85, 992
TasI	AATT	5 cut(s)	294, 528, 877, 1086, 1143
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	2 cut(s)	307, 1078
Tru1I	TTAA	2 cut(s)	887, 1166
Tru9I	TTAA	2 cut(s)	887, 1166
TscAI	CASTG	3 cut(s)	12, 139, 750
TseFI	GTSAC	1 cut(s)	1147
TseI	GCWGC	8 cut(s)	269, 342, 353, 417, 634, 749, 752, 970
Tsp45I	GTSAC	1 cut(s)	1147
TspDTI	ATGAA	5 cut(s)	118, 882, 903, 918, 951
TspRI	CASTG	3 cut(s)	12, 139, 750
Van91I	CCANNNNNTGG	2 cut(s)	388, 980
VpaK11BI	GGWCC	3 cut(s)	63, 806, 996
XbaI	TCTAGA	1 cut(s)	172
XceI	RCATGY	3 cut(s)	117, 329, 1165
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1060
XmiI	GTMKAC	1 cut(s)	681
XspI	CTAG	4 cut(s)	44, 173, 1014, 1201
Zsp2I	ATGCAT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.