RchiOBHm_Chr5g0034461

CBS domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
28316798 .. 28318726
1929 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31346

Sequence Viewer

Length: 1320 bp
ATGACCACCATCATTACTCCACAACCTCACCAGCTCCTCTGCTTCTTTTACATCGTCTTCTTCAACCTTTCCTCCTCACTTCTCCATTGTTTCCTTCCGTCTTGCATGGCAGTGAGCTTCTTGAGGCACGAGGTATCCGACCTCTGTCTAGCCAAGCCGGCTCTGAGGTCCCTGTCCGTCTCCGCCACCGTCGCCGATGCCTTAGAGGCCCTCAAAACCTCCGAAGAAAACTTCCTCAGCATTTGGGATTGCAACCACCACTCCAAAACCCTCGCCGGCGAACAGTGCCGCTGCGTCGGGAAGGTCTGCATGGTCGATGTGATTTGCTACCTTTCCCAAGATGCCAACCTCGTGTCTCCCTCCGCTGCTCTAAAGGCACCCGTCTCTGAAACCATGACAGAGACTGCAGGAACCGTGATGCACGTAGAGCCTTCTTGCAGCTTACTAAAAGCCATTGATCTAATGCTCCAAGGAATCCAGAACCTGGTGGTACCAATCCAAACCAGGCAAAGCAGCAACTCAAGAAGAAAGCAACACCCAAAACCCATCAACAGCACCACAAGCACCATCCACAACGGACAAGAGTTCTGCTGGCTCACACAGGAAGACGTAGTCCGGTTCCTCCTCAACTCTATTGGGGTCTTCTCACCCCTTCCTGCTCTCTCAATCGACTCACTCGGCCTCATCAACACCGCTGACATCTTGGCCATCAACTACCACTCCCCGGCTGACTCCGCCGTCCGGCTCATAACTCAGTCGCTGACACAACAAACCTCAGTGGCGGTTGTGGACATTGATGGTGTGTTAATCGGCGAGATCTCGCCTTTTACTCTTTCCAGCTGTGACGAGTCGGTGGCTGCAGCCATCGCCACTCTGTCATGCGGAGAGCTCATGGCCTACATTGACTGTGGAGGACCCCCTGAGTACTTGATCAAGATTGTGACTGAGAGACTCAAACAGAGGAAATTACAAGGAGCTTTGGAGAGTTACTCATCAAGTACTTCAAGTTCCAATTCACCAATGTTTTCTTCTTCTTCTTCTTCATCATCAGATGAGGAGTCCTCAGTATATCCAAGTAGCACCAGAATGGTGAGGTCTGGGAGGTTCAGCAGGTCTAACAGCTACTCAGCTAGGATGGTGAGGAGGGCTGAGGCTATAGTGTGTCATCCCAAGAGCTCGTTGGTGGCTGTGATGATTCAGGCAATTGCTCACAGAGTGAACTATGTTTGGGTTATTGAGGATGATTGCAGCCTTGTGGGGATTGTCACTTTTTCTGGGATGTTAAAGGTTTTCAGGGAGCATTTGGAAACCATGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

439

Amino Acids

47.77

Weight (kDa)

5.95

Isoelectric Point (pI)

56.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 737
Acc36I ACCTGC 1 cut(s) 1101
Acc65I GGTACC 1 cut(s) 490
AccB1I GGYRCC 2 cut(s) 376, 490
AccB7I CCANNNNNTGG 1 cut(s) 484
AciI CCGC 7 cut(s) 183, 289, 363, 693, 735, 782, 882
AcoI YGGCCR 1 cut(s) 705
AdeI CACNNNGTG 1 cut(s) 1216
AfaI GTAC 3 cut(s) 492, 926, 1000
AfiI CCNNNNNNNGG 3 cut(s) 484, 724, 741
AgsI TTSAA 2 cut(s) 64, 1005
AjnI CCWGG 2 cut(s) 483, 503
AjuI GAANNNNNNNTTGG 2 cut(s) 1012, 1044
AluBI AGCT 9 cut(s) 34, 117, 441, 840, 889, 977, 1122, 1130, 1176
AluI AGCT 9 cut(s) 34, 117, 441, 840, 889, 977, 1122, 1130, 1176
Alw21I GWGCWC 2 cut(s) 891, 1178
Alw26I GTCTC 5 cut(s) 184, 360, 388, 395, 943
AlwNI CAGNNNCTG 3 cut(s) 404, 484, 760
AoxI GGCC 4 cut(s) 207, 679, 705, 894
ApeKI GCWGC 7 cut(s) 291, 365, 438, 513, 857, 860, 1248
Asp718I GGTACC 1 cut(s) 490
AspS9I GGNCC 3 cut(s) 168, 208, 914
AsuC2I CCSGG 1 cut(s) 725
AsuHPI GGTGA 5 cut(s) 20, 639, 1008, 1102, 1150
AvaII GGWCC 2 cut(s) 168, 914
BalI TGGCCA 1 cut(s) 707
BanI GGYRCC 2 cut(s) 376, 490
BanII GRGCYC 2 cut(s) 891, 1178
BauI CACGAG 2 cut(s) 128, 350
BbsI GAAGAC 3 cut(s) 49, 612, 634
Bbv12I GWGCWC 2 cut(s) 891, 1178
BbvCI CCTCAGC 2 cut(s) 236, 1149
BbvI GCAGC 7 cut(s) 278, 352, 450, 525, 844, 872, 1260
BccI CCATC 7 cut(s) 17, 554, 575, 716, 791, 872, 1129
BceAI ACGGC 1 cut(s) 722
BciT130I CCWGG 2 cut(s) 485, 505
BciVI GTATCC 1 cut(s) 145
BclI TGATCA 1 cut(s) 930
BcnI CCSGG 1 cut(s) 725
BcoDI GTCTC 5 cut(s) 184, 360, 388, 395, 943
BfaI CTAG 3 cut(s) 149, 1131, 1318
BfmI CTRYAG 3 cut(s) 405, 858, 1155
BfuAI ACCTGC 1 cut(s) 1101
BfuI GTATCC 1 cut(s) 145
BglI GCCNNNNNGGC 2 cut(s) 158, 206
BglII AGATCT 1 cut(s) 816
BisI GCNGC 8 cut(s) 289, 292, 366, 439, 514, 858, 861, 1249
BlsI GCNGC 8 cut(s) 290, 293, 367, 440, 515, 859, 862, 1250
BmcAI AGTACT 2 cut(s) 926, 1000
Bme1390I CCNGG 3 cut(s) 485, 505, 725
Bme18I GGWCC 2 cut(s) 168, 914
BmgT120I GGNCC 3 cut(s) 168, 208, 914
BmiI GGNNCC 6 cut(s) 170, 378, 412, 492, 620, 916
BmrFI CCNGG 3 cut(s) 485, 505, 725
BmsI GCATC 3 cut(s) 187, 331, 408
BoxI GACNNNNGTC 1 cut(s) 144
BpiI GAAGAC 3 cut(s) 49, 612, 634
BplI GAGNNNNNCTC 4 cut(s) 974, 1006, 1046, 1078
Bpu10I CCTNAGC 2 cut(s) 236, 1149
BpuEI CTTGAG 2 cut(s) 142, 505
BpuMI CCSGG 1 cut(s) 725
BsaAI YACGTR 1 cut(s) 424
BsaJI CCNNGG 3 cut(s) 469, 723, 1311
BsaWI WCCGGW 1 cut(s) 615
BsaXI ACNNNNNCTCC 6 cut(s) 56, 86, 245, 275, 704, 734
Bsc4I CCNNNNNNNGG 3 cut(s) 484, 724, 741
Bse118I RCCGGY 2 cut(s) 157, 275
BseBI CCWGG 2 cut(s) 485, 505
BseDI CCNNGG 3 cut(s) 469, 723, 1311
BseGI GGATG 5 cut(s) 567, 1140, 1165, 1246, 1284
BseLI CCNNNNNNNGG 3 cut(s) 484, 724, 741
BseMII CTCAG 9 cut(s) 155, 250, 767, 789, 912, 936, 1077, 1140, 1140
BseRI GAGGAG 5 cut(s) 26, 64, 614, 1070, 1156
BseXI GCAGC 7 cut(s) 278, 352, 450, 525, 844, 872, 1260
BshFI GGCC 4 cut(s) 209, 681, 707, 896
BshNI GGYRCC 2 cut(s) 376, 490
BsiHKAI GWGCWC 2 cut(s) 891, 1178
BsiSI CCGG 5 cut(s) 158, 276, 616, 725, 742
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 3 cut(s) 484, 724, 741
BsmAI GTCTC 5 cut(s) 184, 360, 388, 395, 943
BsmBI CGTCTC 2 cut(s) 184, 388
BsmFI GGGAC 1 cut(s) 154
BsnI GGCC 4 cut(s) 209, 681, 707, 896
Bsp1286I GDGCHC 2 cut(s) 891, 1178
Bsp143I GATC 3 cut(s) 457, 816, 930
Bsp19I CCATGG 1 cut(s) 1311
BspACI CCGC 7 cut(s) 183, 289, 363, 693, 735, 782, 882
BspANI GGCC 4 cut(s) 209, 681, 707, 896
BspCNI CTCAG 9 cut(s) 156, 249, 766, 788, 913, 937, 1076, 1139, 1141
BspLI GGNNCC 6 cut(s) 170, 378, 412, 492, 620, 916
BspMAI CTGCAG 2 cut(s) 409, 862
BspMI ACCTGC 1 cut(s) 1101
BspT107I GGYRCC 2 cut(s) 376, 490
BsrFI RCCGGY 2 cut(s) 157, 275
BssAI RCCGGY 2 cut(s) 157, 275
BssECI CCNNGG 3 cut(s) 469, 723, 1311
BssMI GATC 3 cut(s) 457, 816, 930
BssSI CACGAG 2 cut(s) 128, 350
BssT1I CCWWGG 2 cut(s) 469, 1311
Bst2BI CACGAG 2 cut(s) 128, 350
Bst2UI CCWGG 2 cut(s) 485, 505
Bst4CI ACNGT 4 cut(s) 190, 285, 415, 908
BstBAI YACGTR 1 cut(s) 424
BstC8I GCNNGC 3 cut(s) 159, 277, 593
BstDSI CCRYGG 1 cut(s) 1311
BstF5I GGATG 5 cut(s) 567, 1140, 1165, 1246, 1284
BstKTI GATC 3 cut(s) 460, 819, 933
BstMAI GTCTC 5 cut(s) 184, 360, 388, 395, 943
BstMBI GATC 3 cut(s) 457, 816, 930
BstMWI GCNNNNNNNGC 9 cut(s) 158, 191, 206, 285, 374, 427, 561, 734, 866
BstNI CCWGG 2 cut(s) 485, 505
BstPAI GACNNNNGTC 1 cut(s) 144
BstSCI CCNGG 3 cut(s) 483, 503, 723
BstSFI CTRYAG 3 cut(s) 405, 858, 1155
BstV1I GCAGC 7 cut(s) 278, 352, 450, 525, 844, 872, 1260
BstV2I GAAGAC 3 cut(s) 49, 612, 634
BstX2I RGATCY 1 cut(s) 816
BstYI RGATCY 1 cut(s) 816
BsuI GTATCC 1 cut(s) 145
BsuRI GGCC 4 cut(s) 209, 681, 707, 896
BtgI CCRYGG 1 cut(s) 1311
BtgZI GCGATG 1 cut(s) 850
BtsCI GGATG 5 cut(s) 567, 1140, 1165, 1246, 1284
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 3 cut(s) 117, 290, 783
BveI ACCTGC 1 cut(s) 1101
Cac8I GCNNGC 3 cut(s) 159, 277, 593
CaiI CAGNNNCTG 3 cut(s) 404, 484, 760
Cfr10I RCCGGY 2 cut(s) 157, 275
Cfr13I GGNCC 3 cut(s) 168, 208, 914
CseI GACGC 1 cut(s) 283
CsiI ACCWGGT 1 cut(s) 483
Csp6I GTAC 3 cut(s) 491, 925, 999
CviAII CATG 6 cut(s) 106, 310, 394, 879, 892, 1312
CviQI GTAC 3 cut(s) 491, 925, 999
DpnI GATC 3 cut(s) 459, 818, 932
DpnII GATC 3 cut(s) 457, 816, 930
DraIII CACNNNGTG 1 cut(s) 1216
DrdI GACNNNNNNGTC 1 cut(s) 737
DseDI GACNNNNNNGTC 1 cut(s) 737
EaeI YGGCCR 1 cut(s) 705
EciI GGCGGA 2 cut(s) 172, 724
Ecl136II GAGCTC 2 cut(s) 889, 1176
Eco130I CCWWGG 2 cut(s) 469, 1311
Eco24I GRGCYC 2 cut(s) 891, 1178
Eco47I GGWCC 2 cut(s) 168, 914
Eco53kI GAGCTC 2 cut(s) 889, 1176
EcoICRI GAGCTC 2 cut(s) 889, 1176
EcoO109I RGGNCCY 3 cut(s) 168, 208, 914
EcoRII CCWGG 2 cut(s) 483, 503
EcoT14I CCWWGG 2 cut(s) 469, 1311
EcoT38I GRGCYC 2 cut(s) 891, 1178
ErhI CCWWGG 2 cut(s) 469, 1311
Esp3I CGTCTC 2 cut(s) 184, 388
FaeI CATG 6 cut(s) 109, 313, 397, 882, 895, 1315
FaqI GGGAC 1 cut(s) 154
FatI CATG 6 cut(s) 105, 309, 393, 878, 891, 1311
FbaI TGATCA 1 cut(s) 930
Fnu4HI GCNGC 8 cut(s) 289, 292, 366, 439, 514, 858, 861, 1249
FokI GGATG 5 cut(s) 554, 1147, 1152, 1253, 1291
FriOI GRGCYC 2 cut(s) 891, 1178
Fsp4HI GCNGC 8 cut(s) 289, 292, 366, 439, 514, 858, 861, 1249
FspBI CTAG 3 cut(s) 149, 1131, 1318
GluI GCNGC 8 cut(s) 289, 292, 366, 439, 514, 858, 861, 1249
HaeIII GGCC 4 cut(s) 209, 681, 707, 896
HapII CCGG 5 cut(s) 158, 276, 616, 725, 742
HgaI GACGC 1 cut(s) 283
Hin1II CATG 6 cut(s) 109, 313, 397, 882, 895, 1315
HinfI GANTC 7 cut(s) 474, 671, 731, 848, 951, 1058, 1195
HpaII CCGG 5 cut(s) 158, 276, 616, 725, 742
HphI GGTGA 5 cut(s) 20, 639, 1008, 1102, 1150
Hpy166II GTNNAC 2 cut(s) 790, 1219
Hpy188I TCNGA 5 cut(s) 139, 165, 223, 388, 1051
Hpy188III TCNNGA 5 cut(s) 121, 298, 478, 522, 934
Hpy8I GTNNAC 2 cut(s) 790, 1219
Hpy99I CGWCG 2 cut(s) 194, 299
HpyAV CCTTC 4 cut(s) 104, 295, 441, 662
HpyCH4III ACNGT 4 cut(s) 190, 285, 415, 908
HpyCH4IV ACGT 2 cut(s) 423, 609
HpyCH4V TGCA 8 cut(s) 105, 252, 309, 407, 421, 438, 860, 1248
HpyF10VI GCNNNNNNNGC 9 cut(s) 158, 191, 206, 285, 374, 427, 561, 734, 866
HpySE526I ACGT 2 cut(s) 423, 609
Hsp92II CATG 6 cut(s) 109, 313, 397, 882, 895, 1315
KpnI GGTACC 1 cut(s) 494
KroI GCCGGC 2 cut(s) 157, 275
KroNI GCCGGC 2 cut(s) 159, 277
Ksp22I TGATCA 1 cut(s) 930
Kzo9I GATC 3 cut(s) 457, 816, 930
LmnI GCTCC 4 cut(s) 39, 471, 974, 1297
Lsp1109I GCAGC 7 cut(s) 278, 352, 450, 525, 844, 872, 1260
LweI GCATC 3 cut(s) 187, 331, 408
MabI ACCWGGT 1 cut(s) 483
MaeI CTAG 3 cut(s) 149, 1131, 1318
MaeII ACGT 2 cut(s) 423, 609
MaeIII GTNAC 4 cut(s) 842, 940, 986, 1264
MalI GATC 3 cut(s) 459, 818, 932
MboI GATC 3 cut(s) 457, 816, 930
MfeI CAATTG 1 cut(s) 1203
MflI RGATCY 1 cut(s) 816
MhlI GDGCHC 2 cut(s) 891, 1178
MlsI TGGCCA 1 cut(s) 707
MluCI AATT 3 cut(s) 965, 1012, 1203
MluNI TGGCCA 1 cut(s) 707
MlyI GAGTC 5 cut(s) 665, 725, 857, 945, 1067
MmeI TCCRAC 1 cut(s) 162
Mox20I TGGCCA 1 cut(s) 707
MreI CGCCGGCG 1 cut(s) 275
MroNI GCCGGC 2 cut(s) 157, 275
MscI TGGCCA 1 cut(s) 707
MseI TTAA 2 cut(s) 806, 1283
MslI CAYNNNNRTG 2 cut(s) 110, 1085
Msp20I TGGCCA 1 cut(s) 707
MspA1I CMGCKG 4 cut(s) 291, 365, 695, 840
MspI CCGG 5 cut(s) 158, 276, 616, 725, 742
MspR9I CCNGG 3 cut(s) 485, 505, 725
MunI CAATTG 1 cut(s) 1203
MvaI CCWGG 2 cut(s) 485, 505
MwoI GCNNNNNNNGC 9 cut(s) 158, 191, 206, 285, 374, 427, 561, 734, 866
NaeI GCCGGC 2 cut(s) 159, 277
NciI CCSGG 1 cut(s) 725
NcoI CCATGG 1 cut(s) 1311
NdeII GATC 3 cut(s) 457, 816, 930
NgoMIV GCCGGC 2 cut(s) 157, 275
NlaIII CATG 6 cut(s) 109, 313, 397, 882, 895, 1315
NlaIV GGNNCC 6 cut(s) 170, 378, 412, 492, 620, 916
NmeAIII GCCGAG 1 cut(s) 657
NmuCI GTSAC 3 cut(s) 842, 940, 1264
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PdiI GCCGGC 2 cut(s) 159, 277
PfeI GAWTC 2 cut(s) 474, 1195
PflFI GACNNNGTC 1 cut(s) 611
PflMI CCANNNNNTGG 1 cut(s) 484
PkrI GCNGC 8 cut(s) 290, 293, 367, 440, 515, 859, 862, 1250
PleI GAGTC 5 cut(s) 665, 725, 856, 945, 1066
PpsI GAGTC 5 cut(s) 665, 725, 856, 945, 1066
Ppu21I YACGTR 1 cut(s) 424
PpuMI RGGWCCY 2 cut(s) 168, 914
PshAI GACNNNNGTC 1 cut(s) 144
Psp124BI GAGCTC 2 cut(s) 891, 1178
Psp5II RGGWCCY 2 cut(s) 168, 914
Psp6I CCWGG 2 cut(s) 483, 503
PspGI CCWGG 2 cut(s) 483, 503
PspN4I GGNNCC 6 cut(s) 170, 378, 412, 492, 620, 916
PspPI GGNCC 3 cut(s) 168, 208, 914
PspPPI RGGWCCY 2 cut(s) 168, 914
PsrI GAACNNNNNNTAC 2 cut(s) 991, 1023
PstI CTGCAG 2 cut(s) 409, 862
PstNI CAGNNNCTG 3 cut(s) 404, 484, 760
PsuI RGATCY 1 cut(s) 816
PsyI GACNNNGTC 1 cut(s) 611
PvuII CAGCTG 1 cut(s) 840
RsaI GTAC 3 cut(s) 492, 926, 1000
RsaNI GTAC 3 cut(s) 491, 925, 999
RseI CAYNNNNRTG 2 cut(s) 110, 1085
SacI GAGCTC 2 cut(s) 891, 1178
SaqAI TTAA 2 cut(s) 806, 1283
SatI GCNGC 8 cut(s) 289, 292, 366, 439, 514, 858, 861, 1249
Sau3AI GATC 3 cut(s) 457, 816, 930
Sau96I GGNCC 3 cut(s) 168, 208, 914
ScaI AGTACT 2 cut(s) 926, 1000
SchI GAGTC 5 cut(s) 665, 725, 857, 945, 1067
ScrFI CCNGG 3 cut(s) 485, 505, 725
SduI GDGCHC 2 cut(s) 891, 1178
SexAI ACCWGGT 1 cut(s) 483
SfaNI GCATC 3 cut(s) 187, 331, 408
SfcI CTRYAG 3 cut(s) 405, 858, 1155
SgrAI CRCCGGYG 1 cut(s) 275
SinI GGWCC 2 cut(s) 168, 914
SmiMI CAYNNNNRTG 2 cut(s) 110, 1085
SmlI CTYRAG 2 cut(s) 121, 520
SmoI CTYRAG 2 cut(s) 121, 520
Sse9I AATT 3 cut(s) 965, 1012, 1203
SsiI CCGC 7 cut(s) 183, 289, 363, 693, 735, 782, 882
SspMI CTAG 3 cut(s) 149, 1131, 1318
SstI GAGCTC 2 cut(s) 891, 1178
StyD4I CCNGG 3 cut(s) 483, 503, 723
StyI CCWWGG 2 cut(s) 469, 1311
TaaI ACNGT 4 cut(s) 190, 285, 415, 908
TaiI ACGT 2 cut(s) 426, 612
TaqI TCGA 2 cut(s) 315, 669
TasI AATT 3 cut(s) 965, 1012, 1203
TatI WGTACW 2 cut(s) 924, 998
TauI GCSGC 1 cut(s) 291
TfiI GAWTC 2 cut(s) 474, 1195
Tru1I TTAA 2 cut(s) 806, 1283
Tru9I TTAA 2 cut(s) 806, 1283
TscAI CASTG 3 cut(s) 117, 290, 783
TseFI GTSAC 3 cut(s) 842, 940, 1264
TseI GCWGC 7 cut(s) 291, 365, 438, 513, 857, 860, 1248
Tsp45I GTSAC 3 cut(s) 842, 940, 1264
TspDTI ATGAA 1 cut(s) 1032
TspGWI ACGGA 3 cut(s) 87, 166, 591
TspRI CASTG 3 cut(s) 117, 290, 783
Tth111I GACNNNGTC 1 cut(s) 611
Van91I CCANNNNNTGG 1 cut(s) 484
VpaK11BI GGWCC 2 cut(s) 168, 914
XcmI CCANNNNNNNNNTGG 1 cut(s) 1177
XspI CTAG 3 cut(s) 149, 1131, 1318
ZrmI AGTACT 2 cut(s) 926, 1000
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.