Rh5BG239000

CBS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003827
Physical Location & Seq
Reverse (-)
28586534 .. 28589927
3394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG239000.1

Sequence Viewer

Length: 1215 bp
ATGGCAGTGAGCTTTTCAAGGCACGAGGTATCTGACCTCTGTCTGGGCAAGCCGGCTCTGAGGTCTCTCTCCATCTCGGCCACCGTTGCCGATGCCGTTGAGGCCTTGAGGATCTCGGAAGACAACTTCATCAGCGTCTGGGATTGCAACCATCACTCCAAGAGTCTCGCCGGAGACCAGTGCCGGTGTGTTGGGAAGTTGTGCATGGTTGATGTGATTTGCTATCTTTCCAAAGACGACAACTTGTCGTCTCCATCTGCTGCGCTGAAGGCACCGGTGTCTGAAATCTTGACAAAGATTCCGGGAACTGTTATGCACGTCGACCCATCTTGCAGCTTATTGCAAGCCATTGATCTAATTCTCCAAGGAAACCAGAACCTGGTGGTACCAATTCAGAACAGGCTAAGCGGCACTTCAAGAGGAAAACAGTTCCCAAAATCCACAAACTACATGACCACCACAACCAATCACAACGGTCAAGAATTTTGCTGGCTAACACAAGAAGTCGTAATCCGATTCCTTCTCAGCTCAATTGGGGTCTTCTCTCCCATGCCTGCTCTCTCTATCGACTCTCTTGGGATCATCAACACCACAGACATCTTGGCCATCAACTACCACTCTCCGGCGAGCTCGGCGGTCCAGCTCATATCTCAGTCACTGGAGCAGCAAACCTCGGTGGCTGTTGTGGACATTGATGATGTGTTGATCGGTGAGATCTCGCCTTTCACTCTGGCCTGCTGTGACGAGTCGGTGGCTGCAGCCATCGCCACTCTGTCTTGCGGAGAGCTCATGGCCTACATTGACTGTGGAGGACCACCTGAGCACTTGATCAAGATTGTGACAGAGAGAATGAAGGAGAGGAAGTTACAAGGAGCTTTGGAAAATTACTCATCAGCAGCTAATGCTTCTGCAAACTTAGTGTCGTTGTCTTCTTCTTCTTCATCAGATGAGGAGTCCTCTGGATCTCTAAATAGTACCAAACTCAGGTCTGCGGGAAGATTTAGTAGGTCAAATAGCTACTCGGCTAGAATGGTGAGGAGGTCTGAGGCCATAGTTTGTCATCCAAAGAGTTCGTTGGTGGCCGTGATGATTCAGGCAATTGCTCATAGAGTGAACTATGTCTGGGTTATTGAGGATGACTATAACTTGGTGGGTATTGTCACTTTTTCTGGCATGTTAGAGGTTTTCGGGGAACACTTGGAGACCATGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS

Protein Analysis

404

Amino Acids

43.56

Weight (kDa)

5.29

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 385
AccB1I GGYRCC 2 cut(s) 271, 385
AccB7I CCANNNNNTGG 1 cut(s) 379
AccI GTMKAC 1 cut(s) 321
AciI CCGC 4 cut(s) 408, 635, 780, 992
AclWI GGATC 3 cut(s) 119, 587, 970
AcoI YGGCCR 3 cut(s) 78, 603, 1080
AcsI RAATTY 1 cut(s) 482
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 2 cut(s) 387, 976
AfiI CCNNNNNNNGG 4 cut(s) 43, 379, 622, 984
AgeI ACCGGT 1 cut(s) 274
AgsI TTSAA 2 cut(s) 18, 417
AhdI GACNNNNNGTC 1 cut(s) 244
AjiI CACGTC 1 cut(s) 319
AjnI CCWGG 1 cut(s) 378
AluBI AGCT 9 cut(s) 12, 336, 528, 630, 643, 787, 875, 899, 1017
AluI AGCT 9 cut(s) 12, 336, 528, 630, 643, 787, 875, 899, 1017
Alw21I GWGCWC 3 cut(s) 632, 789, 825
Alw26I GTCTC 5 cut(s) 69, 168, 170, 255, 1196
AlwI GGATC 3 cut(s) 119, 587, 970
AlwNI CAGNNNCTG 3 cut(s) 138, 379, 658
AoxI GGCC 7 cut(s) 78, 102, 603, 732, 792, 1047, 1080
ApeKI GCWGC 6 cut(s) 260, 333, 664, 755, 758, 896
ApoI RAATTY 1 cut(s) 482
ArsI GACNNNNNNTTYG 2 cut(s) 905, 937
AsiGI ACCGGT 1 cut(s) 274
Asp718I GGTACC 1 cut(s) 385
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 2 cut(s) 637, 812
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 2 cut(s) 722, 1045
AvaII GGWCC 2 cut(s) 637, 812
BalI TGGCCA 1 cut(s) 605
BanI GGYRCC 2 cut(s) 271, 385
BanII GRGCYC 2 cut(s) 632, 789
BauI CACGAG 1 cut(s) 23
BbsI GAAGAC 3 cut(s) 126, 532, 921
Bbv12I GWGCWC 3 cut(s) 632, 789, 825
BbvI GCAGC 6 cut(s) 247, 345, 676, 742, 770, 908
BccI CCATC 6 cut(s) 80, 159, 262, 334, 614, 770
BceAI ACGGC 2 cut(s) 80, 1067
BciT130I CCWGG 1 cut(s) 380
BclI TGATCA 1 cut(s) 828
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 5 cut(s) 69, 168, 170, 255, 1196
BfaI CTAG 2 cut(s) 1026, 1213
BfmI CTRYAG 1 cut(s) 756
BglI GCCNNNNNGGC 1 cut(s) 101
BglII AGATCT 1 cut(s) 714
BisI GCNGC 7 cut(s) 261, 334, 409, 665, 756, 759, 897
BlpI GCTNAGC 1 cut(s) 404
BlsI GCNGC 7 cut(s) 262, 335, 410, 666, 757, 760, 898
Bme1390I CCNGG 2 cut(s) 303, 380
Bme18I GGWCC 2 cut(s) 637, 812
BmeRI GACNNNNNGTC 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 2 cut(s) 637, 812
BmiI GGNNCC 2 cut(s) 273, 387
BmrFI CCNGG 2 cut(s) 303, 380
BmsI GCATC 1 cut(s) 82
BoxI GACNNNNGTC 1 cut(s) 39
BpiI GAAGAC 3 cut(s) 126, 532, 921
BplI GAGNNNNNCTC 2 cut(s) 941, 973
BpmI CTGGAG 1 cut(s) 680
Bpu10I CCTNAGC 1 cut(s) 819
Bpu1102I GCTNAGC 1 cut(s) 404
BpuEI CTTGAG 1 cut(s) 127
BpuMI CCSGG 1 cut(s) 303
BsaI GGTCTC 3 cut(s) 69, 168, 1196
BsaJI CCNNGG 2 cut(s) 364, 672
BsaWI WCCGGW 1 cut(s) 274
BsaXI ACNNNNNCTCC 4 cut(s) 140, 170, 848, 878
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 379, 622, 984
Bse118I RCCGGY 3 cut(s) 52, 183, 274
Bse1I ACTGG 2 cut(s) 178, 663
BseBI CCWGG 1 cut(s) 380
BseDI CCNNGG 2 cut(s) 364, 672
BseGI GGATG 2 cut(s) 1060, 1141
BseLI CCNNNNNNNGG 4 cut(s) 43, 379, 622, 984
BseMII CTCAG 6 cut(s) 50, 538, 665, 810, 997, 1035
BseNI ACTGG 2 cut(s) 178, 663
BseRI GAGGAG 2 cut(s) 965, 1051
BseXI GCAGC 6 cut(s) 247, 345, 676, 742, 770, 908
BshFI GGCC 7 cut(s) 80, 104, 605, 734, 794, 1049, 1082
BshNI GGYRCC 2 cut(s) 271, 385
BshTI ACCGGT 1 cut(s) 274
BsiHKAI GWGCWC 3 cut(s) 632, 789, 825
BsiSI CCGG 6 cut(s) 53, 171, 184, 275, 302, 623
BslI CCNNNNNNNGG 4 cut(s) 43, 379, 622, 984
BsmAI GTCTC 5 cut(s) 69, 168, 170, 255, 1196
BsmBI CGTCTC 1 cut(s) 255
BsnI GGCC 7 cut(s) 80, 104, 605, 734, 794, 1049, 1082
Bso31I GGTCTC 3 cut(s) 69, 168, 1196
Bsp1286I GDGCHC 3 cut(s) 632, 789, 825
Bsp143I GATC 8 cut(s) 111, 352, 579, 705, 714, 828, 962, 1209
Bsp1720I GCTNAGC 1 cut(s) 404
BspACI CCGC 4 cut(s) 408, 635, 780, 992
BspANI GGCC 7 cut(s) 80, 104, 605, 734, 794, 1049, 1082
BspCNI CTCAG 6 cut(s) 51, 537, 664, 811, 996, 1036
BspLI GGNNCC 2 cut(s) 273, 387
BspMAI CTGCAG 1 cut(s) 760
BspPI GGATC 3 cut(s) 119, 587, 970
BspT107I GGYRCC 2 cut(s) 271, 385
BspTNI GGTCTC 3 cut(s) 69, 168, 1196
BsrFI RCCGGY 3 cut(s) 52, 183, 274
BsrI ACTGG 2 cut(s) 178, 663
BssAI RCCGGY 3 cut(s) 52, 183, 274
BssECI CCNNGG 2 cut(s) 364, 672
BssMI GATC 8 cut(s) 111, 352, 579, 705, 714, 828, 962, 1209
BssSI CACGAG 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 364
Bst2BI CACGAG 1 cut(s) 23
Bst2UI CCWGG 1 cut(s) 380
Bst4CI ACNGT 5 cut(s) 85, 310, 429, 476, 806
BstAPI GCANNNNNTGC 1 cut(s) 902
BstC8I GCNNGC 7 cut(s) 50, 54, 345, 491, 555, 628, 736
BstDEI CTNAG 8 cut(s) 59, 404, 524, 651, 819, 916, 983, 1044
BstF5I GGATG 2 cut(s) 1060, 1141
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 8 cut(s) 114, 355, 582, 708, 717, 831, 965, 1212
BstMAI GTCTC 5 cut(s) 69, 168, 170, 255, 1196
BstMBI GATC 8 cut(s) 111, 352, 579, 705, 714, 828, 962, 1209
BstMWI GCNNNNNNNGC 6 cut(s) 86, 101, 269, 632, 764, 902
BstNI CCWGG 1 cut(s) 380
BstNSI RCATGY 1 cut(s) 1177
BstPAI GACNNNNGTC 1 cut(s) 39
BstSCI CCNGG 2 cut(s) 301, 378
BstSFI CTRYAG 1 cut(s) 756
BstV1I GCAGC 6 cut(s) 247, 345, 676, 742, 770, 908
BstV2I GAAGAC 3 cut(s) 126, 532, 921
BstX2I RGATCY 3 cut(s) 111, 714, 962
BstYI RGATCY 3 cut(s) 111, 714, 962
BsuRI GGCC 7 cut(s) 80, 104, 605, 734, 794, 1049, 1082
BtgZI GCGATG 1 cut(s) 748
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 2 cut(s) 1060, 1141
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 185, 656
Cac8I GCNNGC 7 cut(s) 50, 54, 345, 491, 555, 628, 736
CaiI CAGNNNCTG 3 cut(s) 138, 379, 658
CfoI GCGC 1 cut(s) 265
Cfr10I RCCGGY 3 cut(s) 52, 183, 274
Cfr13I GGNCC 2 cut(s) 637, 812
CseI GACGC 1 cut(s) 124
CsiI ACCWGGT 1 cut(s) 378
Csp6I GTAC 2 cut(s) 386, 975
CspAI ACCGGT 1 cut(s) 274
CviAII CATG 6 cut(s) 205, 451, 550, 790, 1174, 1207
CviQI GTAC 2 cut(s) 386, 975
DdeI CTNAG 8 cut(s) 59, 404, 524, 651, 819, 916, 983, 1044
DpnI GATC 8 cut(s) 113, 354, 581, 707, 716, 830, 964, 1211
DpnII GATC 8 cut(s) 111, 352, 579, 705, 714, 828, 962, 1209
DriI GACNNNNNGTC 1 cut(s) 244
EaeI YGGCCR 3 cut(s) 78, 603, 1080
Eam1105I GACNNNNNGTC 1 cut(s) 244
Ecl136II GAGCTC 2 cut(s) 630, 787
Eco130I CCWWGG 1 cut(s) 364
Eco147I AGGCCT 1 cut(s) 104
Eco24I GRGCYC 2 cut(s) 632, 789
Eco31I GGTCTC 3 cut(s) 69, 168, 1196
Eco47I GGWCC 2 cut(s) 637, 812
Eco53kI GAGCTC 2 cut(s) 630, 787
Eco57I CTGAAG 1 cut(s) 287
EcoICRI GAGCTC 2 cut(s) 630, 787
EcoRII CCWGG 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 364
EcoT38I GRGCYC 2 cut(s) 632, 789
ErhI CCWWGG 1 cut(s) 364
Esp3I CGTCTC 1 cut(s) 255
FaeI CATG 6 cut(s) 208, 454, 553, 793, 1177, 1210
FalI AAGNNNNNCTT 2 cut(s) 397, 429
FatI CATG 6 cut(s) 204, 450, 549, 789, 1173, 1206
FauI CCCGC 1 cut(s) 985
FbaI TGATCA 1 cut(s) 828
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 7 cut(s) 261, 334, 409, 665, 756, 759, 897
FokI GGATG 2 cut(s) 1047, 1148
FriOI GRGCYC 2 cut(s) 632, 789
Fsp4HI GCNGC 7 cut(s) 261, 334, 409, 665, 756, 759, 897
FspBI CTAG 2 cut(s) 1026, 1213
GlaI GCGC 1 cut(s) 264
GluI GCNGC 7 cut(s) 261, 334, 409, 665, 756, 759, 897
GsuI CTGGAG 1 cut(s) 680
HaeIII GGCC 7 cut(s) 80, 104, 605, 734, 794, 1049, 1082
HapII CCGG 6 cut(s) 53, 171, 184, 275, 302, 623
HgaI GACGC 1 cut(s) 124
HhaI GCGC 1 cut(s) 265
Hin1II CATG 6 cut(s) 208, 454, 553, 793, 1177, 1210
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 7 cut(s) 163, 298, 516, 569, 746, 953, 1090
HpaII CCGG 6 cut(s) 53, 171, 184, 275, 302, 623
HphI GGTGA 2 cut(s) 722, 1045
Hpy166II GTNNAC 3 cut(s) 322, 688, 1114
Hpy188I TCNGA 8 cut(s) 34, 60, 118, 283, 396, 515, 946, 1045
Hpy188III TCNNGA 5 cut(s) 289, 417, 479, 832, 960
Hpy8I GTNNAC 3 cut(s) 322, 688, 1114
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 3 cut(s) 262, 530, 847
HpyCH4III ACNGT 5 cut(s) 85, 310, 429, 476, 806
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 7 cut(s) 147, 204, 316, 333, 343, 758, 911
HpyF10VI GCNNNNNNNGC 6 cut(s) 86, 101, 269, 632, 764, 902
HpyF3I CTNAG 8 cut(s) 59, 404, 524, 651, 819, 916, 983, 1044
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 6 cut(s) 208, 454, 553, 793, 1177, 1210
HspAI GCGC 1 cut(s) 263
KpnI GGTACC 1 cut(s) 389
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Ksp22I TGATCA 1 cut(s) 828
Kzo9I GATC 8 cut(s) 111, 352, 579, 705, 714, 828, 962, 1209
LmnI GCTCC 2 cut(s) 661, 872
Lsp1109I GCAGC 6 cut(s) 247, 345, 676, 742, 770, 908
LweI GCATC 1 cut(s) 82
MabI ACCWGGT 1 cut(s) 378
MaeI CTAG 2 cut(s) 1026, 1213
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 5 cut(s) 654, 740, 838, 864, 1159
MalI GATC 8 cut(s) 113, 354, 581, 707, 716, 830, 964, 1211
MboI GATC 8 cut(s) 111, 352, 579, 705, 714, 828, 962, 1209
MboII GAAGA 7 cut(s) 131, 532, 921, 924, 927, 930, 1008
MfeI CAATTG 2 cut(s) 531, 1098
MflI RGATCY 3 cut(s) 111, 714, 962
MhlI GDGCHC 3 cut(s) 632, 789, 825
MlsI TGGCCA 1 cut(s) 605
MluCI AATT 6 cut(s) 357, 390, 482, 531, 883, 1098
MluNI TGGCCA 1 cut(s) 605
MlyI GAGTC 4 cut(s) 172, 563, 755, 962
Mox20I TGGCCA 1 cut(s) 605
MroNI GCCGGC 1 cut(s) 52
MscI TGGCCA 1 cut(s) 605
Msp20I TGGCCA 1 cut(s) 605
MspI CCGG 6 cut(s) 53, 171, 184, 275, 302, 623
MspR9I CCNGG 2 cut(s) 303, 380
MunI CAATTG 2 cut(s) 531, 1098
MvaI CCWGG 1 cut(s) 380
MwoI GCNNNNNNNGC 6 cut(s) 86, 101, 269, 632, 764, 902
NaeI GCCGGC 1 cut(s) 54
NciI CCSGG 1 cut(s) 303
NdeII GATC 8 cut(s) 111, 352, 579, 705, 714, 828, 962, 1209
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 6 cut(s) 208, 454, 553, 793, 1177, 1210
NlaIV GGNNCC 2 cut(s) 273, 387
NmeAIII GCCGAG 3 cut(s) 56, 611, 1001
NmuCI GTSAC 4 cut(s) 654, 740, 838, 1159
NspI RCATGY 1 cut(s) 1177
PceI AGGCCT 1 cut(s) 104
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 3 cut(s) 298, 516, 1090
PflMI CCANNNNNTGG 1 cut(s) 379
PfoI TCCNGGA 1 cut(s) 301
PinAI ACCGGT 1 cut(s) 274
PkrI GCNGC 7 cut(s) 262, 335, 410, 666, 757, 760, 898
PleI GAGTC 4 cut(s) 171, 563, 754, 961
PpsI GAGTC 4 cut(s) 171, 563, 754, 961
PshAI GACNNNNGTC 1 cut(s) 39
Psp124BI GAGCTC 2 cut(s) 632, 789
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 2 cut(s) 273, 387
PspPI GGNCC 2 cut(s) 637, 812
PstI CTGCAG 1 cut(s) 760
PstNI CAGNNNCTG 3 cut(s) 138, 379, 658
PsuI RGATCY 3 cut(s) 111, 714, 962
RsaI GTAC 2 cut(s) 387, 976
RsaNI GTAC 2 cut(s) 386, 975
SacI GAGCTC 2 cut(s) 632, 789
SalI GTCGAC 1 cut(s) 320
SatI GCNGC 7 cut(s) 261, 334, 409, 665, 756, 759, 897
Sau3AI GATC 8 cut(s) 111, 352, 579, 705, 714, 828, 962, 1209
Sau96I GGNCC 2 cut(s) 637, 812
SchI GAGTC 4 cut(s) 172, 563, 755, 962
ScrFI CCNGG 2 cut(s) 303, 380
SduI GDGCHC 3 cut(s) 632, 789, 825
SexAI ACCWGGT 1 cut(s) 378
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 756
SgrAI CRCCGGYG 1 cut(s) 274
SinI GGWCC 2 cut(s) 637, 812
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 6 cut(s) 357, 390, 482, 531, 883, 1098
SseBI AGGCCT 1 cut(s) 104
SsiI CCGC 4 cut(s) 408, 635, 780, 992
SspMI CTAG 2 cut(s) 1026, 1213
SstI GAGCTC 2 cut(s) 632, 789
StuI AGGCCT 1 cut(s) 104
StyD4I CCNGG 2 cut(s) 301, 378
StyI CCWWGG 1 cut(s) 364
TaaI ACNGT 5 cut(s) 85, 310, 429, 476, 806
TaiI ACGT 1 cut(s) 321
TaqI TCGA 2 cut(s) 321, 567
TasI AATT 6 cut(s) 357, 390, 482, 531, 883, 1098
TauI GCSGC 1 cut(s) 411
TfiI GAWTC 3 cut(s) 298, 516, 1090
TscAI CASTG 3 cut(s) 12, 185, 663
TseFI GTSAC 4 cut(s) 654, 740, 838, 1159
TseI GCWGC 6 cut(s) 260, 333, 664, 755, 758, 896
Tsp45I GTSAC 4 cut(s) 654, 740, 838, 1159
TspDTI ATGAA 3 cut(s) 118, 866, 930
TspRI CASTG 3 cut(s) 12, 185, 663
Van91I CCANNNNNTGG 1 cut(s) 379
VpaK11BI GGWCC 2 cut(s) 637, 812
XapI RAATTY 1 cut(s) 482
XceI RCATGY 1 cut(s) 1177
XcmI CCANNNNNNNNNTGG 1 cut(s) 598
XmiI GTMKAC 1 cut(s) 321
XspI CTAG 2 cut(s) 1026, 1213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.