RchiOBHm_Chr6g0280011

CBS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003827
Physical Location & Seq
Reverse (-)
43248117 .. 43250026
1910 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25110

Sequence Viewer

Length: 1212 bp
ATGGCAGTGAGCTTCTTGAGGCACGAGATATCCGACCTCTGTCTAGCCAAGCCGGCTCTGAGGTCCCTCTCCGTCTCCGCCACCGTCGCCGATGCCTTAGAGGTCCTCAAAACCTCCGAAGAAAACTTCCTCAGCATTTGGGATTGCAACCACCACTCCAAAACCCTCGCCGGTGATCAGTGCCGCTGCGTCGGGAAGGTCTGCATGGTCGATGTGATTTGCTACCTTTCCCAAGATGCCAACCTCGTGTCTCCCTCCGCTGCTCTCAAGGCACCCGTCTCTGAAATCATGACAGAGACTGCAGGAACCGTGATGCACGTAGAGCCTTCTTGCAGCTTACTAAAAGCCATTGATCTAATGCTCCAAGGAATCCAGAACCTGGTGGTACCAATCCAAACCAGGCTAAGCAGCAACTCAAGAAGAAAGCAACACCCAAAACTCATCAACAGCACCACAAGCACCATCCACAGCGGACAAGAGTTCTGCCTGTGTGAGCAGGAAGACGTAGTCCGGTTCCTCCTCAACTCTATTGGGGTCTTCTCACCCCTTCCTGCTGTCTCAATCGACTCACTCGGCCTCATCAACACCGCTGACATCTTGGCCATCAACTACCACTCCCCGGTTGACTCCGCCGTCCAGCTCATAACTCAGTCGCTGACACAAAAAACCTCAGTGGCGGTTGTGGACATTGATGGTGTGTTAATCGGCGAGATCTCGCCTTTTACTCTTTCTAGCTGTGATGAGTCGGTGGCTGCAGCCATCGCCACTCTGTCATGCGGAGAGCTCATGGCCTACATTGACTGTGGAGGACCCCCTGAGTACTTGATCAAGATTGTGACTGAGAGACTCAAACAGAGAAAGTTACAAGGAGCTTTGGAGAGTTACTCATCAAGTACTTCAAGTTCCAATTCACCAATGTTTTCTTCTTCTTCTTCTTCATCAGATGAGGAGTCCTCAGTATATCCAAGTAGCACCAGAATGGTGAGGTCTGGGAGGTTCAGCAGGTCTAATAGCTACTCAGCTAGGATGGTGAGGAGGGCTGAGGCTATAGTGTGTCATCCCAAGAGCTCATTGGTGGCTGTGATGATTCAGGCAATTGCTCACAGAGTGAACTATGTTTGGGTTATTGAGGATGATTGCAGCCTTGTGGGGATTGTCACTTTTTCTGGGATGTTAAAGGTTTTCAGGGAGCATTTGGAAACCATGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS

Protein Analysis

403

Amino Acids

43.63

Weight (kDa)

5.71

Isoelectric Point (pI)

53.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 632
Acc36I ACCTGC 1 cut(s) 993
Acc65I GGTACC 1 cut(s) 385
AccB1I GGYRCC 2 cut(s) 271, 385
AccB7I CCANNNNNTGG 1 cut(s) 379
AciI CCGC 8 cut(s) 78, 184, 258, 471, 588, 630, 677, 777
AcoI YGGCCR 1 cut(s) 600
AdeI CACNNNGTG 1 cut(s) 1108
AfaI GTAC 3 cut(s) 387, 821, 895
AfiI CCNNNNNNNGG 2 cut(s) 379, 619
AgsI TTSAA 1 cut(s) 900
AjnI CCWGG 2 cut(s) 378, 398
AjuI GAANNNNNNNTTGG 2 cut(s) 907, 939
AluBI AGCT 9 cut(s) 12, 336, 640, 735, 784, 872, 1014, 1022, 1068
AluI AGCT 9 cut(s) 12, 336, 640, 735, 784, 872, 1014, 1022, 1068
Alw21I GWGCWC 2 cut(s) 786, 1070
Alw26I GTCTC 6 cut(s) 79, 255, 283, 290, 562, 838
AlwNI CAGNNNCTG 3 cut(s) 299, 379, 655
AoxI GGCC 3 cut(s) 574, 600, 789
ApeKI GCWGC 7 cut(s) 186, 260, 333, 408, 752, 755, 1140
Asp718I GGTACC 1 cut(s) 385
AspS9I GGNCC 3 cut(s) 63, 103, 809
AsuC2I CCSGG 1 cut(s) 620
AsuHPI GGTGA 5 cut(s) 185, 534, 903, 994, 1042
AvaII GGWCC 3 cut(s) 63, 103, 809
BalI TGGCCA 1 cut(s) 602
BanI GGYRCC 2 cut(s) 271, 385
BanII GRGCYC 2 cut(s) 786, 1070
BauI CACGAG 2 cut(s) 23, 245
BbsI GAAGAC 2 cut(s) 507, 529
Bbv12I GWGCWC 2 cut(s) 786, 1070
BbvCI CCTCAGC 2 cut(s) 131, 1041
BbvI GCAGC 7 cut(s) 173, 247, 345, 420, 739, 767, 1152
BccI CCATC 5 cut(s) 470, 611, 686, 767, 1021
BceAI ACGGC 1 cut(s) 617
BciT130I CCWGG 2 cut(s) 380, 400
BclI TGATCA 2 cut(s) 175, 825
BcnI CCSGG 1 cut(s) 620
BcoDI GTCTC 6 cut(s) 79, 255, 283, 290, 562, 838
BfaI CTAG 4 cut(s) 44, 732, 1023, 1210
BfmI CTRYAG 3 cut(s) 300, 753, 1047
BfuAI ACCTGC 1 cut(s) 993
BglI GCCNNNNNGGC 1 cut(s) 53
BglII AGATCT 1 cut(s) 711
BisI GCNGC 8 cut(s) 184, 187, 261, 334, 409, 753, 756, 1141
BlpI GCTNAGC 1 cut(s) 404
BlsI GCNGC 8 cut(s) 185, 188, 262, 335, 410, 754, 757, 1142
BmcAI AGTACT 2 cut(s) 821, 895
Bme1390I CCNGG 3 cut(s) 380, 400, 620
Bme18I GGWCC 3 cut(s) 63, 103, 809
BmgT120I GGNCC 3 cut(s) 63, 103, 809
BmiI GGNNCC 6 cut(s) 65, 273, 307, 387, 515, 811
BmrFI CCNGG 3 cut(s) 380, 400, 620
BmsI GCATC 3 cut(s) 82, 226, 303
BoxI GACNNNNGTC 1 cut(s) 39
BpiI GAAGAC 2 cut(s) 507, 529
BplI GAGNNNNNCTC 4 cut(s) 869, 901, 938, 970
Bpu10I CCTNAGC 2 cut(s) 131, 1041
Bpu1102I GCTNAGC 1 cut(s) 404
BpuEI CTTGAG 3 cut(s) 37, 251, 400
BpuMI CCSGG 1 cut(s) 620
BsaAI YACGTR 1 cut(s) 319
BsaJI CCNNGG 2 cut(s) 364, 618
BsaWI WCCGGW 1 cut(s) 510
BsaXI ACNNNNNCTCC 4 cut(s) 140, 170, 599, 629
Bsc4I CCNNNNNNNGG 2 cut(s) 379, 619
Bse118I RCCGGY 2 cut(s) 52, 170
BseBI CCWGG 2 cut(s) 380, 400
BseDI CCNNGG 2 cut(s) 364, 618
BseGI GGATG 5 cut(s) 462, 1032, 1057, 1138, 1176
BseLI CCNNNNNNNGG 2 cut(s) 379, 619
BseMII CTCAG 9 cut(s) 50, 145, 662, 684, 807, 831, 969, 1032, 1032
BseRI GAGGAG 3 cut(s) 509, 962, 1048
BseXI GCAGC 7 cut(s) 173, 247, 345, 420, 739, 767, 1152
BshFI GGCC 3 cut(s) 576, 602, 791
BshNI GGYRCC 2 cut(s) 271, 385
BsiHKAI GWGCWC 2 cut(s) 786, 1070
BsiSI CCGG 4 cut(s) 53, 171, 511, 620
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 2 cut(s) 379, 619
BsmAI GTCTC 6 cut(s) 79, 255, 283, 290, 562, 838
BsmBI CGTCTC 2 cut(s) 79, 283
BsmFI GGGAC 1 cut(s) 49
BsnI GGCC 3 cut(s) 576, 602, 791
Bsp1286I GDGCHC 2 cut(s) 786, 1070
Bsp143I GATC 4 cut(s) 175, 352, 711, 825
Bsp1720I GCTNAGC 1 cut(s) 404
BspACI CCGC 8 cut(s) 78, 184, 258, 471, 588, 630, 677, 777
BspANI GGCC 3 cut(s) 576, 602, 791
BspCNI CTCAG 9 cut(s) 51, 144, 661, 683, 808, 832, 968, 1031, 1033
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 6 cut(s) 65, 273, 307, 387, 515, 811
BspMAI CTGCAG 2 cut(s) 304, 757
BspMI ACCTGC 1 cut(s) 993
BspT107I GGYRCC 2 cut(s) 271, 385
BsrFI RCCGGY 2 cut(s) 52, 170
BssAI RCCGGY 2 cut(s) 52, 170
BssECI CCNNGG 2 cut(s) 364, 618
BssMI GATC 4 cut(s) 175, 352, 711, 825
BssSI CACGAG 2 cut(s) 23, 245
BssT1I CCWWGG 1 cut(s) 364
Bst2BI CACGAG 2 cut(s) 23, 245
Bst2UI CCWGG 2 cut(s) 380, 400
Bst4CI ACNGT 3 cut(s) 85, 310, 803
BstBAI YACGTR 1 cut(s) 319
BstC8I GCNNGC 1 cut(s) 54
BstF5I GGATG 5 cut(s) 462, 1032, 1057, 1138, 1176
BstKTI GATC 4 cut(s) 178, 355, 714, 828
BstMAI GTCTC 6 cut(s) 79, 255, 283, 290, 562, 838
BstMBI GATC 4 cut(s) 175, 352, 711, 825
BstMWI GCNNNNNNNGC 6 cut(s) 53, 86, 269, 322, 456, 761
BstNI CCWGG 2 cut(s) 380, 400
BstPAI GACNNNNGTC 1 cut(s) 39
BstSCI CCNGG 3 cut(s) 378, 398, 618
BstSFI CTRYAG 3 cut(s) 300, 753, 1047
BstV1I GCAGC 7 cut(s) 173, 247, 345, 420, 739, 767, 1152
BstV2I GAAGAC 2 cut(s) 507, 529
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
BsuRI GGCC 3 cut(s) 576, 602, 791
BtgZI GCGATG 1 cut(s) 745
BtsCI GGATG 5 cut(s) 462, 1032, 1057, 1138, 1176
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 185, 678
BveI ACCTGC 1 cut(s) 993
Cac8I GCNNGC 1 cut(s) 54
CaiI CAGNNNCTG 3 cut(s) 299, 379, 655
CciI TCATGA 1 cut(s) 288
Cfr10I RCCGGY 2 cut(s) 52, 170
Cfr13I GGNCC 3 cut(s) 63, 103, 809
CseI GACGC 1 cut(s) 178
CsiI ACCWGGT 1 cut(s) 378
Csp6I GTAC 3 cut(s) 386, 820, 894
CviAII CATG 5 cut(s) 205, 289, 774, 787, 1204
CviQI GTAC 3 cut(s) 386, 820, 894
DpnI GATC 4 cut(s) 177, 354, 713, 827
DpnII GATC 4 cut(s) 175, 352, 711, 825
DraIII CACNNNGTG 1 cut(s) 1108
DrdI GACNNNNNNGTC 1 cut(s) 632
DseDI GACNNNNNNGTC 1 cut(s) 632
EaeI YGGCCR 1 cut(s) 600
EciI GGCGGA 2 cut(s) 67, 619
Ecl136II GAGCTC 2 cut(s) 784, 1068
Eco130I CCWWGG 1 cut(s) 364
Eco24I GRGCYC 2 cut(s) 786, 1070
Eco32I GATATC 1 cut(s) 30
Eco47I GGWCC 3 cut(s) 63, 103, 809
Eco53kI GAGCTC 2 cut(s) 784, 1068
EcoICRI GAGCTC 2 cut(s) 784, 1068
EcoO109I RGGNCCY 3 cut(s) 63, 103, 809
EcoRII CCWGG 2 cut(s) 378, 398
EcoRV GATATC 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 364
EcoT38I GRGCYC 2 cut(s) 786, 1070
ErhI CCWWGG 1 cut(s) 364
Esp3I CGTCTC 2 cut(s) 79, 283
FaeI CATG 5 cut(s) 208, 292, 777, 790, 1207
FaiI YATR 9 cut(s) 206, 290, 644, 775, 788, 961, 1049, 1116, 1205
FaqI GGGAC 1 cut(s) 49
FatI CATG 5 cut(s) 204, 288, 773, 786, 1203
FbaI TGATCA 2 cut(s) 175, 825
Fnu4HI GCNGC 8 cut(s) 184, 187, 261, 334, 409, 753, 756, 1141
FokI GGATG 5 cut(s) 449, 1039, 1044, 1145, 1183
FriOI GRGCYC 2 cut(s) 786, 1070
Fsp4HI GCNGC 8 cut(s) 184, 187, 261, 334, 409, 753, 756, 1141
FspBI CTAG 4 cut(s) 44, 732, 1023, 1210
GluI GCNGC 8 cut(s) 184, 187, 261, 334, 409, 753, 756, 1141
HaeIII GGCC 3 cut(s) 576, 602, 791
HapII CCGG 4 cut(s) 53, 171, 511, 620
HgaI GACGC 1 cut(s) 178
Hin1II CATG 5 cut(s) 208, 292, 777, 790, 1207
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HinfI GANTC 7 cut(s) 369, 566, 626, 743, 846, 950, 1087
HpaII CCGG 4 cut(s) 53, 171, 511, 620
HphI GGTGA 5 cut(s) 185, 534, 903, 994, 1042
Hpy166II GTNNAC 3 cut(s) 625, 685, 1111
Hpy188I TCNGA 5 cut(s) 34, 60, 118, 283, 943
Hpy188III TCNNGA 6 cut(s) 16, 193, 289, 373, 417, 829
Hpy8I GTNNAC 3 cut(s) 625, 685, 1111
Hpy99I CGWCG 2 cut(s) 89, 194
HpyAV CCTTC 3 cut(s) 190, 336, 557
HpyCH4III ACNGT 3 cut(s) 85, 310, 803
HpyCH4IV ACGT 2 cut(s) 318, 504
HpyCH4V TGCA 7 cut(s) 147, 204, 302, 316, 333, 755, 1140
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 86, 269, 322, 456, 761
HpySE526I ACGT 2 cut(s) 318, 504
Hsp92II CATG 5 cut(s) 208, 292, 777, 790, 1207
KpnI GGTACC 1 cut(s) 389
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Ksp22I TGATCA 2 cut(s) 175, 825
Kzo9I GATC 4 cut(s) 175, 352, 711, 825
LmnI GCTCC 3 cut(s) 366, 869, 1189
Lsp1109I GCAGC 7 cut(s) 173, 247, 345, 420, 739, 767, 1152
LweI GCATC 3 cut(s) 82, 226, 303
MabI ACCWGGT 1 cut(s) 378
MaeI CTAG 4 cut(s) 44, 732, 1023, 1210
MaeII ACGT 2 cut(s) 318, 504
MaeIII GTNAC 4 cut(s) 835, 861, 881, 1156
MalI GATC 4 cut(s) 177, 354, 713, 827
MboI GATC 4 cut(s) 175, 352, 711, 825
MboII GAAGA 9 cut(s) 131, 432, 512, 529, 915, 918, 921, 924, 927
MfeI CAATTG 1 cut(s) 1095
MflI RGATCY 1 cut(s) 711
MhlI GDGCHC 2 cut(s) 786, 1070
MlsI TGGCCA 1 cut(s) 602
MluCI AATT 2 cut(s) 907, 1095
MluNI TGGCCA 1 cut(s) 602
MlyI GAGTC 5 cut(s) 560, 620, 752, 840, 959
MmeI TCCRAC 1 cut(s) 57
Mox20I TGGCCA 1 cut(s) 602
MroNI GCCGGC 1 cut(s) 52
MscI TGGCCA 1 cut(s) 602
MseI TTAA 2 cut(s) 701, 1175
MslI CAYNNNNRTG 1 cut(s) 977
Msp20I TGGCCA 1 cut(s) 602
MspA1I CMGCKG 4 cut(s) 186, 260, 471, 590
MspI CCGG 4 cut(s) 53, 171, 511, 620
MspR9I CCNGG 3 cut(s) 380, 400, 620
MunI CAATTG 1 cut(s) 1095
MvaI CCWGG 2 cut(s) 380, 400
MwoI GCNNNNNNNGC 6 cut(s) 53, 86, 269, 322, 456, 761
NaeI GCCGGC 1 cut(s) 54
NciI CCSGG 1 cut(s) 620
NdeII GATC 4 cut(s) 175, 352, 711, 825
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 5 cut(s) 208, 292, 777, 790, 1207
NlaIV GGNNCC 6 cut(s) 65, 273, 307, 387, 515, 811
NmeAIII GCCGAG 1 cut(s) 552
NmuCI GTSAC 2 cut(s) 835, 1156
PagI TCATGA 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 2 cut(s) 369, 1087
PflFI GACNNNGTC 1 cut(s) 506
PflMI CCANNNNNTGG 1 cut(s) 379
PkrI GCNGC 8 cut(s) 185, 188, 262, 335, 410, 754, 757, 1142
PleI GAGTC 5 cut(s) 560, 620, 751, 840, 958
PpsI GAGTC 5 cut(s) 560, 620, 751, 840, 958
Ppu21I YACGTR 1 cut(s) 319
PpuMI RGGWCCY 3 cut(s) 63, 103, 809
PshAI GACNNNNGTC 1 cut(s) 39
Psp124BI GAGCTC 2 cut(s) 786, 1070
Psp5II RGGWCCY 3 cut(s) 63, 103, 809
Psp6I CCWGG 2 cut(s) 378, 398
PspGI CCWGG 2 cut(s) 378, 398
PspN4I GGNNCC 6 cut(s) 65, 273, 307, 387, 515, 811
PspPI GGNCC 3 cut(s) 63, 103, 809
PspPPI RGGWCCY 3 cut(s) 63, 103, 809
PsrI GAACNNNNNNTAC 2 cut(s) 886, 918
PstI CTGCAG 2 cut(s) 304, 757
PstNI CAGNNNCTG 3 cut(s) 299, 379, 655
PsuI RGATCY 1 cut(s) 711
PsyI GACNNNGTC 1 cut(s) 506
RsaI GTAC 3 cut(s) 387, 821, 895
RsaNI GTAC 3 cut(s) 386, 820, 894
RseI CAYNNNNRTG 1 cut(s) 977
SacI GAGCTC 2 cut(s) 786, 1070
SaqAI TTAA 2 cut(s) 701, 1175
SatI GCNGC 8 cut(s) 184, 187, 261, 334, 409, 753, 756, 1141
Sau3AI GATC 4 cut(s) 175, 352, 711, 825
Sau96I GGNCC 3 cut(s) 63, 103, 809
ScaI AGTACT 2 cut(s) 821, 895
SchI GAGTC 5 cut(s) 560, 620, 752, 840, 959
ScrFI CCNGG 3 cut(s) 380, 400, 620
SduI GDGCHC 2 cut(s) 786, 1070
SexAI ACCWGGT 1 cut(s) 378
SfaNI GCATC 3 cut(s) 82, 226, 303
SfcI CTRYAG 3 cut(s) 300, 753, 1047
SgrAI CRCCGGYG 1 cut(s) 170
SinI GGWCC 3 cut(s) 63, 103, 809
SmiMI CAYNNNNRTG 1 cut(s) 977
SmlI CTYRAG 3 cut(s) 16, 266, 415
SmoI CTYRAG 3 cut(s) 16, 266, 415
Sse9I AATT 2 cut(s) 907, 1095
SsiI CCGC 8 cut(s) 78, 184, 258, 471, 588, 630, 677, 777
SspMI CTAG 4 cut(s) 44, 732, 1023, 1210
SstI GAGCTC 2 cut(s) 786, 1070
StyD4I CCNGG 3 cut(s) 378, 398, 618
StyI CCWWGG 1 cut(s) 364
TaaI ACNGT 3 cut(s) 85, 310, 803
TaiI ACGT 2 cut(s) 321, 507
TaqI TCGA 2 cut(s) 210, 564
TasI AATT 2 cut(s) 907, 1095
TatI WGTACW 2 cut(s) 819, 893
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 2 cut(s) 369, 1087
Tru1I TTAA 2 cut(s) 701, 1175
Tru9I TTAA 2 cut(s) 701, 1175
TscAI CASTG 3 cut(s) 12, 185, 678
TseFI GTSAC 2 cut(s) 835, 1156
TseI GCWGC 7 cut(s) 186, 260, 333, 408, 752, 755, 1140
Tsp45I GTSAC 2 cut(s) 835, 1156
TspDTI ATGAA 1 cut(s) 927
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 3 cut(s) 12, 185, 678
Tth111I GACNNNGTC 1 cut(s) 506
Van91I CCANNNNNTGG 1 cut(s) 379
VpaK11BI GGWCC 3 cut(s) 63, 103, 809
XcmI CCANNNNNNNNNTGG 1 cut(s) 1069
XspI CTAG 4 cut(s) 44, 732, 1023, 1210
ZrmI AGTACT 2 cut(s) 821, 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.