RLG00000033551

CBS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003827
Physical Location & Seq
Reverse (-)
28834538 .. 28835951
1414 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033551

Sequence Viewer

Length: 1215 bp
ATGGCAGTGAACTTCTTAAGGCACGAGGTATCCGACCTCTGTCTAGCCAAGCCGGCTCTGAGGTCCCTCTCCGTCTCCGCCACCGTCGCCGATGCCTTAGAGGCCCTCAAAACCTCCGAAGAAAACTTCCTCAGCGTCTGGGATTGCAACCACCACTCCAAAACCCTCGCTGGCGATCAGTGCCGCTGCGTTGGGAAGGTCTGCATGGTCGATGTGATTTGCTACCTTTCCGAAGATGCCAACCTCGTGTCTCCCTCCGCTGCTCTCAAGGCACCCGTCTCTGAAATCATGACAGAGACTGCAGGAACCGTGATGCACGTTGAGCCTTCTTGCAGCTTACTAAAAGCCATTGATCTAATGCTCCAAGGAATCCAGAACCTGGTGGTACCAATCCAAACCGGGCAAAGCTGCAACTCAAGAAGAAAGCAACACCCAAAACCCATCAACAGCACCACAAGCACCATCCACAACGGACAAGAGTTCTGCTGGCTCACACAGGAAGACGTAGTCCGGTTCCTCCTCAACTCTATTGGGGTCTTCTCACCCCTTCCTGCTCTCTCAATCGAATCACTCGGCCTCATCAACACCGCTGACATCTTGGCCATCAACTACCACTCCCCGGCTGACTCCGCCGTCCAGCTCATAACCCAGTCGCTGACACAACAAACCTCAGTGGCGGTTGTGGACATTGATGGTGTGTTAATCGGCGAGATCTCGCCTTGTACTCTTTCCAGCTGTGACGAGTCGGTGGCTGCAGCCATCGCCACTCTGTCATGCGGAGAGCTCATGGCCTACATTGACTGTGGAGGACCCCCTGAGTACTTGATCAAGATTGTGACTGAGAGACTCAAACAGAGGAAGTTACAAGGAGCTTTGGAGAGTTACTCATCAAGTACTTCAAGTTCCAATTCACCAATGTTTTCTTCTTCTTCTTCATCATCATCAGATGAGGAGTCCTCAGTATATCCAAGTAGCACCAGAATGGTGAGGTCTGGGAGGTTCAGCAGGTCTAATAGCTACTCAGCTAGGATGGTGCGGAGGGCTGAGGCTATAGTGTGTCATCCCAGGAGCTCATTGGTAGCTGTCATGATTCAGGCAATTGCTCACAGAGTTAACTATGTTTGGGTTATGGAGGATGATTGTAGCCTTGTGGGGATTGTCACTTTTTCTGGGATGTTAAAGGTTTTCAGGGAGCATTTGGAAACCATGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS

Protein Analysis

405

Amino Acids

43.65

Weight (kDa)

5.5

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 632
Acc36I ACCTGC 1 cut(s) 996
Acc65I GGTACC 1 cut(s) 385
AccB1I GGYRCC 2 cut(s) 271, 385
AccB7I CCANNNNNTGG 1 cut(s) 379
AciI CCGC 8 cut(s) 78, 184, 258, 588, 630, 677, 777, 1036
AcoI YGGCCR 1 cut(s) 600
AfaI GTAC 4 cut(s) 387, 724, 821, 895
AfiI CCNNNNNNNGG 2 cut(s) 379, 619
AflII CTTAAG 1 cut(s) 16
AgsI TTSAA 1 cut(s) 900
AjnI CCWGG 2 cut(s) 378, 1064
AjuI GAANNNNNNNTTGG 2 cut(s) 907, 939
Alw21I GWGCWC 2 cut(s) 786, 1073
Alw26I GTCTC 5 cut(s) 79, 255, 283, 290, 838
AlwNI CAGNNNCTG 4 cut(s) 138, 299, 379, 655
AoxI GGCC 5 cut(s) 102, 574, 600, 789, 1209
ApeKI GCWGC 6 cut(s) 186, 260, 333, 408, 752, 755
Asp718I GGTACC 1 cut(s) 385
AspS9I GGNCC 3 cut(s) 63, 103, 809
AsuC2I CCSGG 2 cut(s) 400, 620
AsuHPI GGTGA 3 cut(s) 534, 903, 997
AvaII GGWCC 2 cut(s) 63, 809
BalI TGGCCA 1 cut(s) 602
BanI GGYRCC 2 cut(s) 271, 385
BanII GRGCYC 2 cut(s) 786, 1073
BauI CACGAG 2 cut(s) 23, 245
BbsI GAAGAC 2 cut(s) 507, 529
Bbv12I GWGCWC 2 cut(s) 786, 1073
BbvCI CCTCAGC 2 cut(s) 131, 1044
BbvI GCAGC 6 cut(s) 173, 247, 345, 395, 739, 767
BccI CCATC 6 cut(s) 449, 470, 611, 686, 767, 1024
BceAI ACGGC 1 cut(s) 617
BciT130I CCWGG 2 cut(s) 380, 1066
BciVI GTATCC 1 cut(s) 40
BclI TGATCA 1 cut(s) 825
BcnI CCSGG 2 cut(s) 400, 620
BcoDI GTCTC 5 cut(s) 79, 255, 283, 290, 838
BfaI CTAG 3 cut(s) 44, 1026, 1213
BfmI CTRYAG 3 cut(s) 300, 753, 1050
BfrI CTTAAG 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 996
BfuI GTATCC 1 cut(s) 40
BglI GCCNNNNNGGC 2 cut(s) 53, 101
BglII AGATCT 1 cut(s) 711
BisI GCNGC 7 cut(s) 184, 187, 261, 334, 409, 753, 756
BlsI GCNGC 7 cut(s) 185, 188, 262, 335, 410, 754, 757
BmcAI AGTACT 2 cut(s) 821, 895
Bme1390I CCNGG 4 cut(s) 380, 400, 620, 1066
Bme18I GGWCC 2 cut(s) 63, 809
BmgT120I GGNCC 3 cut(s) 63, 103, 809
BmiI GGNNCC 6 cut(s) 65, 273, 307, 387, 515, 811
BmrFI CCNGG 4 cut(s) 380, 400, 620, 1066
BmrI ACTGGG 1 cut(s) 643
BmsI GCATC 3 cut(s) 82, 226, 303
BmuI ACTGGG 1 cut(s) 643
BoxI GACNNNNGTC 1 cut(s) 39
BpiI GAAGAC 2 cut(s) 507, 529
BplI GAGNNNNNCTC 4 cut(s) 869, 901, 941, 973
Bpu10I CCTNAGC 2 cut(s) 131, 1044
BpuEI CTTGAG 2 cut(s) 251, 400
BpuMI CCSGG 2 cut(s) 400, 620
BsaJI CCNNGG 4 cut(s) 364, 618, 1064, 1206
BsaWI WCCGGW 1 cut(s) 510
BsaXI ACNNNNNCTCC 4 cut(s) 140, 170, 599, 629
Bsc4I CCNNNNNNNGG 2 cut(s) 379, 619
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 649
BseBI CCWGG 2 cut(s) 380, 1066
BseDI CCNNGG 4 cut(s) 364, 618, 1064, 1206
BseGI GGATG 5 cut(s) 462, 1035, 1060, 1141, 1179
BseLI CCNNNNNNNGG 2 cut(s) 379, 619
BseMII CTCAG 8 cut(s) 50, 145, 684, 807, 831, 972, 1035, 1035
BseNI ACTGG 1 cut(s) 649
BseRI GAGGAG 2 cut(s) 509, 965
BseXI GCAGC 6 cut(s) 173, 247, 345, 395, 739, 767
BshFI GGCC 5 cut(s) 104, 576, 602, 791, 1211
BshNI GGYRCC 2 cut(s) 271, 385
BsiHKAI GWGCWC 2 cut(s) 786, 1073
BsiSI CCGG 4 cut(s) 53, 399, 511, 620
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 2 cut(s) 379, 619
BsmAI GTCTC 5 cut(s) 79, 255, 283, 290, 838
BsmBI CGTCTC 2 cut(s) 79, 283
BsmFI GGGAC 1 cut(s) 49
BsnI GGCC 5 cut(s) 104, 576, 602, 791, 1211
Bsp1286I GDGCHC 2 cut(s) 786, 1073
Bsp143I GATC 4 cut(s) 175, 352, 711, 825
Bsp19I CCATGG 1 cut(s) 1206
BspACI CCGC 8 cut(s) 78, 184, 258, 588, 630, 677, 777, 1036
BspANI GGCC 5 cut(s) 104, 576, 602, 791, 1211
BspCNI CTCAG 8 cut(s) 51, 144, 683, 808, 832, 971, 1034, 1036
BspHI TCATGA 2 cut(s) 288, 1086
BspLI GGNNCC 6 cut(s) 65, 273, 307, 387, 515, 811
BspMAI CTGCAG 2 cut(s) 304, 757
BspMI ACCTGC 1 cut(s) 996
BspT107I GGYRCC 2 cut(s) 271, 385
BspTI CTTAAG 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 1 cut(s) 649
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 4 cut(s) 364, 618, 1064, 1206
BssMI GATC 4 cut(s) 175, 352, 711, 825
BssSI CACGAG 2 cut(s) 23, 245
BssT1I CCWWGG 2 cut(s) 364, 1206
Bst2BI CACGAG 2 cut(s) 23, 245
Bst2UI CCWGG 2 cut(s) 380, 1066
Bst4CI ACNGT 3 cut(s) 85, 310, 803
BstAFI CTTAAG 1 cut(s) 16
BstC8I GCNNGC 3 cut(s) 54, 172, 488
BstDEI CTNAG 9 cut(s) 59, 97, 131, 670, 816, 840, 958, 1021, 1044
BstDSI CCRYGG 1 cut(s) 1206
BstF5I GGATG 5 cut(s) 462, 1035, 1060, 1141, 1179
BstKTI GATC 4 cut(s) 178, 355, 714, 828
BstMAI GTCTC 5 cut(s) 79, 255, 283, 290, 838
BstMBI GATC 4 cut(s) 175, 352, 711, 825
BstMWI GCNNNNNNNGC 9 cut(s) 53, 86, 101, 180, 269, 322, 456, 629, 761
BstNI CCWGG 2 cut(s) 380, 1066
BstPAI GACNNNNGTC 1 cut(s) 39
BstSCI CCNGG 4 cut(s) 378, 398, 618, 1064
BstSFI CTRYAG 3 cut(s) 300, 753, 1050
BstV1I GCAGC 6 cut(s) 173, 247, 345, 395, 739, 767
BstV2I GAAGAC 2 cut(s) 507, 529
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
BsuI GTATCC 1 cut(s) 40
BsuRI GGCC 5 cut(s) 104, 576, 602, 791, 1211
BtgI CCRYGG 1 cut(s) 1206
BtgZI GCGATG 1 cut(s) 745
BtsCI GGATG 5 cut(s) 462, 1035, 1060, 1141, 1179
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 185, 678
BveI ACCTGC 1 cut(s) 996
Cac8I GCNNGC 3 cut(s) 54, 172, 488
CaiI CAGNNNCTG 4 cut(s) 138, 299, 379, 655
CciI TCATGA 2 cut(s) 288, 1086
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 3 cut(s) 63, 103, 809
CseI GACGC 1 cut(s) 124
CsiI ACCWGGT 1 cut(s) 378
Csp6I GTAC 4 cut(s) 386, 723, 820, 894
CviAII CATG 6 cut(s) 205, 289, 774, 787, 1087, 1207
CviQI GTAC 4 cut(s) 386, 723, 820, 894
DdeI CTNAG 9 cut(s) 59, 97, 131, 670, 816, 840, 958, 1021, 1044
DpnI GATC 4 cut(s) 177, 354, 713, 827
DpnII GATC 4 cut(s) 175, 352, 711, 825
DrdI GACNNNNNNGTC 1 cut(s) 632
DseDI GACNNNNNNGTC 1 cut(s) 632
EaeI YGGCCR 1 cut(s) 600
EciI GGCGGA 2 cut(s) 67, 619
Ecl136II GAGCTC 2 cut(s) 784, 1071
Eco130I CCWWGG 2 cut(s) 364, 1206
Eco24I GRGCYC 2 cut(s) 786, 1073
Eco47I GGWCC 2 cut(s) 63, 809
Eco53kI GAGCTC 2 cut(s) 784, 1071
EcoICRI GAGCTC 2 cut(s) 784, 1071
EcoO109I RGGNCCY 3 cut(s) 63, 103, 809
EcoRII CCWGG 2 cut(s) 378, 1064
EcoT14I CCWWGG 2 cut(s) 364, 1206
EcoT38I GRGCYC 2 cut(s) 786, 1073
ErhI CCWWGG 2 cut(s) 364, 1206
Esp3I CGTCTC 2 cut(s) 79, 283
FaeI CATG 6 cut(s) 208, 292, 777, 790, 1090, 1210
FaqI GGGAC 1 cut(s) 49
FatI CATG 6 cut(s) 204, 288, 773, 786, 1086, 1206
FbaI TGATCA 1 cut(s) 825
Fnu4HI GCNGC 7 cut(s) 184, 187, 261, 334, 409, 753, 756
FokI GGATG 5 cut(s) 449, 1042, 1047, 1148, 1186
FriOI GRGCYC 2 cut(s) 786, 1073
Fsp4HI GCNGC 7 cut(s) 184, 187, 261, 334, 409, 753, 756
FspBI CTAG 3 cut(s) 44, 1026, 1213
GluI GCNGC 7 cut(s) 184, 187, 261, 334, 409, 753, 756
HaeIII GGCC 5 cut(s) 104, 576, 602, 791, 1211
HapII CCGG 4 cut(s) 53, 399, 511, 620
HgaI GACGC 1 cut(s) 124
Hin1II CATG 6 cut(s) 208, 292, 777, 790, 1090, 1210
HincII GTYRAC 1 cut(s) 1114
HindII GTYRAC 1 cut(s) 1114
HinfI GANTC 7 cut(s) 369, 566, 626, 743, 846, 953, 1090
HpaI GTTAAC 1 cut(s) 1114
HpaII CCGG 4 cut(s) 53, 399, 511, 620
HphI GGTGA 3 cut(s) 534, 903, 997
Hpy166II GTNNAC 3 cut(s) 10, 685, 1114
Hpy188I TCNGA 6 cut(s) 34, 60, 118, 232, 283, 946
Hpy188III TCNNGA 5 cut(s) 289, 373, 417, 829, 1087
Hpy8I GTNNAC 3 cut(s) 10, 685, 1114
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 3 cut(s) 190, 336, 557
HpyCH4III ACNGT 3 cut(s) 85, 310, 803
HpyCH4IV ACGT 2 cut(s) 318, 504
HpyCH4V TGCA 7 cut(s) 147, 204, 302, 316, 333, 411, 755
HpyF10VI GCNNNNNNNGC 9 cut(s) 53, 86, 101, 180, 269, 322, 456, 629, 761
HpyF3I CTNAG 9 cut(s) 59, 97, 131, 670, 816, 840, 958, 1021, 1044
HpySE526I ACGT 2 cut(s) 318, 504
Hsp92II CATG 6 cut(s) 208, 292, 777, 790, 1090, 1210
KpnI GGTACC 1 cut(s) 389
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Ksp22I TGATCA 1 cut(s) 825
KspAI GTTAAC 1 cut(s) 1114
Kzo9I GATC 4 cut(s) 175, 352, 711, 825
LmnI GCTCC 4 cut(s) 366, 869, 1068, 1192
Lsp1109I GCAGC 6 cut(s) 173, 247, 345, 395, 739, 767
LweI GCATC 3 cut(s) 82, 226, 303
MabI ACCWGGT 1 cut(s) 378
MaeI CTAG 3 cut(s) 44, 1026, 1213
MaeII ACGT 2 cut(s) 318, 504
MaeIII GTNAC 5 cut(s) 737, 835, 861, 881, 1159
MalI GATC 4 cut(s) 177, 354, 713, 827
MboI GATC 4 cut(s) 175, 352, 711, 825
MboII GAAGA 9 cut(s) 131, 245, 432, 512, 529, 915, 918, 921, 924
MfeI CAATTG 1 cut(s) 1098
MflI RGATCY 1 cut(s) 711
MhlI GDGCHC 2 cut(s) 786, 1073
MlsI TGGCCA 1 cut(s) 602
MluCI AATT 2 cut(s) 907, 1098
MluNI TGGCCA 1 cut(s) 602
MlyI GAGTC 4 cut(s) 620, 752, 840, 962
MmeI TCCRAC 1 cut(s) 57
Mox20I TGGCCA 1 cut(s) 602
MroNI GCCGGC 1 cut(s) 52
MscI TGGCCA 1 cut(s) 602
MseI TTAA 4 cut(s) 17, 701, 1113, 1178
MslI CAYNNNNRTG 1 cut(s) 980
Msp20I TGGCCA 1 cut(s) 602
MspA1I CMGCKG 4 cut(s) 186, 260, 590, 735
MspCI CTTAAG 1 cut(s) 16
MspI CCGG 4 cut(s) 53, 399, 511, 620
MspR9I CCNGG 4 cut(s) 380, 400, 620, 1066
MunI CAATTG 1 cut(s) 1098
MvaI CCWGG 2 cut(s) 380, 1066
MwoI GCNNNNNNNGC 9 cut(s) 53, 86, 101, 180, 269, 322, 456, 629, 761
NaeI GCCGGC 1 cut(s) 54
NciI CCSGG 2 cut(s) 400, 620
NcoI CCATGG 1 cut(s) 1206
NdeII GATC 4 cut(s) 175, 352, 711, 825
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 6 cut(s) 208, 292, 777, 790, 1090, 1210
NlaIV GGNNCC 6 cut(s) 65, 273, 307, 387, 515, 811
NmeAIII GCCGAG 1 cut(s) 552
NmuCI GTSAC 3 cut(s) 737, 835, 1159
PagI TCATGA 2 cut(s) 288, 1086
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 3 cut(s) 369, 566, 1090
PflFI GACNNNGTC 1 cut(s) 506
PflMI CCANNNNNTGG 1 cut(s) 379
PkrI GCNGC 7 cut(s) 185, 188, 262, 335, 410, 754, 757
PleI GAGTC 4 cut(s) 620, 751, 840, 961
PpsI GAGTC 4 cut(s) 620, 751, 840, 961
PpuMI RGGWCCY 2 cut(s) 63, 809
PshAI GACNNNNGTC 1 cut(s) 39
Psp124BI GAGCTC 2 cut(s) 786, 1073
Psp5II RGGWCCY 2 cut(s) 63, 809
Psp6I CCWGG 2 cut(s) 378, 1064
PspGI CCWGG 2 cut(s) 378, 1064
PspN4I GGNNCC 6 cut(s) 65, 273, 307, 387, 515, 811
PspPI GGNCC 3 cut(s) 63, 103, 809
PspPPI RGGWCCY 2 cut(s) 63, 809
PsrI GAACNNNNNNTAC 2 cut(s) 886, 918
PstI CTGCAG 2 cut(s) 304, 757
PstNI CAGNNNCTG 4 cut(s) 138, 299, 379, 655
PsuI RGATCY 1 cut(s) 711
PsyI GACNNNGTC 1 cut(s) 506
PvuII CAGCTG 1 cut(s) 735
RsaI GTAC 4 cut(s) 387, 724, 821, 895
RsaNI GTAC 4 cut(s) 386, 723, 820, 894
RseI CAYNNNNRTG 1 cut(s) 980
SacI GAGCTC 2 cut(s) 786, 1073
SaqAI TTAA 4 cut(s) 17, 701, 1113, 1178
SatI GCNGC 7 cut(s) 184, 187, 261, 334, 409, 753, 756
Sau3AI GATC 4 cut(s) 175, 352, 711, 825
Sau96I GGNCC 3 cut(s) 63, 103, 809
ScaI AGTACT 2 cut(s) 821, 895
SchI GAGTC 4 cut(s) 620, 752, 840, 962
ScrFI CCNGG 4 cut(s) 380, 400, 620, 1066
SduI GDGCHC 2 cut(s) 786, 1073
SexAI ACCWGGT 1 cut(s) 378
SfaNI GCATC 3 cut(s) 82, 226, 303
SfcI CTRYAG 3 cut(s) 300, 753, 1050
SinI GGWCC 2 cut(s) 63, 809
SmiMI CAYNNNNRTG 1 cut(s) 980
SmlI CTYRAG 3 cut(s) 16, 266, 415
SmoI CTYRAG 3 cut(s) 16, 266, 415
Sse9I AATT 2 cut(s) 907, 1098
SsiI CCGC 8 cut(s) 78, 184, 258, 588, 630, 677, 777, 1036
SspMI CTAG 3 cut(s) 44, 1026, 1213
SstI GAGCTC 2 cut(s) 786, 1073
StyD4I CCNGG 4 cut(s) 378, 398, 618, 1064
StyI CCWWGG 2 cut(s) 364, 1206
TaaI ACNGT 3 cut(s) 85, 310, 803
TaiI ACGT 2 cut(s) 321, 507
TaqI TCGA 2 cut(s) 210, 564
TasI AATT 2 cut(s) 907, 1098
TatI WGTACW 3 cut(s) 722, 819, 893
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 3 cut(s) 369, 566, 1090
Tru1I TTAA 4 cut(s) 17, 701, 1113, 1178
Tru9I TTAA 4 cut(s) 17, 701, 1113, 1178
TscAI CASTG 3 cut(s) 12, 185, 678
TseFI GTSAC 3 cut(s) 737, 835, 1159
TseI GCWGC 6 cut(s) 186, 260, 333, 408, 752, 755
Tsp45I GTSAC 3 cut(s) 737, 835, 1159
TspDTI ATGAA 1 cut(s) 924
TspGWI ACGGA 2 cut(s) 61, 486
TspRI CASTG 3 cut(s) 12, 185, 678
Tth111I GACNNNGTC 1 cut(s) 506
Van91I CCANNNNNTGG 1 cut(s) 379
Vha464I CTTAAG 1 cut(s) 16
VpaK11BI GGWCC 2 cut(s) 63, 809
XcmI CCANNNNNNNNNTGG 1 cut(s) 1072
XspI CTAG 3 cut(s) 44, 1026, 1213
ZrmI AGTACT 2 cut(s) 821, 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.