Rorug05G0146300

CBS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003827
Physical Location & Seq
Reverse (-)
13584588 .. 13585969
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0146300.1

Sequence Viewer

Length: 942 bp
ATGGATATCACCGTCCACTGGTCCAATCTTCCAGTCGAGCTCTGGCCATTGATCGGAGAAAAGCTCGAACTGCGCATCCAGTCTCTCCAATTCCGCAGCGTTTGTCATTCATGGCGTTCTTGTGCCTCGCTTCCACCCTTCACTTCCTCCGAAATTCCCTCTCCCATTCTCCGATGGACCCACCTCCTTCCTCTCCCAAAACACCGTCTACCTCCTACAGAGCCCCTCCACGTCATCACTGGCTCCACCGTCGTCTGGAGGTTGGTTGGTCAAGGTCAAAGAGTGCGACATAGAAGAAATCCGATCACCTCCAGGCGAATCAGTGATTTAATGCCTGCTGAGATTGTTGATTGTGCTATTCTGGTTATCTCTGATAAGGGAAATTTGGGTTTTGCTAAAAGTGGAGATGAGAAACTCACATGGTTTAGTAATGGAGGTTTTGTTTTTGATGATGTTATTGTTTATAAGGGTCAGCCATATGTGGTGGATAGCTTGGGTTATGTTTTTAGGATTGATGTATCTTCAGAAGTGATGGTGAAGATTTCGTCGAAAGTGATTGGTTTTGGTGGGAGGAAGCATTTGGTAGAGTCTTGTGGAGAGCTTTTATGTGGTCGATATGTTTGCAAGTTGGAACTGTTGAATGGAGAGTTGGGCAGATGGGTTGAAGTGAAGAGCTTGGGTGATGGAGCGTTTTTCTTGGCTATGGATTGCTGTTTCTCTGTTTCGGCCCAAGAATTGGCTGGGTGCAAAGGGAATTGCATTTACTTCTCAGATGAAAACAATGTTAATCTTGCTCTTAGAGAAGTAACTAGACCAGAGAGTTTCATGTTCTACTTAGAGGACCATAGCATTCAGAAGTTGGGATCTTCCCCAGGCGGTTCCCAGATATTTTGGCCACCTCCAATTGAGCTCGGCTCCACATGTTCATATTCTCTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS

Protein Analysis

313

Amino Acids

34.98

Weight (kDa)

6.46

Isoelectric Point (pI)

48.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 44 - 261 3.8e-29 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
Acc16I TGCGCA 1 cut(s) 74
AccB7I CCANNNNNTGG 1 cut(s) 736
AccI GTMKAC 1 cut(s) 208
AciI CCGC 2 cut(s) 94, 876
AclWI GGATC 1 cut(s) 871
AcoI YGGCCR 2 cut(s) 44, 893
AcsI RAATTY 2 cut(s) 153, 382
AcuI CTGAAG 1 cut(s) 507
AfiI CCNNNNNNNGG 4 cut(s) 18, 53, 255, 736
AflIII ACRYGT 1 cut(s) 920
AgsI TTSAA 2 cut(s) 640, 665
AjiI CACGTC 1 cut(s) 232
AjnI CCWGG 2 cut(s) 311, 871
AjuI GAANNNNNNNTTGG 2 cut(s) 632, 664
AloI GAACNNNNNNTCC 2 cut(s) 60, 92
AluBI AGCT 6 cut(s) 40, 64, 492, 601, 675, 910
AluI AGCT 6 cut(s) 40, 64, 492, 601, 675, 910
Alw21I GWGCWC 2 cut(s) 42, 912
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 1 cut(s) 871
AoxI GGCC 3 cut(s) 44, 726, 893
ApeKI GCWGC 1 cut(s) 96
ApoI RAATTY 2 cut(s) 153, 382
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 4 cut(s) 21, 177, 727, 841
AsuHPI GGTGA 3 cut(s) 298, 547, 692
AvaII GGWCC 3 cut(s) 21, 177, 841
BalI TGGCCA 2 cut(s) 46, 895
BanII GRGCYC 3 cut(s) 42, 225, 912
Bbv12I GWGCWC 2 cut(s) 42, 912
BbvI GCAGC 1 cut(s) 108
BccI CCATC 4 cut(s) 168, 526, 651, 677
BcgI CGANNNNNNTGC 2 cut(s) 603, 637
BciT130I CCWGG 2 cut(s) 313, 873
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 1 cut(s) 810
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
Bme1390I CCNGG 2 cut(s) 313, 873
Bme18I GGWCC 3 cut(s) 21, 177, 841
BmgBI CACGTC 1 cut(s) 232
BmgT120I GGNCC 4 cut(s) 21, 177, 727, 841
BmiI GGNNCC 4 cut(s) 179, 244, 880, 916
BmrFI CCNGG 2 cut(s) 313, 873
BmsI GCATC 1 cut(s) 84
BplI GAGNNNNNCTC 4 cut(s) 48, 80, 899, 931
BpmI CTGGAG 2 cut(s) 277, 295
BsaJI CCNNGG 1 cut(s) 871
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 53, 255, 736
Bse1I ACTGG 4 cut(s) 23, 32, 79, 244
BseBI CCWGG 2 cut(s) 313, 873
BseDI CCNNGG 1 cut(s) 871
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 4 cut(s) 18, 53, 255, 736
BseMII CTCAG 2 cut(s) 330, 783
BseNI ACTGG 4 cut(s) 23, 32, 79, 244
BseXI GCAGC 1 cut(s) 108
BseYI CCCAGC 1 cut(s) 740
BshFI GGCC 3 cut(s) 46, 728, 895
BsiHKAI GWGCWC 2 cut(s) 42, 912
BslI CCNNNNNNNGG 4 cut(s) 18, 53, 255, 736
BsmAI GTCTC 1 cut(s) 87
BsmI GAATGC 1 cut(s) 849
BsnI GGCC 3 cut(s) 46, 728, 895
Bsp1286I GDGCHC 3 cut(s) 42, 225, 912
Bsp143I GATC 3 cut(s) 51, 303, 863
BspACI CCGC 2 cut(s) 94, 876
BspANI GGCC 3 cut(s) 46, 728, 895
BspCNI CTCAG 2 cut(s) 331, 782
BspLI GGNNCC 4 cut(s) 179, 244, 880, 916
BspPI GGATC 1 cut(s) 871
BspQI GCTCTTC 1 cut(s) 665
BsrI ACTGG 4 cut(s) 23, 32, 79, 244
BssECI CCNNGG 1 cut(s) 871
BssMI GATC 3 cut(s) 51, 303, 863
Bst2UI CCWGG 2 cut(s) 313, 873
Bst4CI ACNGT 4 cut(s) 13, 206, 250, 636
Bst6I CTCTTC 1 cut(s) 665
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 4 cut(s) 339, 769, 797, 835
BstF5I GGATG 1 cut(s) 75
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 3 cut(s) 54, 306, 866
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 3 cut(s) 51, 303, 863
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstNI CCWGG 2 cut(s) 313, 873
BstNSI RCATGY 1 cut(s) 924
BstSCI CCNGG 2 cut(s) 311, 871
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 863
BstYI RGATCY 1 cut(s) 863
BsuRI GGCC 3 cut(s) 46, 728, 895
BtrI CACGTC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 75
BtsIMutI CAGTG 3 cut(s) 16, 237, 328
Cac8I GCNNGC 1 cut(s) 336
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 4 cut(s) 21, 177, 727, 841
CviAII CATG 4 cut(s) 111, 420, 826, 921
DdeI CTNAG 4 cut(s) 339, 769, 797, 835
DpnI GATC 3 cut(s) 53, 305, 865
DpnII GATC 3 cut(s) 51, 303, 863
EaeI YGGCCR 2 cut(s) 44, 893
Eam1104I CTCTTC 1 cut(s) 665
EarI CTCTTC 1 cut(s) 665
Ecl136II GAGCTC 2 cut(s) 40, 910
Eco24I GRGCYC 3 cut(s) 42, 225, 912
Eco32I GATATC 1 cut(s) 7
Eco47I GGWCC 3 cut(s) 21, 177, 841
Eco53kI GAGCTC 2 cut(s) 40, 910
Eco57I CTGAAG 1 cut(s) 507
EcoICRI GAGCTC 2 cut(s) 40, 910
EcoRII CCWGG 2 cut(s) 311, 871
EcoRV GATATC 1 cut(s) 7
EcoT38I GRGCYC 3 cut(s) 42, 225, 912
FaeI CATG 4 cut(s) 114, 423, 829, 924
FatI CATG 4 cut(s) 110, 419, 825, 920
FauNDI CATATG 1 cut(s) 478
FblI GTMKAC 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 97
FokI GGATG 1 cut(s) 62
FriOI GRGCYC 3 cut(s) 42, 225, 912
Fsp4HI GCNGC 1 cut(s) 97
FspBI CTAG 1 cut(s) 810
FspI TGCGCA 1 cut(s) 74
GlaI GCGC 1 cut(s) 74
GluI GCNGC 1 cut(s) 97
GsaI CCCAGC 1 cut(s) 744
GsuI CTGGAG 2 cut(s) 277, 295
HaeIII GGCC 3 cut(s) 46, 728, 895
HhaI GCGC 1 cut(s) 75
Hin1II CATG 4 cut(s) 114, 423, 829, 924
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HinfI GANTC 2 cut(s) 318, 587
HphI GGTGA 3 cut(s) 298, 547, 692
Hpy166II GTNNAC 2 cut(s) 16, 209
Hpy188I TCNGA 8 cut(s) 56, 151, 173, 303, 373, 526, 772, 855
Hpy188III TCNNGA 2 cut(s) 256, 935
Hpy8I GTNNAC 2 cut(s) 16, 209
Hpy99I CGWCG 2 cut(s) 254, 550
HpyAV CCTTC 2 cut(s) 148, 197
HpyCH4III ACNGT 4 cut(s) 13, 206, 250, 636
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 3 cut(s) 624, 747, 759
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpyF3I CTNAG 4 cut(s) 339, 769, 797, 835
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 4 cut(s) 114, 423, 829, 924
HspAI GCGC 1 cut(s) 73
Kzo9I GATC 3 cut(s) 51, 303, 863
LguI GCTCTTC 1 cut(s) 665
LmnI GCTCC 3 cut(s) 248, 686, 920
Lsp1109I GCAGC 1 cut(s) 108
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 810
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 805
MalI GATC 3 cut(s) 53, 305, 865
MboI GATC 3 cut(s) 51, 303, 863
MboII GAAGA 6 cut(s) 20, 306, 513, 550, 682, 858
MfeI CAATTG 1 cut(s) 903
MflI RGATCY 1 cut(s) 863
MhlI GDGCHC 3 cut(s) 42, 225, 912
MlsI TGGCCA 2 cut(s) 46, 895
MluCI AATT 6 cut(s) 89, 153, 382, 734, 754, 903
MluNI TGGCCA 2 cut(s) 46, 895
MlyI GAGTC 1 cut(s) 596
MmeI TCCRAC 1 cut(s) 609
Mox20I TGGCCA 2 cut(s) 46, 895
MscI TGGCCA 2 cut(s) 46, 895
MseI TTAA 2 cut(s) 329, 786
Msp20I TGGCCA 2 cut(s) 46, 895
MspR9I CCNGG 2 cut(s) 313, 873
MunI CAATTG 1 cut(s) 903
Mva1269I GAATGC 1 cut(s) 849
MvaI CCWGG 2 cut(s) 313, 873
MwoI GCNNNNNNNGC 1 cut(s) 70
NdeI CATATG 1 cut(s) 478
NdeII GATC 3 cut(s) 51, 303, 863
NlaIII CATG 4 cut(s) 114, 423, 829, 924
NlaIV GGNNCC 4 cut(s) 179, 244, 880, 916
NmeAIII GCCGAG 1 cut(s) 891
NsbI TGCGCA 1 cut(s) 74
NspI RCATGY 1 cut(s) 924
PciI ACATGT 1 cut(s) 920
PciSI GCTCTTC 1 cut(s) 665
PctI GAATGC 1 cut(s) 849
PfeI GAWTC 1 cut(s) 318
PflMI CCANNNNNTGG 1 cut(s) 736
PkrI GCNGC 1 cut(s) 98
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
PscI ACATGT 1 cut(s) 920
PsiI TTATAA 1 cut(s) 465
Psp124BI GAGCTC 2 cut(s) 42, 912
Psp6I CCWGG 2 cut(s) 311, 871
PspFI CCCAGC 1 cut(s) 740
PspGI CCWGG 2 cut(s) 311, 871
PspN4I GGNNCC 4 cut(s) 179, 244, 880, 916
PspPI GGNCC 4 cut(s) 21, 177, 727, 841
PsuI RGATCY 1 cut(s) 863
SacI GAGCTC 2 cut(s) 42, 912
SapI GCTCTTC 1 cut(s) 665
SaqAI TTAA 2 cut(s) 329, 786
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 3 cut(s) 51, 303, 863
Sau96I GGNCC 4 cut(s) 21, 177, 727, 841
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 2 cut(s) 313, 873
SduI GDGCHC 3 cut(s) 42, 225, 912
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 1 cut(s) 216
SinI GGWCC 3 cut(s) 21, 177, 841
Sse9I AATT 6 cut(s) 89, 153, 382, 734, 754, 903
SsiI CCGC 2 cut(s) 94, 876
SspMI CTAG 1 cut(s) 810
SstI GAGCTC 2 cut(s) 42, 912
StyD4I CCNGG 2 cut(s) 311, 871
TaaI ACNGT 4 cut(s) 13, 206, 250, 636
TaiI ACGT 1 cut(s) 234
TaqI TCGA 4 cut(s) 36, 66, 548, 613
TasI AATT 6 cut(s) 89, 153, 382, 734, 754, 903
TfiI GAWTC 1 cut(s) 318
Tru1I TTAA 2 cut(s) 329, 786
Tru9I TTAA 2 cut(s) 329, 786
TscAI CASTG 3 cut(s) 23, 244, 328
TseI GCWGC 1 cut(s) 96
TspDTI ATGAA 4 cut(s) 99, 789, 814, 915
TspRI CASTG 3 cut(s) 23, 244, 328
Van91I CCANNNNNTGG 1 cut(s) 736
VpaK11BI GGWCC 3 cut(s) 21, 177, 841
XapI RAATTY 2 cut(s) 153, 382
XceI RCATGY 1 cut(s) 924
XcmI CCANNNNNNNNNTGG 3 cut(s) 39, 236, 737
XmiI GTMKAC 1 cut(s) 208
XspI CTAG 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.