Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003827

Physical Location & Seq

Genomic Coordinates Reverse (-)

76148718 .. 76156724

Gene Structure 8007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGGAGGTTTTTACGTCGAACGGAGTTTCGCCGTTTTCGGAAAAAATACGGCCAAAACCGTGGCTTCTAGATGTAGTACTTGAAACATCCCTCAGGGACGGAATGAATCTTGTCAGTTATGAATATGTAGCATTGCCAAGATGCAAAGAAAGGGGTCCTTATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003825 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009311 GO:0009312 GO:0009743 GO:0009756 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009987 GO:0010033 GO:0010154 GO:0010182 GO:0016051 GO:0016311 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016788 GO:0016791 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0033554 GO:0034637 GO:0035251 GO:0042221 GO:0042546 GO:0042578 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044424 GO:0044464 GO:0046351 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051716 GO:0061458 GO:0065007 GO:0070413 GO:0070887 GO:0071310 GO:0071322 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_transf_20 Trehalose_PPase

Protein Analysis

55

Amino Acids

6.32

Weight (kDa)

6.13

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_20	PF00982	24 - 47	6.5e-06	Glycosyltransferase family 20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27460 AT5G53750
fragaria_vesca	FvH4_3g20540 FvH4_3g20550
malus_domestica	MD03G1224200.v1.1 MD11G1242900.v1.1
prunus_persica	Prupe.4G185300_v2.0.a1
pyrus_communis	pycom03g17260 pycom11g21370
rosa_chinensis	RchiOBHm_Chr5g0034461 RchiOBHm_Chr5g0034541 RchiOBHm_Chr6g0280011
rosa_laevigata	RLG00000033551 RLG00000033553
rosa_multiflora	Rmu_sc0006060.1_g000004 Rmu_sc0007995.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045780 Rroxscaffold_1G00045840 Rroxscaffold_2G00138100 Rroxscaffold_4G00318160
rosa_rugosa	Rorug05G0146300
rosa_samantha	Rh5AG238400 Rh5BG238500 Rh5BG238700 Rh5BG239000 Rh5CG269400 Rh5DG246500 Rh5DG246800 Rh5DG247200 Rh6CG244900 Rh6DG235700
rosa_wichuraiana	Rw5G021750 Rw5G021770 Rw5G021840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	50
AfaI	GTAC	1 cut(s)	78
AgsI	TTSAA	1 cut(s)	83
AoxI	GGCC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	155
AxyI	CCTNAGG	1 cut(s)	92
BceAI	ACGGC	2 cut(s)	16, 65
BfaI	CTAG	1 cut(s)	68
BmcAI	AGTACT	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	156
BmsI	GCATC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	59
Bse21I	CCTNAGG	1 cut(s)	92
Bse3DI	GCAATG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	86
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	52
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	60
BstDEI	CTNAG	2 cut(s)	92, 165
BstDSI	CCRYGG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	86
BstXI	CCANNNNNNTGG	1 cut(s)	60
Bsu36I	CCTNAGG	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	52
BtgI	CCRYGG	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	77
CviJI	RGCY	2 cut(s)	52, 64
CviKI_1	RGCY	2 cut(s)	52, 64
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	2 cut(s)	92, 165
EaeI	YGGCCR	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	155
Eco81I	CCTNAGG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	155
FaiI	YATR	2 cut(s)	120, 126
FalI	AAGNNNNNCTT	1 cut(s)	142
FaqI	GGGAC	1 cut(s)	110
FokI	GGATG	1 cut(s)	73
FspBI	CTAG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	68
Hpy99I	CGWCG	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	144
HpyF3I	CTNAG	2 cut(s)	92, 165
HpySE526I	ACGT	1 cut(s)	14
LpnPI	CCDG	1 cut(s)	79
LweI	GCATC	1 cut(s)	131
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	1 cut(s)	14
MnlI	CCTC	1 cut(s)	101
NlaIV	GGNNCC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	106
PpuMI	RGGWCCY	1 cut(s)	155
Psp5II	RGGWCCY	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	155
PspPPI	RGGWCCY	1 cut(s)	155
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
Sau96I	GGNCC	1 cut(s)	155
ScaI	AGTACT	1 cut(s)	78
SetI	ASST	2 cut(s)	9, 17
SfaNI	GCATC	1 cut(s)	131
SgeI	CNNG	6 cut(s)	72, 80, 92, 106, 122, 150
SinI	GGWCC	1 cut(s)	155
SspMI	CTAG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	1 cut(s)	17
TatI	WGTACW	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	106
TspDTI	ATGAA	2 cut(s)	119, 135
TspGWI	ACGGA	2 cut(s)	36, 114
VpaK11BI	GGWCC	1 cut(s)	155
XbaI	TCTAGA	1 cut(s)	67
XspI	CTAG	1 cut(s)	68
ZrmI	AGTACT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.