Rroxscaffold_1G00045840

CBS domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
64982008 .. 64983430
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045840.1

Sequence Viewer

Length: 1086 bp
ATGGCAGTGAGCTTCTTGAGGCACGAGGTATCCGACCTCTGTCTAGCCAAGCCGGCTCTGAGGTCCCTCTCCGTCTCCGCCACCGTCGCCGATGCCTTAGGGGCCCTCAAAACCTCCGAAGAAAACTTCCTCAGCATTTGGGATTGCAACCACCACTCCAAAACCCTCGCCGGCGATCAGTGCCGCTGCGTCGGGAAGGTCTGCATGGTCGATGTGATTTGCTACCTTTCCCAAGATGCCAACCTCGTGTCTCCCTCCGCTGCTCTAAAGGCACCCGTCTCTGAAATCATGACAGAGACTGCAGGAACCGTGATGCACGTAGAGCCTTCTTGCAGCTTACTAAAAGCCATTGATCTAATGCTCCAAGGAATCCAGAACCTGGTCGTACCAATCCAAACCAGGCAAAGCAGCAACTCAAGAAGAAAGCAATACCCAAAACCCATCAACAGCACCACAAGCACCATCCACAACGGACAAGAGTTCTGCTGGCTCACACAGGAAGACGTAGTCCGGTTCCTCCTCAACTCTATTGGGGTCTTCTCACCCCTTCCTGCTCTCTCAATCGACTCACTCGGCCTCATCAACACCGCTGACATCTTGGCCATCAACTACCACTCCCCGGCTGACTCCGCCGTCCAGCTCATAACTCAGTCGCTGACACAACAAACCTCAGTGGCGGTTGTGGACATTGATGGTGTGTTAATCGGCGAGATCTCGCCTTTTACTCTTTCCAGCTGTGACGAGTCGGTGGCTGCAGCCATCGCTACTCTGTCATGCGGAGAGCTCATGGCCTACATTGACTGTGGAGGACCCCTGAATGAGGAGTCCTCAGTATATCCAAGTAGCACCAGAATGGTGAGGTCTGGGAGGTTCAGCAGGTCTAATAGCTACTCAGCTAGGATGGTGAGGAGGGCTGAGGCTATAGTGTGTCATCCCAAGAGCTCATTGGTGGCTGTGATGATTCAGGCAATTGCTCACAGAGTGAACTATGTCTGGGTTATTGAGGATGATTGCAGCCTTGTGGGGATTGTCACTTTTTCTGGGATGTTAAAGGTTTTCAGGGAGCATTTGGAAACCATGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

361

Amino Acids

39.0

Weight (kDa)

5.59

Isoelectric Point (pI)

52.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 632
Acc36I ACCTGC 1 cut(s) 867
AccB1I GGYRCC 1 cut(s) 271
AccB7I CCANNNNNTGG 1 cut(s) 379
AciI CCGC 7 cut(s) 78, 184, 258, 588, 630, 677, 777
AcoI YGGCCR 1 cut(s) 600
AdeI CACNNNGTG 1 cut(s) 982
AfaI GTAC 1 cut(s) 387
AfiI CCNNNNNNNGG 3 cut(s) 379, 619, 820
AjnI CCWGG 2 cut(s) 378, 398
AluBI AGCT 8 cut(s) 12, 336, 640, 735, 784, 888, 896, 942
AluI AGCT 8 cut(s) 12, 336, 640, 735, 784, 888, 896, 942
Alw21I GWGCWC 2 cut(s) 786, 944
Alw26I GTCTC 4 cut(s) 79, 255, 283, 290
AlwNI CAGNNNCTG 3 cut(s) 299, 379, 655
AoxI GGCC 4 cut(s) 102, 574, 600, 789
ApaI GGGCCC 1 cut(s) 106
ApeKI GCWGC 7 cut(s) 186, 260, 333, 408, 752, 755, 1014
AspS9I GGNCC 4 cut(s) 63, 102, 103, 809
AsuC2I CCSGG 1 cut(s) 620
AsuHPI GGTGA 3 cut(s) 534, 868, 916
AvaII GGWCC 2 cut(s) 63, 809
AxyI CCTNAGG 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 602
BanI GGYRCC 1 cut(s) 271
BanII GRGCYC 3 cut(s) 106, 786, 944
BauI CACGAG 2 cut(s) 23, 245
BbsI GAAGAC 2 cut(s) 507, 529
Bbv12I GWGCWC 2 cut(s) 786, 944
BbvCI CCTCAGC 2 cut(s) 131, 915
BbvI GCAGC 7 cut(s) 173, 247, 345, 420, 739, 767, 1026
BccI CCATC 6 cut(s) 449, 470, 611, 686, 767, 895
BceAI ACGGC 1 cut(s) 617
BciT130I CCWGG 2 cut(s) 380, 400
BciVI GTATCC 1 cut(s) 40
BcnI CCSGG 1 cut(s) 620
BcoDI GTCTC 4 cut(s) 79, 255, 283, 290
BfaI CTAG 3 cut(s) 44, 897, 1084
BfmI CTRYAG 3 cut(s) 300, 753, 921
BfuAI ACCTGC 1 cut(s) 867
BfuI GTATCC 1 cut(s) 40
BglI GCCNNNNNGGC 2 cut(s) 53, 101
BglII AGATCT 1 cut(s) 711
BisI GCNGC 8 cut(s) 184, 187, 261, 334, 409, 753, 756, 1015
BlsI GCNGC 8 cut(s) 185, 188, 262, 335, 410, 754, 757, 1016
Bme1390I CCNGG 3 cut(s) 380, 400, 620
Bme18I GGWCC 2 cut(s) 63, 809
BmgT120I GGNCC 4 cut(s) 63, 102, 103, 809
BmiI GGNNCC 7 cut(s) 65, 103, 104, 273, 307, 515, 811
BmrFI CCNGG 3 cut(s) 380, 400, 620
BmsI GCATC 3 cut(s) 82, 226, 303
BoxI GACNNNNGTC 1 cut(s) 39
BpiI GAAGAC 2 cut(s) 507, 529
BplI GAGNNNNNCTC 2 cut(s) 812, 844
Bpu10I CCTNAGC 2 cut(s) 131, 915
BpuEI CTTGAG 2 cut(s) 37, 400
BpuMI CCSGG 1 cut(s) 620
BsaAI YACGTR 1 cut(s) 319
BsaJI CCNNGG 3 cut(s) 364, 618, 1077
BsaWI WCCGGW 1 cut(s) 510
BsaXI ACNNNNNCTCC 4 cut(s) 140, 170, 599, 629
Bsc4I CCNNNNNNNGG 3 cut(s) 379, 619, 820
Bse118I RCCGGY 2 cut(s) 52, 170
Bse21I CCTNAGG 1 cut(s) 97
BseBI CCWGG 2 cut(s) 380, 400
BseDI CCNNGG 3 cut(s) 364, 618, 1077
BseGI GGATG 5 cut(s) 462, 906, 931, 1012, 1050
BseLI CCNNNNNNNGG 3 cut(s) 379, 619, 820
BseMII CTCAG 7 cut(s) 50, 145, 662, 684, 843, 906, 906
BseRI GAGGAG 3 cut(s) 509, 836, 922
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 7 cut(s) 173, 247, 345, 420, 739, 767, 1026
BshFI GGCC 4 cut(s) 104, 576, 602, 791
BshNI GGYRCC 1 cut(s) 271
BsiHKAI GWGCWC 2 cut(s) 786, 944
BsiSI CCGG 4 cut(s) 53, 171, 511, 620
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 3 cut(s) 379, 619, 820
BsmAI GTCTC 4 cut(s) 79, 255, 283, 290
BsmBI CGTCTC 2 cut(s) 79, 283
BsmFI GGGAC 1 cut(s) 49
BsnI GGCC 4 cut(s) 104, 576, 602, 791
Bsp120I GGGCCC 1 cut(s) 102
Bsp1286I GDGCHC 3 cut(s) 106, 786, 944
Bsp143I GATC 3 cut(s) 175, 352, 711
Bsp19I CCATGG 1 cut(s) 1077
BspACI CCGC 7 cut(s) 78, 184, 258, 588, 630, 677, 777
BspANI GGCC 4 cut(s) 104, 576, 602, 791
BspCNI CTCAG 7 cut(s) 51, 144, 661, 683, 842, 905, 907
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 7 cut(s) 65, 103, 104, 273, 307, 515, 811
BspMAI CTGCAG 2 cut(s) 304, 757
BspMI ACCTGC 1 cut(s) 867
BspT107I GGYRCC 1 cut(s) 271
BsrFI RCCGGY 2 cut(s) 52, 170
BssAI RCCGGY 2 cut(s) 52, 170
BssECI CCNNGG 3 cut(s) 364, 618, 1077
BssMI GATC 3 cut(s) 175, 352, 711
BssSI CACGAG 2 cut(s) 23, 245
BssT1I CCWWGG 2 cut(s) 364, 1077
Bst2BI CACGAG 2 cut(s) 23, 245
Bst2UI CCWGG 2 cut(s) 380, 400
Bst4CI ACNGT 3 cut(s) 85, 310, 803
BstBAI YACGTR 1 cut(s) 319
BstC8I GCNNGC 3 cut(s) 54, 172, 488
BstDEI CTNAG 8 cut(s) 59, 97, 131, 648, 670, 829, 892, 915
BstDSI CCRYGG 1 cut(s) 1077
BstENI CCTNNNNNAGG 1 cut(s) 818
BstF5I GGATG 5 cut(s) 462, 906, 931, 1012, 1050
BstKTI GATC 3 cut(s) 178, 355, 714
BstMAI GTCTC 4 cut(s) 79, 255, 283, 290
BstMBI GATC 3 cut(s) 175, 352, 711
BstMWI GCNNNNNNNGC 9 cut(s) 53, 86, 101, 180, 269, 322, 456, 629, 761
BstNI CCWGG 2 cut(s) 380, 400
BstPAI GACNNNNGTC 1 cut(s) 39
BstSCI CCNGG 3 cut(s) 378, 398, 618
BstSFI CTRYAG 3 cut(s) 300, 753, 921
BstSLI GKGCMC 1 cut(s) 106
BstV1I GCAGC 7 cut(s) 173, 247, 345, 420, 739, 767, 1026
BstV2I GAAGAC 2 cut(s) 507, 529
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
Bsu36I CCTNAGG 1 cut(s) 97
BsuI GTATCC 1 cut(s) 40
BsuRI GGCC 4 cut(s) 104, 576, 602, 791
BtgI CCRYGG 1 cut(s) 1077
BtgZI GCGATG 1 cut(s) 745
BtsCI GGATG 5 cut(s) 462, 906, 931, 1012, 1050
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 185, 678
BveI ACCTGC 1 cut(s) 867
Cac8I GCNNGC 3 cut(s) 54, 172, 488
CaiI CAGNNNCTG 3 cut(s) 299, 379, 655
CciI TCATGA 1 cut(s) 288
Cfr10I RCCGGY 2 cut(s) 52, 170
Cfr13I GGNCC 4 cut(s) 63, 102, 103, 809
CseI GACGC 1 cut(s) 178
CsiI ACCWGGT 1 cut(s) 378
Csp6I GTAC 1 cut(s) 386
CviAII CATG 5 cut(s) 205, 289, 774, 787, 1078
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 8 cut(s) 59, 97, 131, 648, 670, 829, 892, 915
DpnI GATC 3 cut(s) 177, 354, 713
DpnII GATC 3 cut(s) 175, 352, 711
DraIII CACNNNGTG 1 cut(s) 982
DrdI GACNNNNNNGTC 1 cut(s) 632
DseDI GACNNNNNNGTC 1 cut(s) 632
EaeI YGGCCR 1 cut(s) 600
EciI GGCGGA 2 cut(s) 67, 619
Ecl136II GAGCTC 2 cut(s) 784, 942
Eco130I CCWWGG 2 cut(s) 364, 1077
Eco24I GRGCYC 3 cut(s) 106, 786, 944
Eco47I GGWCC 2 cut(s) 63, 809
Eco53kI GAGCTC 2 cut(s) 784, 942
Eco81I CCTNAGG 1 cut(s) 97
EcoICRI GAGCTC 2 cut(s) 784, 942
EcoNI CCTNNNNNAGG 1 cut(s) 818
EcoO109I RGGNCCY 4 cut(s) 63, 102, 103, 809
EcoRII CCWGG 2 cut(s) 378, 398
EcoT14I CCWWGG 2 cut(s) 364, 1077
EcoT38I GRGCYC 3 cut(s) 106, 786, 944
ErhI CCWWGG 2 cut(s) 364, 1077
Esp3I CGTCTC 2 cut(s) 79, 283
FaeI CATG 5 cut(s) 208, 292, 777, 790, 1081
FaiI YATR 9 cut(s) 206, 290, 644, 775, 788, 835, 923, 990, 1079
FaqI GGGAC 1 cut(s) 49
FatI CATG 5 cut(s) 204, 288, 773, 786, 1077
Fnu4HI GCNGC 8 cut(s) 184, 187, 261, 334, 409, 753, 756, 1015
FokI GGATG 5 cut(s) 449, 913, 918, 1019, 1057
FriOI GRGCYC 3 cut(s) 106, 786, 944
Fsp4HI GCNGC 8 cut(s) 184, 187, 261, 334, 409, 753, 756, 1015
FspBI CTAG 3 cut(s) 44, 897, 1084
GluI GCNGC 8 cut(s) 184, 187, 261, 334, 409, 753, 756, 1015
HaeIII GGCC 4 cut(s) 104, 576, 602, 791
HapII CCGG 4 cut(s) 53, 171, 511, 620
HgaI GACGC 1 cut(s) 178
Hin1II CATG 5 cut(s) 208, 292, 777, 790, 1081
HinfI GANTC 6 cut(s) 369, 566, 626, 743, 824, 961
HpaII CCGG 4 cut(s) 53, 171, 511, 620
HphI GGTGA 3 cut(s) 534, 868, 916
Hpy166II GTNNAC 2 cut(s) 685, 985
Hpy188I TCNGA 4 cut(s) 34, 60, 118, 283
Hpy188III TCNNGA 5 cut(s) 16, 193, 289, 373, 417
Hpy8I GTNNAC 2 cut(s) 685, 985
Hpy99I CGWCG 2 cut(s) 89, 194
HpyAV CCTTC 3 cut(s) 190, 336, 557
HpyCH4III ACNGT 3 cut(s) 85, 310, 803
HpyCH4IV ACGT 2 cut(s) 318, 504
HpyCH4V TGCA 7 cut(s) 147, 204, 302, 316, 333, 755, 1014
HpyF10VI GCNNNNNNNGC 9 cut(s) 53, 86, 101, 180, 269, 322, 456, 629, 761
HpyF3I CTNAG 8 cut(s) 59, 97, 131, 648, 670, 829, 892, 915
HpySE526I ACGT 2 cut(s) 318, 504
Hsp92II CATG 5 cut(s) 208, 292, 777, 790, 1081
KroI GCCGGC 2 cut(s) 52, 170
KroNI GCCGGC 2 cut(s) 54, 172
Kzo9I GATC 3 cut(s) 175, 352, 711
LmnI GCTCC 2 cut(s) 366, 1063
Lsp1109I GCAGC 7 cut(s) 173, 247, 345, 420, 739, 767, 1026
LweI GCATC 3 cut(s) 82, 226, 303
MabI ACCWGGT 1 cut(s) 378
MaeI CTAG 3 cut(s) 44, 897, 1084
MaeII ACGT 2 cut(s) 318, 504
MaeIII GTNAC 2 cut(s) 737, 1030
MalI GATC 3 cut(s) 177, 354, 713
MboI GATC 3 cut(s) 175, 352, 711
MboII GAAGA 4 cut(s) 131, 432, 512, 529
MfeI CAATTG 1 cut(s) 969
MflI RGATCY 1 cut(s) 711
MhlI GDGCHC 3 cut(s) 106, 786, 944
MlsI TGGCCA 1 cut(s) 602
MluCI AATT 1 cut(s) 969
MluNI TGGCCA 1 cut(s) 602
MlyI GAGTC 4 cut(s) 560, 620, 752, 833
MmeI TCCRAC 1 cut(s) 57
Mox20I TGGCCA 1 cut(s) 602
MreI CGCCGGCG 1 cut(s) 170
MroNI GCCGGC 2 cut(s) 52, 170
MscI TGGCCA 1 cut(s) 602
MseI TTAA 2 cut(s) 701, 1049
MslI CAYNNNNRTG 1 cut(s) 851
Msp20I TGGCCA 1 cut(s) 602
MspA1I CMGCKG 4 cut(s) 186, 260, 590, 735
MspI CCGG 4 cut(s) 53, 171, 511, 620
MspR9I CCNGG 3 cut(s) 380, 400, 620
MunI CAATTG 1 cut(s) 969
MvaI CCWGG 2 cut(s) 380, 400
MwoI GCNNNNNNNGC 9 cut(s) 53, 86, 101, 180, 269, 322, 456, 629, 761
NaeI GCCGGC 2 cut(s) 54, 172
NciI CCSGG 1 cut(s) 620
NcoI CCATGG 1 cut(s) 1077
NdeII GATC 3 cut(s) 175, 352, 711
NgoMIV GCCGGC 2 cut(s) 52, 170
NlaIII CATG 5 cut(s) 208, 292, 777, 790, 1081
NlaIV GGNNCC 7 cut(s) 65, 103, 104, 273, 307, 515, 811
NmeAIII GCCGAG 1 cut(s) 552
NmuCI GTSAC 2 cut(s) 737, 1030
PagI TCATGA 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PdiI GCCGGC 2 cut(s) 54, 172
PfeI GAWTC 2 cut(s) 369, 961
PflFI GACNNNGTC 1 cut(s) 506
PflMI CCANNNNNTGG 1 cut(s) 379
PkrI GCNGC 8 cut(s) 185, 188, 262, 335, 410, 754, 757, 1016
PleI GAGTC 4 cut(s) 560, 620, 751, 832
PpsI GAGTC 4 cut(s) 560, 620, 751, 832
Ppu21I YACGTR 1 cut(s) 319
PpuMI RGGWCCY 2 cut(s) 63, 809
PshAI GACNNNNGTC 1 cut(s) 39
Psp124BI GAGCTC 2 cut(s) 786, 944
Psp5II RGGWCCY 2 cut(s) 63, 809
Psp6I CCWGG 2 cut(s) 378, 398
PspGI CCWGG 2 cut(s) 378, 398
PspN4I GGNNCC 7 cut(s) 65, 103, 104, 273, 307, 515, 811
PspOMI GGGCCC 1 cut(s) 102
PspPI GGNCC 4 cut(s) 63, 102, 103, 809
PspPPI RGGWCCY 2 cut(s) 63, 809
PstI CTGCAG 2 cut(s) 304, 757
PstNI CAGNNNCTG 3 cut(s) 299, 379, 655
PsuI RGATCY 1 cut(s) 711
PsyI GACNNNGTC 1 cut(s) 506
PvuII CAGCTG 1 cut(s) 735
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
RseI CAYNNNNRTG 1 cut(s) 851
SacI GAGCTC 2 cut(s) 786, 944
SaqAI TTAA 2 cut(s) 701, 1049
SatI GCNGC 8 cut(s) 184, 187, 261, 334, 409, 753, 756, 1015
Sau3AI GATC 3 cut(s) 175, 352, 711
Sau96I GGNCC 4 cut(s) 63, 102, 103, 809
SchI GAGTC 4 cut(s) 560, 620, 752, 833
ScrFI CCNGG 3 cut(s) 380, 400, 620
SduI GDGCHC 3 cut(s) 106, 786, 944
SexAI ACCWGGT 1 cut(s) 378
SfaNI GCATC 3 cut(s) 82, 226, 303
SfcI CTRYAG 3 cut(s) 300, 753, 921
SgrAI CRCCGGYG 1 cut(s) 170
SinI GGWCC 2 cut(s) 63, 809
SmiMI CAYNNNNRTG 1 cut(s) 851
SmlI CTYRAG 2 cut(s) 16, 415
SmoI CTYRAG 2 cut(s) 16, 415
Sse9I AATT 1 cut(s) 969
SsiI CCGC 7 cut(s) 78, 184, 258, 588, 630, 677, 777
SspMI CTAG 3 cut(s) 44, 897, 1084
SstI GAGCTC 2 cut(s) 786, 944
StyD4I CCNGG 3 cut(s) 378, 398, 618
StyI CCWWGG 2 cut(s) 364, 1077
TaaI ACNGT 3 cut(s) 85, 310, 803
TaiI ACGT 2 cut(s) 321, 507
TaqI TCGA 2 cut(s) 210, 564
TasI AATT 1 cut(s) 969
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 2 cut(s) 369, 961
Tru1I TTAA 2 cut(s) 701, 1049
Tru9I TTAA 2 cut(s) 701, 1049
TscAI CASTG 3 cut(s) 12, 185, 678
TseFI GTSAC 2 cut(s) 737, 1030
TseI GCWGC 7 cut(s) 186, 260, 333, 408, 752, 755, 1014
Tsp45I GTSAC 2 cut(s) 737, 1030
TspGWI ACGGA 2 cut(s) 61, 486
TspRI CASTG 3 cut(s) 12, 185, 678
Tth111I GACNNNGTC 1 cut(s) 506
Van91I CCANNNNNTGG 1 cut(s) 379
VpaK11BI GGWCC 2 cut(s) 63, 809
XagI CCTNNNNNAGG 1 cut(s) 818
XcmI CCANNNNNNNNNTGG 1 cut(s) 943
XspI CTAG 3 cut(s) 44, 897, 1084
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.