FvH4_3g21022

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013640
Physical Location & Seq
Forward (+)
14046822 .. 14048257
1436 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21022.t1

Sequence Viewer

Length: 1275 bp
ATGACTTTGTTAAAAAGGGATGATGATGTTGTTGATATGGTGGCTTTTGTGCCAGATGTGAGGATAATTGAAGTGTACTTGGAGCATATACTAGACTCTGCTCCTTGTGATATTGCTAACTTAGGATGGGATCTCAATGACTTTGGAATAGACCTCAGTAAAAGTTCTAATGTGGGAGTTAGAAATAGAAAAAATATTGTGACTGAGGAGTTAGGATTAGATCACTTAGATGAAGATGACAATGCTTGTGATTTAATGCATGTTGAACTAGCTAATGAGAAGGATGACAATGCTAATGAAAATTTAGAGGGAGATTATCATCCTGAAACTGATTTTGTTGATAGTGATTACAGTGGGGATGATGATTATGAAGAGGTTCGTTATAGTGATGGCATAACAAGTGGTATTCATGTTCAAGCTAGTGGCAAAGATGGTGAAAGTGCTCGTGTCAATGCATGTGCTAATGATGGTGAAACTACTTGTGGGAGTGATGCAAATATTACAAATAATTTTAGTCATAGCATGGAACCTGAAAGTTGGGATATGGTAATGAATAATTTTCAATTGGAAGATGTAGAAGAGGAAGAAGACCATCTTTCAAATGAGGAACTGAGAAGCATCCATGACTCTGATGATGAAAATAATTCTGGGGGAAAAAGGGAGCTAGAGTTTAACCCTGAAACTGATATGAAGGACCTCCAATTTGAGTTAGGGATGTTATTTAGTGATTGTCATGTTTTCAGAGCAGCCATTCGAGAGTATGCAATGTTGCACGGTTATGAGATGAGATGGAAGAGAAATGAGGAATTTAAGCTGAAGGTTTTATGCAAAGGCGAATTCTGCCCTTGGCTAATTTATGCTGGAAAGAGAGCTTCTAATGATTATACATTGCAGGTCAAAAAATATGTTGGAGAGCATTCTTGCTTAAGGGTTTATAATAATCGCACTTGTATAGCAGATTGGTTAGCAAAAAAGTTCAAGAAGAGACTGCAATCAGATCCAAATATGCCTGTAAATGCAATAGTAGATGCTGTCTCTGATGAGTGGACTGTTGGGATTTCTAACATGAAAGCATATAGAGCGAAAAGACAAGCAATCGATGAAATAGAAGGAACCCTGAAAAAGCAATATGATAGGCTTTGGGATTATTGTGAAGAGTTGAAGAGGACTAATCCTGGCACTACAACTAAAATGCAATGTGACTTTATTGATGGCTATCCAAAGTTCAAAAGTAGTGGAGTTGGAATCAAGGGATTCCTGGACATGGTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

425

Amino Acids

48.44

Weight (kDa)

4.54

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 233 - 292 2.3e-09 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 936
Acc36I ACCTGC 1 cut(s) 883
AclWI GGATC 2 cut(s) 138, 992
AcsI RAATTY 3 cut(s) 301, 806, 836
AcuI CTGAAG 1 cut(s) 836
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 1264
AflII CTTAAG 1 cut(s) 925
AgsI TTSAA 8 cut(s) 71, 266, 416, 563, 600, 979, 1162, 1228
AjnI CCWGG 2 cut(s) 1174, 1257
AluBI AGCT 5 cut(s) 272, 419, 664, 814, 872
AluI AGCT 5 cut(s) 272, 419, 664, 814, 872
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 2 cut(s) 979, 1039
AlwI GGATC 2 cut(s) 138, 992
ApeKI GCWGC 1 cut(s) 746
ApoI RAATTY 3 cut(s) 301, 806, 836
ArsI GACNNNNNNTTYG 2 cut(s) 686, 718
Asp700I GAANNNNTTC 1 cut(s) 375
AspS9I GGNCC 1 cut(s) 694
AsuHPI GGTGA 2 cut(s) 446, 482
AvaII GGWCC 1 cut(s) 694
BauI CACGAG 1 cut(s) 444
BbsI GAAGAC 1 cut(s) 594
Bbv12I GWGCWC 1 cut(s) 445
BbvI GCAGC 1 cut(s) 758
BccI CCATC 7 cut(s) 120, 383, 425, 461, 600, 783, 1205
BciT130I CCWGG 2 cut(s) 1176, 1259
BcoDI GTCTC 2 cut(s) 979, 1039
BfaI CTAG 4 cut(s) 92, 269, 420, 665
BfrI CTTAAG 1 cut(s) 925
BfuAI ACCTGC 1 cut(s) 883
BisI GCNGC 1 cut(s) 747
BlsI GCNGC 1 cut(s) 748
Bme1390I CCNGG 2 cut(s) 1176, 1259
Bme18I GGWCC 1 cut(s) 694
BmgT120I GGNCC 1 cut(s) 694
BmiI GGNNCC 2 cut(s) 528, 1114
BmrFI CCNGG 2 cut(s) 1176, 1259
BmsI GCATC 3 cut(s) 481, 627, 1018
BpiI GAAGAC 1 cut(s) 594
Bsa29I ATCGAT 1 cut(s) 1098
BsaBI GATNNNNATC 2 cut(s) 318, 1215
BsaJI CCNNGG 1 cut(s) 845
BsaXI ACNNNNNCTCC 2 cut(s) 653, 683
Bsc4I CCNNNNNNNGG 1 cut(s) 1264
Bse3DI GCAATG 3 cut(s) 771, 887, 1202
Bse8I GATNNNNATC 2 cut(s) 318, 1215
BseBI CCWGG 2 cut(s) 1176, 1259
BseCI ATCGAT 1 cut(s) 1098
BseDI CCNNGG 1 cut(s) 845
BseGI GGATG 7 cut(s) 25, 131, 289, 319, 364, 618, 720
BseJI GATNNNNATC 2 cut(s) 318, 1215
BseLI CCNNNNNNNGG 1 cut(s) 1264
BseMI GCAATG 3 cut(s) 771, 887, 1202
BseMII CTCAG 3 cut(s) 169, 195, 602
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 758
BshVI ATCGAT 1 cut(s) 1098
BsiHKAI GWGCWC 1 cut(s) 445
BslI CCNNNNNNNGG 1 cut(s) 1264
BsmAI GTCTC 2 cut(s) 979, 1039
BsmI GAATGC 1 cut(s) 916
Bsp1286I GDGCHC 1 cut(s) 445
Bsp143I GATC 3 cut(s) 130, 220, 997
BspCNI CTCAG 3 cut(s) 168, 196, 603
BspDI ATCGAT 1 cut(s) 1098
BspLI GGNNCC 2 cut(s) 528, 1114
BspMI ACCTGC 1 cut(s) 883
BspPI GGATC 2 cut(s) 138, 992
BspTI CTTAAG 1 cut(s) 925
BsrDI GCAATG 3 cut(s) 771, 887, 1202
BssECI CCNNGG 1 cut(s) 845
BssMI GATC 3 cut(s) 130, 220, 997
BssSI CACGAG 1 cut(s) 444
BssT1I CCWWGG 1 cut(s) 845
Bst2BI CACGAG 1 cut(s) 444
Bst2UI CCWGG 2 cut(s) 1176, 1259
Bst4CI ACNGT 3 cut(s) 353, 776, 1051
Bst6I CTCTTC 6 cut(s) 366, 573, 788, 977, 1149, 1157
BstAFI CTTAAG 1 cut(s) 925
BstDEI CTNAG 5 cut(s) 121, 155, 204, 226, 611
BstF5I GGATG 7 cut(s) 25, 131, 289, 319, 364, 618, 720
BstKTI GATC 3 cut(s) 133, 223, 1000
BstMAI GTCTC 2 cut(s) 979, 1039
BstMBI GATC 3 cut(s) 130, 220, 997
BstMWI GCNNNNNNNGC 2 cut(s) 840, 1079
BstNI CCWGG 2 cut(s) 1176, 1259
BstNSI RCATGY 2 cut(s) 263, 459
BstSCI CCNGG 2 cut(s) 1174, 1257
BstV1I GCAGC 1 cut(s) 758
BstV2I GAAGAC 1 cut(s) 594
BstX2I RGATCY 2 cut(s) 130, 997
BstYI RGATCY 2 cut(s) 130, 997
Bsu15I ATCGAT 1 cut(s) 1098
BsuTUI ATCGAT 1 cut(s) 1098
BtsCI GGATG 7 cut(s) 25, 131, 289, 319, 364, 618, 720
BtsIMutI CAGTG 1 cut(s) 358
BveI ACCTGC 1 cut(s) 883
Cfr13I GGNCC 1 cut(s) 694
ClaI ATCGAT 1 cut(s) 1098
Csp6I GTAC 1 cut(s) 76
CspCI CAANNNNNGTGG 2 cut(s) 1216, 1251
CviAII CATG 8 cut(s) 260, 410, 456, 523, 623, 734, 1066, 1264
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 5 cut(s) 121, 155, 204, 226, 611
DpnI GATC 3 cut(s) 132, 222, 999
DpnII GATC 3 cut(s) 130, 220, 997
Eam1104I CTCTTC 6 cut(s) 366, 573, 788, 977, 1149, 1157
EarI CTCTTC 6 cut(s) 366, 573, 788, 977, 1149, 1157
Eco130I CCWWGG 1 cut(s) 845
Eco47I GGWCC 1 cut(s) 694
Eco57I CTGAAG 1 cut(s) 836
EcoO109I RGGNCCY 1 cut(s) 694
EcoRI GAATTC 1 cut(s) 836
EcoRII CCWGG 2 cut(s) 1174, 1257
EcoT14I CCWWGG 1 cut(s) 845
EcoT22I ATGCAT 2 cut(s) 261, 457
ErhI CCWWGG 1 cut(s) 845
FaeI CATG 8 cut(s) 263, 413, 459, 526, 626, 737, 1069, 1267
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FatI CATG 8 cut(s) 259, 409, 455, 522, 622, 733, 1065, 1263
Fnu4HI GCNGC 1 cut(s) 747
FokI GGATG 7 cut(s) 32, 138, 296, 306, 371, 605, 727
Fsp4HI GCNGC 1 cut(s) 747
FspBI CTAG 4 cut(s) 92, 269, 420, 665
GluI GCNGC 1 cut(s) 747
Hin1II CATG 8 cut(s) 263, 413, 459, 526, 626, 737, 1069, 1267
HinfI GANTC 4 cut(s) 95, 626, 1245, 1254
HphI GGTGA 2 cut(s) 446, 482
Hpy166II GTNNAC 2 cut(s) 76, 1047
Hpy188I TCNGA 4 cut(s) 631, 743, 997, 1039
Hpy188III TCNNGA 4 cut(s) 323, 755, 979, 1272
Hpy8I GTNNAC 2 cut(s) 76, 1047
HpyAV CCTTC 4 cut(s) 274, 685, 811, 1103
HpyCH4III ACNGT 3 cut(s) 353, 776, 1051
HpyF10VI GCNNNNNNNGC 2 cut(s) 840, 1079
HpyF3I CTNAG 5 cut(s) 121, 155, 204, 226, 611
Hsp92II CATG 8 cut(s) 263, 413, 459, 526, 626, 737, 1069, 1267
Kzo9I GATC 3 cut(s) 130, 220, 997
LmnI GCTCC 3 cut(s) 82, 106, 661
Lsp1109I GCAGC 1 cut(s) 758
LweI GCATC 3 cut(s) 481, 627, 1018
MaeI CTAG 4 cut(s) 92, 269, 420, 665
MaeIII GTNAC 2 cut(s) 199, 1199
MalI GATC 3 cut(s) 132, 222, 999
MboI GATC 3 cut(s) 130, 220, 997
MfeI CAATTG 1 cut(s) 563
MflI RGATCY 2 cut(s) 130, 997
MhlI GDGCHC 1 cut(s) 445
MlyI GAGTC 2 cut(s) 89, 620
MmeI TCCRAC 2 cut(s) 889, 1222
Mph1103I ATGCAT 2 cut(s) 261, 457
MroXI GAANNNNTTC 1 cut(s) 375
MseI TTAA 5 cut(s) 11, 254, 672, 810, 926
MslI CAYNNNNRTG 2 cut(s) 228, 777
MspCI CTTAAG 1 cut(s) 925
MspR9I CCNGG 2 cut(s) 1176, 1259
MunI CAATTG 1 cut(s) 563
Mva1269I GAATGC 1 cut(s) 916
MvaI CCWGG 2 cut(s) 1176, 1259
MwoI GCNNNNNNNGC 2 cut(s) 840, 1079
NdeII GATC 3 cut(s) 130, 220, 997
NlaIII CATG 8 cut(s) 263, 413, 459, 526, 626, 737, 1069, 1267
NlaIV GGNNCC 2 cut(s) 528, 1114
NmuCI GTSAC 2 cut(s) 199, 1199
NsiI ATGCAT 2 cut(s) 261, 457
NspI RCATGY 2 cut(s) 263, 459
PctI GAATGC 1 cut(s) 916
PdmI GAANNNNTTC 1 cut(s) 375
PfeI GAWTC 2 cut(s) 1245, 1254
PfoI TCCNGGA 1 cut(s) 1257
PkrI GCNGC 1 cut(s) 748
PleI GAGTC 2 cut(s) 89, 620
PpsI GAGTC 2 cut(s) 89, 620
PpuMI RGGWCCY 1 cut(s) 694
PsiI TTATAA 1 cut(s) 936
Psp5II RGGWCCY 1 cut(s) 694
Psp6I CCWGG 2 cut(s) 1174, 1257
PspGI CCWGG 2 cut(s) 1174, 1257
PspN4I GGNNCC 2 cut(s) 528, 1114
PspPI GGNCC 1 cut(s) 694
PspPPI RGGWCCY 1 cut(s) 694
PsuI RGATCY 2 cut(s) 130, 997
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 2 cut(s) 228, 777
SaqAI TTAA 5 cut(s) 11, 254, 672, 810, 926
SatI GCNGC 1 cut(s) 747
Sau3AI GATC 3 cut(s) 130, 220, 997
Sau96I GGNCC 1 cut(s) 694
SchI GAGTC 2 cut(s) 89, 620
ScrFI CCNGG 2 cut(s) 1176, 1259
SduI GDGCHC 1 cut(s) 445
SfaNI GCATC 3 cut(s) 481, 627, 1018
SinI GGWCC 1 cut(s) 694
SmiMI CAYNNNNRTG 2 cut(s) 228, 777
SmlI CTYRAG 1 cut(s) 925
SmoI CTYRAG 1 cut(s) 925
SspI AATATT 2 cut(s) 196, 499
SspMI CTAG 4 cut(s) 92, 269, 420, 665
StyD4I CCNGG 2 cut(s) 1174, 1257
StyI CCWWGG 1 cut(s) 845
TaaI ACNGT 3 cut(s) 353, 776, 1051
TaqI TCGA 2 cut(s) 754, 1098
TatI WGTACW 1 cut(s) 75
TfiI GAWTC 2 cut(s) 1245, 1254
Tru1I TTAA 5 cut(s) 11, 254, 672, 810, 926
Tru9I TTAA 5 cut(s) 11, 254, 672, 810, 926
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 2 cut(s) 199, 1199
TseI GCWGC 1 cut(s) 746
Tsp45I GTSAC 2 cut(s) 199, 1199
TspDTI ATGAA 9 cut(s) 246, 312, 384, 398, 566, 651, 704, 1082, 1116
TspRI CASTG 1 cut(s) 358
Vha464I CTTAAG 1 cut(s) 925
VpaK11BI GGWCC 1 cut(s) 694
XapI RAATTY 3 cut(s) 301, 806, 836
XceI RCATGY 2 cut(s) 263, 459
XmnI GAANNNNTTC 1 cut(s) 375
XspI CTAG 4 cut(s) 92, 269, 420, 665
Zsp2I ATGCAT 2 cut(s) 261, 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.