Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013640

Physical Location & Seq

Genomic Coordinates Reverse (-)

44898384 .. 44910521

Gene Structure 12138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG342900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGATGATATTAATAGTAACCTACTTGGTAGTAGTTGTAGCAGTGGACAGATGAAGCATCAAACTCAAAGTCAAGCAAAGACGAGAAGCTCCAGCTGCAAATCCAAGAAGAAGCCGATCAAAGTGGTTTACATATCAAACCCGATGAAGATTACAACGAGCGCCTCCGAATTCAGGGCTTTGGTTCAGCAGCTCACCGGCCAAGATGCTGACGACCTGCCAGATCTCCATCGTACTAGCAACAACCACCTCATCACACCAATGGTCAGCAGCAGGCGGCAGCCAGAAAGTTCAAACTCAAATACCACCACCCAATATTATGATGATCATGATGAGCATCACCAGCACTTGTATGACGACGTCGATGGTCTTTTTGTGCCTGAAATGCTTGATAGCTTTGTGCCTGCCGTCAAGGTTGATCCAAATAAATTCACAATTAGAATGTATCACAATGGTGGTATGCTACCGCTGTGCTATGTAACTAGGGATATTGCTCACTTTGACTATTGTGACAAGGATAATATGTCTATGTGTGAGATTATGGCAATGGGAAAAGAATTAGGTCATCATGGCATAATAAATTATTGGTATAAGTTTCCTGGGATGGGAATTGGAGCTGCCATGACTTTATTAAAAAGGGATGCTGATGTTGTTGATATGGTGGCTTTTGTGCCAGATGTGAGGATAATTCCAGTTTACTTGGAGCATGTACTAGACTCTCCTCCTTGTGATATTGCTAACTTAGGGTGGGACCTCCATGACTTTGGAATAGACCTCAGTAAAAGTTCTTATGTGGGAGCTAGGAAGAGAAAAAGTATTGAGATTGAAGAGTCAGGGTTAGATGAAGATGACAATGCTTATGATATAATGCAGACTGAATTAGCTGATAATACAGATGACAATAATAATAACATTTCAGATAGAGATTATGATCCTGAAGTTGATTTTGTTGATAGTGATTACAGTGGGGATGACGATTCGGACGAGGTTGGTTATAATGATGGGATAGCAAGTAGTGTTGATGCTGAAGCTCCTAGGAAAGATGGTGGAAGTGCTCGTGTCAATGCAAGCCAAACATCGACAGCTCGTACATCTAATGCTGGGAAAAGAGGAAGACCACCAAAGAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

377

Amino Acids

41.93

Weight (kDa)

4.8

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	45 - 71	4.1e-12	VQ motif
PB1-like	PF26130	143 - 235	6.9e-11	PB1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013640)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21022 FvH4_4g33231
pyrus_communis	pycom16g21430 pycom16g26140
rosa_laevigata	RLG00000032953
rosa_multiflora	Rmu_sc0006269.1_g000023
rosa_roxburghii	Rroxscaffold_5G00358510 Rroxscaffold_6G00397970 Rroxscaffold_7G00172770
rosa_rugosa	Rorug02G0235100
rosa_samantha	Rh2CG306600 Rh2DG342900 Rh4AG104100 Rh4AG115200 Rh4CG112400 Rh5DG113200 Rh6CG362000
rosa_wichuraiana	Rw1G022480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	996
AatII	GACGTC	1 cut(s)	363
Acc36I	ACCTGC	1 cut(s)	225
AciI	CCGC	2 cut(s)	277, 467
AclWI	GGATC	2 cut(s)	413, 926
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	2 cut(s)	170, 428
AcuI	CTGAAG	2 cut(s)	957, 1047
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	3 cut(s)	235, 711, 1090
AfiI	CCNNNNNNNGG	2 cut(s)	174, 605
AgsI	TTSAA	2 cut(s)	294, 827
AjnI	CCWGG	1 cut(s)	598
AleI	CACNNNNGTG	1 cut(s)	453
AluBI	AGCT	9 cut(s)	90, 96, 193, 396, 617, 800, 884, 1031, 1085
AluI	AGCT	9 cut(s)	90, 96, 193, 396, 617, 800, 884, 1031, 1085
Alw21I	GWGCWC	1 cut(s)	1057
AlwI	GGATC	2 cut(s)	413, 926
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	5 cut(s)	96, 190, 270, 280, 617
ApoI	RAATTY	2 cut(s)	170, 428
ArsI	GACNNNNNNTTYG	2 cut(s)	55, 87
AseI	ATTAAT	1 cut(s)	12
AspA2I	CCTAGG	1 cut(s)	1034
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	751
AsuHPI	GGTGA	2 cut(s)	187, 332
AvaII	GGWCC	1 cut(s)	751
AvrII	CCTAGG	1 cut(s)	1034
BauI	CACGAG	1 cut(s)	1056
BbsI	GAAGAC	1 cut(s)	1120
Bbv12I	GWGCWC	1 cut(s)	1057
BbvI	GCAGC	5 cut(s)	83, 202, 282, 292, 604
BccI	CCATC	5 cut(s)	237, 359, 598, 995, 1037
BceAI	ACGGC	1 cut(s)	392
BciT130I	CCWGG	1 cut(s)	600
BclI	TGATCA	1 cut(s)	325
BfaI	CTAG	5 cut(s)	237, 483, 713, 801, 1035
BfoI	RGCGCY	1 cut(s)	165
BfuAI	ACCTGC	1 cut(s)	225
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	6 cut(s)	97, 191, 271, 278, 281, 618
BlnI	CCTAGG	1 cut(s)	1034
BlsI	GCNGC	6 cut(s)	98, 192, 272, 279, 282, 619
Bme1390I	CCNGG	1 cut(s)	600
Bme18I	GGWCC	1 cut(s)	751
BmgT120I	GGNCC	1 cut(s)	751
BmiI	GGNNCC	1 cut(s)	752
BmrFI	CCNGG	1 cut(s)	600
BmsI	GCATC	5 cut(s)	67, 196, 346, 631, 1012
BpiI	GAAGAC	1 cut(s)	1120
BpmI	CTGGAG	1 cut(s)	76
BsaBI	GATNNNNATC	3 cut(s)	228, 336, 930
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	599, 1034
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 605
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	692
Bse3DI	GCAATG	1 cut(s)	552
Bse8I	GATNNNNATC	3 cut(s)	228, 336, 930
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	2 cut(s)	599, 1034
BseGI	GGATG	4 cut(s)	10, 609, 646, 976
BseJI	GATNNNNATC	3 cut(s)	228, 336, 930
BseLI	CCNNNNNNNGG	2 cut(s)	174, 605
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	1 cut(s)	790
BseNI	ACTGG	1 cut(s)	692
BseRI	GAGGAG	1 cut(s)	711
BseXI	GCAGC	5 cut(s)	83, 202, 282, 292, 604
BseYI	CCCAGC	1 cut(s)	1100
BshFI	GGCC	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	1057
BsiSI	CCGG	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	764
BslI	CCNNNNNNNGG	2 cut(s)	174, 605
BsmFI	GGGAC	1 cut(s)	764
BsnI	GGCC	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	1057
Bsp143I	GATC	5 cut(s)	117, 223, 325, 418, 931
BspACI	CCGC	2 cut(s)	277, 467
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	789
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	752
BspMI	ACCTGC	1 cut(s)	225
BspPI	GGATC	2 cut(s)	413, 926
BsrDI	GCAATG	1 cut(s)	552
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	692
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	2 cut(s)	599, 1034
BssMI	GATC	5 cut(s)	117, 223, 325, 418, 931
BssNI	GRCGYC	1 cut(s)	360
BssSI	CACGAG	1 cut(s)	1056
BssT1I	CCWWGG	1 cut(s)	1034
Bst2BI	CACGAG	1 cut(s)	1056
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	1 cut(s)	965
Bst6I	CTCTTC	2 cut(s)	800, 822
BstACI	GRCGYC	1 cut(s)	360
BstC8I	GCNNGC	3 cut(s)	275, 405, 1069
BstDEI	CTNAG	2 cut(s)	742, 776
BstF5I	GGATG	4 cut(s)	10, 609, 646, 976
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	5 cut(s)	120, 226, 328, 421, 934
BstMBI	GATC	5 cut(s)	117, 223, 325, 418, 931
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 343, 385
BstNI	CCWGG	1 cut(s)	600
BstNSI	RCATGY	1 cut(s)	710
BstSCI	CCNGG	1 cut(s)	598
BstV1I	GCAGC	5 cut(s)	83, 202, 282, 292, 604
BstV2I	GAAGAC	1 cut(s)	1120
BstX2I	RGATCY	1 cut(s)	223
BstXI	CCANNNNNNTGG	1 cut(s)	764
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	201
BtsCI	GGATG	4 cut(s)	10, 609, 646, 976
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	2 cut(s)	49, 970
BveI	ACCTGC	1 cut(s)	225
Cac8I	GCNNGC	3 cut(s)	275, 405, 1069
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	751
Csp6I	GTAC	3 cut(s)	234, 710, 1089
CviAII	CATG	5 cut(s)	329, 569, 622, 707, 758
CviQI	GTAC	3 cut(s)	234, 710, 1089
DdeI	CTNAG	2 cut(s)	742, 776
DpnI	GATC	5 cut(s)	119, 225, 327, 420, 933
DpnII	GATC	5 cut(s)	117, 223, 325, 418, 931
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	2 cut(s)	800, 822
EarI	CTCTTC	2 cut(s)	800, 822
Eco130I	CCWWGG	1 cut(s)	1034
Eco47I	GGWCC	1 cut(s)	751
Eco57I	CTGAAG	2 cut(s)	957, 1047
EcoO109I	RGGNCCY	1 cut(s)	751
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	1034
ErhI	CCWWGG	1 cut(s)	1034
FaeI	CATG	5 cut(s)	332, 572, 625, 710, 761
FaqI	GGGAC	1 cut(s)	764
FatI	CATG	5 cut(s)	328, 568, 621, 706, 757
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	6 cut(s)	97, 191, 271, 278, 281, 618
FokI	GGATG	4 cut(s)	17, 616, 653, 983
Fsp4HI	GCNGC	6 cut(s)	97, 191, 271, 278, 281, 618
FspBI	CTAG	5 cut(s)	237, 483, 713, 801, 1035
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	6 cut(s)	97, 191, 271, 278, 281, 618
GsaI	CCCAGC	1 cut(s)	1104
GsuI	CTGGAG	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	198
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	5 cut(s)	332, 572, 625, 710, 761
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HinfI	GANTC	3 cut(s)	716, 830, 977
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	2 cut(s)	187, 332
Hpy166II	GTNNAC	3 cut(s)	47, 130, 697
Hpy188I	TCNGA	3 cut(s)	169, 919, 982
Hpy188III	TCNNGA	2 cut(s)	329, 935
Hpy8I	GTNNAC	3 cut(s)	47, 130, 697
Hpy99I	CGWCG	2 cut(s)	362, 365
HpyAV	CCTTC	1 cut(s)	1120
HpyCH4III	ACNGT	1 cut(s)	965
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	3 cut(s)	99, 871, 1067
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 343, 385
HpyF3I	CTNAG	2 cut(s)	742, 776
HpySE526I	ACGT	1 cut(s)	360
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	5 cut(s)	332, 572, 625, 710, 761
HspAI	GCGC	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	5 cut(s)	117, 223, 325, 418, 931
LmnI	GCTCC	5 cut(s)	95, 614, 703, 797, 1036
Lsp1109I	GCAGC	5 cut(s)	83, 202, 282, 292, 604
LweI	GCATC	5 cut(s)	67, 196, 346, 631, 1012
MaeI	CTAG	5 cut(s)	237, 483, 713, 801, 1035
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	3 cut(s)	17, 478, 509
MalI	GATC	5 cut(s)	119, 225, 327, 420, 933
MboI	GATC	5 cut(s)	117, 223, 325, 418, 931
MboII	GAAGA	6 cut(s)	121, 160, 817, 839, 857, 1125
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	1057
MluCI	AATT	8 cut(s)	170, 428, 435, 557, 580, 609, 687, 878
MlyI	GAGTC	2 cut(s)	710, 839
MnlI	CCTC	8 cut(s)	175, 260, 675, 732, 764, 785, 979, 1103
MseI	TTAA	2 cut(s)	12, 632
MslI	CAYNNNNRTG	3 cut(s)	260, 351, 453
MspA1I	CMGCKG	2 cut(s)	96, 469
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	600
MvaI	CCWGG	1 cut(s)	600
MwoI	GCNNNNNNNGC	3 cut(s)	96, 343, 385
NdeII	GATC	5 cut(s)	117, 223, 325, 418, 931
NlaIII	CATG	5 cut(s)	332, 572, 625, 710, 761
NlaIV	GGNNCC	1 cut(s)	752
NmuCI	GTSAC	1 cut(s)	509
NspI	RCATGY	1 cut(s)	710
OliI	CACNNNNGTG	1 cut(s)	453
PagI	TCATGA	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	1 cut(s)	981
PfeI	GAWTC	1 cut(s)	977
PflFI	GACNNNGTC	1 cut(s)	359
PkrI	GCNGC	6 cut(s)	98, 192, 272, 279, 282, 619
PleI	GAGTC	2 cut(s)	710, 838
PpsI	GAGTC	2 cut(s)	710, 838
PpuMI	RGGWCCY	1 cut(s)	751
PshBI	ATTAAT	1 cut(s)	12
PsiI	TTATAA	1 cut(s)	996
Psp5II	RGGWCCY	1 cut(s)	751
Psp6I	CCWGG	1 cut(s)	598
PspFI	CCCAGC	1 cut(s)	1100
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	1 cut(s)	752
PspPI	GGNCC	1 cut(s)	751
PspPPI	RGGWCCY	1 cut(s)	751
PsuI	RGATCY	1 cut(s)	223
PsyI	GACNNNGTC	1 cut(s)	359
PvuII	CAGCTG	1 cut(s)	96
RsaI	GTAC	3 cut(s)	235, 711, 1090
RsaNI	GTAC	3 cut(s)	234, 710, 1089
RseI	CAYNNNNRTG	3 cut(s)	260, 351, 453
SaqAI	TTAA	2 cut(s)	12, 632
SatI	GCNGC	6 cut(s)	97, 191, 271, 278, 281, 618
Sau3AI	GATC	5 cut(s)	117, 223, 325, 418, 931
Sau96I	GGNCC	1 cut(s)	751
SchI	GAGTC	2 cut(s)	710, 839
ScrFI	CCNGG	1 cut(s)	600
SduI	GDGCHC	1 cut(s)	1057
SfaNI	GCATC	5 cut(s)	67, 196, 346, 631, 1012
SinI	GGWCC	1 cut(s)	751
SmiMI	CAYNNNNRTG	3 cut(s)	260, 351, 453
Sse9I	AATT	8 cut(s)	170, 428, 435, 557, 580, 609, 687, 878
SsiI	CCGC	2 cut(s)	277, 467
SspI	AATATT	1 cut(s)	317
SspMI	CTAG	5 cut(s)	237, 483, 713, 801, 1035
StyD4I	CCNGG	1 cut(s)	598
StyI	CCWWGG	1 cut(s)	1034
TaaI	ACNGT	1 cut(s)	965
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	2 cut(s)	363, 1079
TasI	AATT	8 cut(s)	170, 428, 435, 557, 580, 609, 687, 878
TatI	WGTACW	1 cut(s)	709
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	977
Tru1I	TTAA	2 cut(s)	12, 632
Tru9I	TTAA	2 cut(s)	12, 632
TscAI	CASTG	2 cut(s)	49, 970
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	5 cut(s)	96, 190, 270, 280, 617
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	3 cut(s)	68, 161, 858
TspRI	CASTG	2 cut(s)	49, 970
Tth111I	GACNNNGTC	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	751
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	2 cut(s)	170, 428
XceI	RCATGY	1 cut(s)	710
XmaJI	CCTAGG	1 cut(s)	1034
XspI	CTAG	5 cut(s)	237, 483, 713, 801, 1035
ZraI	GACGTC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.