Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013640

Physical Location & Seq

Genomic Coordinates Forward (+)

31524372 .. 31525439

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33231.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGACTTTGTTAAAAAGGGATGATGATGTTGTTGATATGGTGGCTTTTGTGCCAGATGTGAGGATAATTGAAGTGTACTTAGAGCATATACTAGACTCTGCTCCTTGTGATATTGCTAACTTAGGGTGGGATCTCAATGACTTTGGAATAGACCTCAGTAAAAGTTCTAATGTGGGAGTTAGAAATAGAAAAAATATTGTGACTAAAGAGTTAGGATTAGATCACTTAGATGAAGATGACAATGCTTGTGATTTAATGCATGTTGAACTAGCTAATGAGAAGGATGACAATGATAACGAAAATTTAGAGGGAGATTATCATCCTGAAGCTAATTTTGTTGATAGTGATTACAGTGGGGATGATGATTATGAAGAGGTTGGTTATAGTGATGGCATAACAAGTGGTATTGATGTTCAAGCTAGTGGCAAAGATGGTGAAAGTGCTCGTGTCAATGCATGTGCTAATGATGGTGAAACTACTTATGGGAGTGAAGCAAATATTACAAATAATTTTAGTCATAGCATGGAACCTGAAAGTTGGGATATGGTAATGAATAATTTTCAATTGAAAGATGTAGAAGAGGAAGAAGACCATCTTTCAAATGAGGAACTGAGAAGCATCCATGACTCTGATGATGGAAATAATTCTGGGGGAAAAAGGGAGCTAGAGTTTAACTCTGAAACTGATATGAAGGACCCCCAATTTGAGTTAGGGATGTTATTTAGTAATTGTCATGTTTTCAGAGCAGCCATTCTAGAGTATGCAATGTTGCACGGTTATGAGATGAGATGGAAGATAAATGAGGAATTTAAGCTGAAGGTCAAAAAATATGTTGGAGAGCATTCTTGCTCAAGGGTTTATAATAATTGCATTTGTACAGCAGATTGGTTAGCAAAAAAGTTCAAGAAGAGACTGCAATCAGATCCAAATATGCCTGTAAATGCAATAGTAGATGTTGCCTCTGATGAGTGGACTGCTGGGTTTCTAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

331

Amino Acids

37.32

Weight (kDa)

4.3

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013640)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21022 FvH4_4g33231
pyrus_communis	pycom16g21430 pycom16g26140
rosa_laevigata	RLG00000032953
rosa_multiflora	Rmu_sc0006269.1_g000023
rosa_roxburghii	Rroxscaffold_5G00358510 Rroxscaffold_6G00397970 Rroxscaffold_7G00172770
rosa_rugosa	Rorug02G0235100
rosa_samantha	Rh2CG306600 Rh2DG342900 Rh4AG104100 Rh4AG115200 Rh4CG112400 Rh5DG113200 Rh6CG362000
rosa_wichuraiana	Rw1G022480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	861
AclWI	GGATC	2 cut(s)	138, 917
AcsI	RAATTY	2 cut(s)	301, 806
AcuI	CTGAAG	2 cut(s)	345, 836
AfaI	GTAC	2 cut(s)	77, 877
AgsI	TTSAA	7 cut(s)	71, 266, 416, 563, 568, 600, 904
AluBI	AGCT	5 cut(s)	272, 329, 419, 664, 814
AluI	AGCT	5 cut(s)	272, 329, 419, 664, 814
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	1 cut(s)	904
AlwI	GGATC	2 cut(s)	138, 917
ApeKI	GCWGC	1 cut(s)	746
ApoI	RAATTY	2 cut(s)	301, 806
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
Asp700I	GAANNNNTTC	1 cut(s)	643
AspS9I	GGNCC	1 cut(s)	694
AsuHPI	GGTGA	2 cut(s)	446, 482
AvaII	GGWCC	1 cut(s)	694
BauI	CACGAG	1 cut(s)	444
BbsI	GAAGAC	1 cut(s)	594
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	1 cut(s)	758
BccI	CCATC	6 cut(s)	383, 425, 461, 600, 629, 783
BcoDI	GTCTC	1 cut(s)	904
BfaI	CTAG	5 cut(s)	92, 269, 420, 665, 755
BisI	GCNGC	1 cut(s)	747
BlsI	GCNGC	1 cut(s)	748
Bme18I	GGWCC	1 cut(s)	694
BmgT120I	GGNCC	1 cut(s)	694
BmiI	GGNNCC	2 cut(s)	528, 696
BmsI	GCATC	1 cut(s)	627
BpiI	GAAGAC	1 cut(s)	594
BplI	GAGNNNNNCTC	2 cut(s)	659, 691
BpuEI	CTTGAG	1 cut(s)	835
BsaBI	GATNNNNATC	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	653, 683
Bse3DI	GCAATG	1 cut(s)	771
Bse8I	GATNNNNATC	1 cut(s)	318
BseGI	GGATG	6 cut(s)	25, 289, 319, 364, 618, 720
BseJI	GATNNNNATC	1 cut(s)	318
BseMI	GCAATG	1 cut(s)	771
BseMII	CTCAG	2 cut(s)	169, 602
BseXI	GCAGC	1 cut(s)	758
BseYI	CCCAGC	1 cut(s)	977
BsiHKAI	GWGCWC	1 cut(s)	445
BsmAI	GTCTC	1 cut(s)	904
BsmI	GAATGC	1 cut(s)	841
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp1407I	TGTACA	1 cut(s)	875
Bsp143I	GATC	3 cut(s)	130, 220, 922
BspCNI	CTCAG	2 cut(s)	168, 603
BspLI	GGNNCC	2 cut(s)	528, 696
BspPI	GGATC	2 cut(s)	138, 917
BsrDI	GCAATG	1 cut(s)	771
BsrGI	TGTACA	1 cut(s)	875
BssMI	GATC	3 cut(s)	130, 220, 922
BssSI	CACGAG	1 cut(s)	444
Bst2BI	CACGAG	1 cut(s)	444
Bst4CI	ACNGT	2 cut(s)	353, 776
Bst6I	CTCTTC	3 cut(s)	366, 573, 902
BstAUI	TGTACA	1 cut(s)	875
BstDEI	CTNAG	5 cut(s)	79, 121, 155, 226, 611
BstF5I	GGATG	6 cut(s)	25, 289, 319, 364, 618, 720
BstKTI	GATC	3 cut(s)	133, 223, 925
BstMAI	GTCTC	1 cut(s)	904
BstMBI	GATC	3 cut(s)	130, 220, 922
BstNSI	RCATGY	2 cut(s)	263, 459
BstV1I	GCAGC	1 cut(s)	758
BstV2I	GAAGAC	1 cut(s)	594
BstX2I	RGATCY	2 cut(s)	130, 922
BstYI	RGATCY	2 cut(s)	130, 922
BtsCI	GGATG	6 cut(s)	25, 289, 319, 364, 618, 720
BtsIMutI	CAGTG	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	694
Csp6I	GTAC	2 cut(s)	76, 876
CviAII	CATG	6 cut(s)	260, 456, 523, 623, 734, 990
CviJI	RGCY	7 cut(s)	44, 272, 329, 419, 664, 749, 814
CviKI_1	RGCY	7 cut(s)	44, 272, 329, 419, 664, 749, 814
CviQI	GTAC	2 cut(s)	76, 876
DdeI	CTNAG	5 cut(s)	79, 121, 155, 226, 611
DpnI	GATC	3 cut(s)	132, 222, 924
DpnII	GATC	3 cut(s)	130, 220, 922
Eam1104I	CTCTTC	3 cut(s)	366, 573, 902
EarI	CTCTTC	3 cut(s)	366, 573, 902
Eco47I	GGWCC	1 cut(s)	694
Eco57I	CTGAAG	2 cut(s)	345, 836
EcoO109I	RGGNCCY	1 cut(s)	694
EcoT22I	ATGCAT	2 cut(s)	261, 457
FaeI	CATG	6 cut(s)	263, 459, 526, 626, 737, 993
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FatI	CATG	6 cut(s)	259, 455, 522, 622, 733, 989
Fnu4HI	GCNGC	1 cut(s)	747
FokI	GGATG	6 cut(s)	32, 296, 306, 371, 605, 727
Fsp4HI	GCNGC	1 cut(s)	747
FspBI	CTAG	5 cut(s)	92, 269, 420, 665, 755
GluI	GCNGC	1 cut(s)	747
GsaI	CCCAGC	1 cut(s)	981
Hin1II	CATG	6 cut(s)	263, 459, 526, 626, 737, 993
HinfI	GANTC	2 cut(s)	95, 626
HphI	GGTGA	2 cut(s)	446, 482
Hpy166II	GTNNAC	2 cut(s)	76, 972
Hpy188I	TCNGA	5 cut(s)	631, 679, 743, 922, 964
Hpy188III	TCNNGA	3 cut(s)	323, 755, 904
Hpy8I	GTNNAC	2 cut(s)	76, 972
HpyAV	CCTTC	3 cut(s)	274, 685, 811
HpyCH4III	ACNGT	2 cut(s)	353, 776
HpyCH4V	TGCA	7 cut(s)	259, 455, 764, 772, 870, 916, 944
HpyF3I	CTNAG	5 cut(s)	79, 121, 155, 226, 611
Hsp92II	CATG	6 cut(s)	263, 459, 526, 626, 737, 993
Kzo9I	GATC	3 cut(s)	130, 220, 922
LmnI	GCTCC	2 cut(s)	106, 661
LpnPI	CCDG	6 cut(s)	66, 336, 543, 633, 948, 963
Lsp1109I	GCAGC	1 cut(s)	758
LweI	GCATC	1 cut(s)	627
MaeI	CTAG	5 cut(s)	92, 269, 420, 665, 755
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	3 cut(s)	132, 222, 924
MboI	GATC	3 cut(s)	130, 220, 922
MboII	GAAGA	7 cut(s)	245, 383, 590, 596, 599, 805, 919
MfeI	CAATTG	1 cut(s)	563
MflI	RGATCY	2 cut(s)	130, 922
MhlI	GDGCHC	1 cut(s)	445
MlyI	GAGTC	2 cut(s)	89, 620
MmeI	TCCRAC	1 cut(s)	814
MnlI	CCTC	8 cut(s)	54, 164, 301, 367, 574, 598, 796, 970
Mph1103I	ATGCAT	2 cut(s)	261, 457
MroXI	GAANNNNTTC	1 cut(s)	643
MseI	TTAA	4 cut(s)	11, 254, 672, 810
MslI	CAYNNNNRTG	2 cut(s)	228, 777
MunI	CAATTG	1 cut(s)	563
Mva1269I	GAATGC	1 cut(s)	841
NdeII	GATC	3 cut(s)	130, 220, 922
NlaIII	CATG	6 cut(s)	263, 459, 526, 626, 737, 993
NlaIV	GGNNCC	2 cut(s)	528, 696
NmuCI	GTSAC	1 cut(s)	199
NsiI	ATGCAT	2 cut(s)	261, 457
NspI	RCATGY	2 cut(s)	263, 459
PctI	GAATGC	1 cut(s)	841
PdmI	GAANNNNTTC	1 cut(s)	643
PkrI	GCNGC	1 cut(s)	748
PleI	GAGTC	2 cut(s)	89, 620
PpsI	GAGTC	2 cut(s)	89, 620
PpuMI	RGGWCCY	1 cut(s)	694
PsiI	TTATAA	1 cut(s)	861
Psp5II	RGGWCCY	1 cut(s)	694
PspFI	CCCAGC	1 cut(s)	977
PspN4I	GGNNCC	2 cut(s)	528, 696
PspPI	GGNCC	1 cut(s)	694
PspPPI	RGGWCCY	1 cut(s)	694
PsuI	RGATCY	2 cut(s)	130, 922
RsaI	GTAC	2 cut(s)	77, 877
RsaNI	GTAC	2 cut(s)	76, 876
RseI	CAYNNNNRTG	2 cut(s)	228, 777
SaqAI	TTAA	4 cut(s)	11, 254, 672, 810
SatI	GCNGC	1 cut(s)	747
Sau3AI	GATC	3 cut(s)	130, 220, 922
Sau96I	GGNCC	1 cut(s)	694
SchI	GAGTC	2 cut(s)	89, 620
SduI	GDGCHC	1 cut(s)	445
SetI	ASST	9 cut(s)	156, 274, 331, 378, 421, 532, 666, 816, 822
SfaNI	GCATC	1 cut(s)	627
SinI	GGWCC	1 cut(s)	694
SmiMI	CAYNNNNRTG	2 cut(s)	228, 777
SmlI	CTYRAG	1 cut(s)	850
SmoI	CTYRAG	1 cut(s)	850
SspI	AATATT	2 cut(s)	196, 499
SspMI	CTAG	5 cut(s)	92, 269, 420, 665, 755
TaaI	ACNGT	2 cut(s)	353, 776
TatI	WGTACW	2 cut(s)	75, 875
Tru1I	TTAA	4 cut(s)	11, 254, 672, 810
Tru9I	TTAA	4 cut(s)	11, 254, 672, 810
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	746
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	4 cut(s)	246, 384, 566, 704
TspRI	CASTG	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	694
XapI	RAATTY	2 cut(s)	301, 806
XbaI	TCTAGA	1 cut(s)	754
XceI	RCATGY	2 cut(s)	263, 459
XmnI	GAANNNNTTC	1 cut(s)	643
XspI	CTAG	5 cut(s)	92, 269, 420, 665, 755
Zsp2I	ATGCAT	2 cut(s)	261, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.