Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0013640

Physical Location & Seq

Genomic Coordinates Reverse (-)

19821587 .. 19822324

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTCTATGTGTGAGATTATTGCAATGGGAAAAGAATTAGGTCATCATGGCATAATAAATTATTGGTATAAGTTGCCTGGGATGGGAATTGGAGTTGCCATGACTTTGTTAAAAAGGGATGCTGATGTTGTTGATATGGTGGCTTTTGTGCCCGATGTGAGGATAATTGAAGTCTACCCGGAGCATGTACTAGACTCTCCTCCTTGTGATATTGCTAACTTAGGGTGGGACCTCCATGACTTTGGAATAGACCTCGCTCCCGGGAAAGATGGTGGAAGTGCTCGTGTCAATGCAGGTGTTAATGATTGTGAAACTAATTGTGGGAGTGATGCAAATGTTACAAATAATTTTAGTCATAGTATTGAAACTGGAAGTTGGGATATGGTGATGAATAATATTCAATTGGAAGATGTAGAAGAGGAAGAAGACCATCTTTCAAATGAGGAATTGAGAAGCGTCTATGACTCGATGATGAAAATAATTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

162

Amino Acids

17.9

Weight (kDa)

4.26

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013640)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21022 FvH4_4g33231
pyrus_communis	pycom16g21430 pycom16g26140
rosa_laevigata	RLG00000032953
rosa_multiflora	Rmu_sc0006269.1_g000023
rosa_roxburghii	Rroxscaffold_5G00358510 Rroxscaffold_6G00397970 Rroxscaffold_7G00172770
rosa_rugosa	Rorug02G0235100
rosa_samantha	Rh2CG306600 Rh2DG342900 Rh4AG104100 Rh4AG115200 Rh4CG112400 Rh5DG113200 Rh6CG362000
rosa_wichuraiana	Rw1G022480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	284
Acc36I	ACCTGC	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	2 cut(s)	83, 159
AgsI	TTSAA	4 cut(s)	170, 365, 401, 438
AjnI	CCWGG	1 cut(s)	76
Alw21I	GWGCWC	1 cut(s)	283
Ama87I	CYCGRG	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	229
AsuC2I	CCSGG	3 cut(s)	179, 261, 262
AsuHPI	GGTGA	1 cut(s)	397
AvaI	CYCGRG	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	229
BaeGI	GKGCMC	1 cut(s)	153
BauI	CACGAG	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	283
BccI	CCATC	3 cut(s)	76, 263, 438
BciT130I	CCWGG	1 cut(s)	78
BcnI	CCSGG	3 cut(s)	179, 261, 262
BfaI	CTAG	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	284
Bme1390I	CCNGG	4 cut(s)	78, 179, 261, 262
Bme18I	GGWCC	1 cut(s)	229
BmeT110I	CYCGRG	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	230
BmrFI	CCNGG	4 cut(s)	78, 179, 261, 262
BmsI	GCATC	2 cut(s)	109, 319
BpiI	GAAGAC	1 cut(s)	432
BpuMI	CCSGG	3 cut(s)	179, 261, 262
BsaJI	CCNNGG	2 cut(s)	77, 260
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 159
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	77, 260
BseGI	GGATG	2 cut(s)	87, 124
BseLI	CCNNNNNNNGG	2 cut(s)	83, 159
BseMI	GCAATG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	1 cut(s)	189
BseSI	GKGCMC	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	283
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	2 cut(s)	179, 261
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	83, 159
BsmFI	GGGAC	1 cut(s)	242
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	153, 283
BspLI	GGNNCC	1 cut(s)	230
BspMI	ACCTGC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	2 cut(s)	77, 260
BssSI	CACGAG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	78
Bst6I	CTCTTC	1 cut(s)	411
BstDEI	CTNAG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	87, 124
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	4 cut(s)	76, 177, 259, 260
BstSLI	GKGCMC	1 cut(s)	153
BstV2I	GAAGAC	1 cut(s)	432
BstXI	CCANNNNNNTGG	1 cut(s)	242
BtsCI	GGATG	2 cut(s)	87, 124
BveI	ACCTGC	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	229
Cfr9I	CCCGGG	1 cut(s)	260
CseI	GACGC	1 cut(s)	445
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	4 cut(s)	47, 100, 185, 236
CviJI	RGCY	1 cut(s)	143
CviKI_1	RGCY	1 cut(s)	143
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Eco47I	GGWCC	1 cut(s)	229
Eco88I	CYCGRG	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	76
FaeI	CATG	4 cut(s)	50, 103, 188, 239
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	4 cut(s)	46, 99, 184, 235
FblI	GTMKAC	1 cut(s)	174
FokI	GGATG	2 cut(s)	94, 131
FspBI	CTAG	1 cut(s)	191
HapII	CCGG	2 cut(s)	179, 261
HgaI	GACGC	1 cut(s)	445
Hin1II	CATG	4 cut(s)	50, 103, 188, 239
HinfI	GANTC	2 cut(s)	194, 464
HpaII	CCGG	2 cut(s)	179, 261
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	1 cut(s)	175
Hpy8I	GTNNAC	1 cut(s)	175
HpyCH4V	TGCA	3 cut(s)	23, 293, 332
HpyF3I	CTNAG	1 cut(s)	220
Hsp92II	CATG	4 cut(s)	50, 103, 188, 239
LmnI	GCTCC	2 cut(s)	181, 262
LpnPI	CCDG	6 cut(s)	63, 90, 192, 274, 279, 354
LweI	GCATC	2 cut(s)	109, 319
MaeI	CTAG	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	337
MboII	GAAGA	4 cut(s)	419, 428, 434, 437
MfeI	CAATTG	1 cut(s)	401
MhlI	GDGCHC	2 cut(s)	153, 283
MluCI	AATT	9 cut(s)	35, 58, 87, 165, 316, 346, 401, 446, 480
MlyI	GAGTC	2 cut(s)	188, 458
MnlI	CCTC	6 cut(s)	153, 210, 242, 263, 412, 436
MseI	TTAA	2 cut(s)	110, 300
MspI	CCGG	2 cut(s)	179, 261
MspR9I	CCNGG	4 cut(s)	78, 179, 261, 262
MunI	CAATTG	1 cut(s)	401
MvaI	CCWGG	1 cut(s)	78
NciI	CCSGG	3 cut(s)	179, 261, 262
NlaIII	CATG	4 cut(s)	50, 103, 188, 239
NlaIV	GGNNCC	1 cut(s)	230
NspI	RCATGY	1 cut(s)	188
PaqCI	CACCTGC	1 cut(s)	284
PleI	GAGTC	2 cut(s)	188, 458
PpsI	GAGTC	2 cut(s)	188, 458
PpuMI	RGGWCCY	1 cut(s)	229
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	230
PspPI	GGNCC	1 cut(s)	229
PspPPI	RGGWCCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SaqAI	TTAA	2 cut(s)	110, 300
Sau96I	GGNCC	1 cut(s)	229
SchI	GAGTC	2 cut(s)	188, 458
ScrFI	CCNGG	4 cut(s)	78, 179, 261, 262
SduI	GDGCHC	2 cut(s)	153, 283
SetI	ASST	4 cut(s)	43, 234, 255, 298
SfaNI	GCATC	2 cut(s)	109, 319
SinI	GGWCC	1 cut(s)	229
SmaI	CCCGGG	1 cut(s)	262
Sse9I	AATT	9 cut(s)	35, 58, 87, 165, 316, 346, 401, 446, 480
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	4 cut(s)	76, 177, 259, 260
TaqI	TCGA	1 cut(s)	467
TasI	AATT	9 cut(s)	35, 58, 87, 165, 316, 346, 401, 446, 480
TatI	WGTACW	1 cut(s)	187
Tru1I	TTAA	2 cut(s)	110, 300
Tru9I	TTAA	2 cut(s)	110, 300
TspDTI	ATGAA	2 cut(s)	404, 488
TspMI	CCCGGG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	229
XceI	RCATGY	1 cut(s)	188
XmaI	CCCGGG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.