RLG00000032953

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013640
Physical Location & Seq
Reverse (-)
21330849 .. 21332000
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032953

Sequence Viewer

Length: 1077 bp
ATGGAGATATTGCTCACTTTGACTACTATGACAAGGATAATATGTCTGTGTGAGATTATTGCAATGAGAAAAGAATTAGGTCATCATGGCATATTAAATTATTGGTATAAGTTGCCTGAGATGGGAATTGGAGCTGCCATGAGTCTGTTAAAAAGGGATGATGATGTTGTTGATATGGTGGCGTTTGTGCCAGATGTGAGGATGATTGAAGTGTACTTGGAGCATGTACTAGACTCTAGTCCTTGTGACATTGCAAAATTAGGTTGGGACCTCAATGACTTTGGAATAGACCTTAGTAAAAGTTCTGATGTGGGAGCTAGGAAGAGAAAAAGTATTGTGATTGAGGAGTTAGGGTTGGGTGAAGATGACAATGCTTATCATATAACACAGACTGAATTAGCTAATGACAAGGATGATAGTGATAATGACAATTCAGATGGAGACTATCATCCTGAAGCTGATTTTGTTGATAGTGATTACAGTGGGGATGATGATTCTGACGAAGTTGGTTATAATGATGGTACAGCAAGTAGTATTGATGATGAAGCTACCGCCAAAAATGGTGGAAATACTAGTGTCAATGCAGGTGTTAATGATGGTGAAACTAATTGTGGGAGTGATGCAAATGTTACAAATAATTTTAGTCATAATATGGAAATTGGAAGTTGGGATCTGGTGATGAATAGTATTCAATCGGAAGATGTAGAAGAGGAAGAAGATCATTTTTCAAATGAGGAATTAAGAAGCGTCCATGACTCTGATGATGAAAATAATTCTATGAGAAAAAGGGAGCCAGAAGCCGCCATTCGAGAGTATGCAATGTTGCACGATTACGAAATGAGATGGAAGAGGAATGAGGAATTTAAGTTGAAGGTTTTATGCAAAGGCAAATTCTGCCCTTGGCAAATTTATGCTGGAAAGAGTGCTTCTAATGATGATACATTACAGGTAAAAACATACGTTGGAGAGCATTCTTGCTCAAGGGTTTATGAAAACCGCACTTGTACAGCAGATTGGTTAGCTAAAAAGTTCAAGAAGAGACTGCAATCAGATCCCAACATGCCTCCGATGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

359

Amino Acids

40.41

Weight (kDa)

4.44

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 266 - 310 7.6e-06 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 513
AarI CACCTGC 1 cut(s) 575
Acc36I ACCTGC 1 cut(s) 575
AciI CCGC 3 cut(s) 552, 801, 997
AclWI GGATC 2 cut(s) 678, 1046
AcsI RAATTY 3 cut(s) 860, 890, 906
AcuI CTGAAG 1 cut(s) 474
AfaI GTAC 4 cut(s) 215, 228, 523, 1006
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 5 cut(s) 209, 692, 729, 871, 1033
AhlI ACTAGT 1 cut(s) 572
AluBI AGCT 6 cut(s) 134, 317, 401, 458, 548, 1022
AluI AGCT 6 cut(s) 134, 317, 401, 458, 548, 1022
Alw26I GTCTC 2 cut(s) 435, 1033
AlwI GGATC 2 cut(s) 678, 1046
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 3 cut(s) 860, 890, 906
AspS9I GGNCC 1 cut(s) 268
AsuHPI GGTGA 3 cut(s) 371, 611, 688
AvaII GGWCC 1 cut(s) 268
BbvI GCAGC 1 cut(s) 121
BccI CCATC 5 cut(s) 115, 431, 512, 590, 837
BcoDI GTCTC 2 cut(s) 435, 1033
BcuI ACTAGT 1 cut(s) 572
BfaI CTAG 4 cut(s) 230, 237, 318, 573
BfuAI ACCTGC 1 cut(s) 575
BisI GCNGC 2 cut(s) 135, 801
BlsI GCNGC 2 cut(s) 136, 802
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 2 cut(s) 269, 792
BmsI GCATC 2 cut(s) 610, 1059
BoxI GACNNNNGTC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 964
BsaJI CCNNGG 1 cut(s) 899
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse3DI GCAATG 3 cut(s) 69, 249, 825
BseDI CCNNGG 1 cut(s) 899
BseGI GGATG 5 cut(s) 163, 207, 418, 448, 493
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMI GCAATG 3 cut(s) 69, 249, 825
BseMII CTCAG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 359
BseXI GCAGC 1 cut(s) 121
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 2 cut(s) 435, 1033
BsmFI GGGAC 1 cut(s) 281
BsmI GAATGC 1 cut(s) 970
Bsp1407I TGTACA 1 cut(s) 1004
Bsp143I GATC 3 cut(s) 670, 718, 1051
BspACI CCGC 3 cut(s) 552, 801, 997
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 269, 792
BspMI ACCTGC 1 cut(s) 575
BspPI GGATC 2 cut(s) 678, 1046
BsrDI GCAATG 3 cut(s) 69, 249, 825
BsrGI TGTACA 1 cut(s) 1004
BssECI CCNNGG 1 cut(s) 899
BssMI GATC 3 cut(s) 670, 718, 1051
BssT1I CCWWGG 1 cut(s) 899
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 4 cut(s) 317, 702, 842, 1031
BstAPI GCANNNNNTGC 1 cut(s) 894
BstAUI TGTACA 1 cut(s) 1004
BstDEI CTNAG 2 cut(s) 117, 293
BstF5I GGATG 5 cut(s) 163, 207, 418, 448, 493
BstKTI GATC 3 cut(s) 673, 721, 1054
BstMAI GTCTC 2 cut(s) 435, 1033
BstMBI GATC 3 cut(s) 670, 718, 1051
BstMWI GCNNNNNNNGC 2 cut(s) 894, 1069
BstNSI RCATGY 2 cut(s) 227, 1063
BstPAI GACNNNNGTC 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 121
BstX2I RGATCY 2 cut(s) 670, 1051
BstYI RGATCY 2 cut(s) 670, 1051
BtsCI GGATG 5 cut(s) 163, 207, 418, 448, 493
BtsIMutI CAGTG 1 cut(s) 487
BveI ACCTGC 1 cut(s) 575
Cfr13I GGNCC 1 cut(s) 268
CseI GACGC 1 cut(s) 736
Csp6I GTAC 4 cut(s) 214, 227, 522, 1005
CspCI CAANNNNNGTGG 2 cut(s) 544, 579
CviAII CATG 5 cut(s) 86, 139, 224, 752, 1060
CviJI RGCY 8 cut(s) 134, 317, 401, 458, 548, 793, 800, 1022
CviKI_1 RGCY 8 cut(s) 134, 317, 401, 458, 548, 793, 800, 1022
CviQI GTAC 4 cut(s) 214, 227, 522, 1005
DdeI CTNAG 2 cut(s) 117, 293
DpnI GATC 3 cut(s) 672, 720, 1053
DpnII GATC 3 cut(s) 670, 718, 1051
Eam1104I CTCTTC 4 cut(s) 317, 702, 842, 1031
EarI CTCTTC 4 cut(s) 317, 702, 842, 1031
Eco130I CCWWGG 1 cut(s) 899
Eco47I GGWCC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 474
EcoO109I RGGNCCY 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 899
ErhI CCWWGG 1 cut(s) 899
FaeI CATG 5 cut(s) 89, 142, 227, 755, 1063
FaqI GGGAC 1 cut(s) 281
FatI CATG 5 cut(s) 85, 138, 223, 751, 1059
Fnu4HI GCNGC 2 cut(s) 135, 801
FokI GGATG 5 cut(s) 170, 214, 425, 435, 500
Fsp4HI GCNGC 2 cut(s) 135, 801
FspBI CTAG 4 cut(s) 230, 237, 318, 573
GluI GCNGC 2 cut(s) 135, 801
HgaI GACGC 1 cut(s) 736
Hin1II CATG 5 cut(s) 89, 142, 227, 755, 1063
HinfI GANTC 4 cut(s) 142, 233, 494, 755
HphI GGTGA 3 cut(s) 371, 611, 688
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 7 cut(s) 307, 436, 499, 697, 760, 1051, 1068
Hpy188III TCNNGA 3 cut(s) 452, 809, 1033
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 1 cut(s) 865
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4IV ACGT 1 cut(s) 960
HpyCH4V TGCA 9 cut(s) 62, 254, 584, 623, 818, 826, 882, 1045, 1072
HpyF10VI GCNNNNNNNGC 2 cut(s) 894, 1069
HpyF3I CTNAG 2 cut(s) 117, 293
HpySE526I ACGT 1 cut(s) 960
Hsp92II CATG 5 cut(s) 89, 142, 227, 755, 1063
Kzo9I GATC 3 cut(s) 670, 718, 1051
LmnI GCTCC 4 cut(s) 131, 220, 314, 790
LpnPI CCDG 8 cut(s) 129, 204, 465, 570, 659, 807, 900, 932
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 2 cut(s) 610, 1059
MaeI CTAG 4 cut(s) 230, 237, 318, 573
MaeII ACGT 1 cut(s) 960
MaeIII GTNAC 2 cut(s) 245, 628
MalI GATC 3 cut(s) 672, 720, 1053
MboI GATC 3 cut(s) 670, 718, 1051
MboII GAAGA 8 cut(s) 334, 374, 710, 719, 725, 728, 859, 1048
MflI RGATCY 2 cut(s) 670, 1051
MlyI GAGTC 3 cut(s) 151, 227, 749
MmeI TCCRAC 1 cut(s) 943
MnlI CCTC 8 cut(s) 192, 281, 337, 703, 727, 843, 850, 1074
MseI TTAA 5 cut(s) 95, 149, 591, 740, 864
Mva1269I GAATGC 1 cut(s) 970
MwoI GCNNNNNNNGC 2 cut(s) 894, 1069
NdeII GATC 3 cut(s) 670, 718, 1051
NlaIII CATG 5 cut(s) 89, 142, 227, 755, 1063
NlaIV GGNNCC 2 cut(s) 269, 792
NmuCI GTSAC 1 cut(s) 245
NspI RCATGY 2 cut(s) 227, 1063
PaqCI CACCTGC 1 cut(s) 575
PctI GAATGC 1 cut(s) 970
PfeI GAWTC 1 cut(s) 494
PkrI GCNGC 2 cut(s) 136, 802
PleI GAGTC 3 cut(s) 150, 227, 749
PpsI GAGTC 3 cut(s) 150, 227, 749
PpuMI RGGWCCY 1 cut(s) 268
PshAI GACNNNNGTC 1 cut(s) 237
PsiI TTATAA 1 cut(s) 513
Psp5II RGGWCCY 1 cut(s) 268
PspN4I GGNNCC 2 cut(s) 269, 792
PspPI GGNCC 1 cut(s) 268
PspPPI RGGWCCY 1 cut(s) 268
PsuI RGATCY 2 cut(s) 670, 1051
RsaI GTAC 4 cut(s) 215, 228, 523, 1006
RsaNI GTAC 4 cut(s) 214, 227, 522, 1005
SaqAI TTAA 5 cut(s) 95, 149, 591, 740, 864
SatI GCNGC 2 cut(s) 135, 801
Sau3AI GATC 3 cut(s) 670, 718, 1051
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 3 cut(s) 151, 227, 749
SfaNI GCATC 2 cut(s) 610, 1059
SinI GGWCC 1 cut(s) 268
SmlI CTYRAG 1 cut(s) 979
SmoI CTYRAG 1 cut(s) 979
SpeI ACTAGT 1 cut(s) 572
SsiI CCGC 3 cut(s) 552, 801, 997
SspMI CTAG 4 cut(s) 230, 237, 318, 573
StyI CCWWGG 1 cut(s) 899
TaaI ACNGT 1 cut(s) 482
TaiI ACGT 1 cut(s) 963
TaqI TCGA 1 cut(s) 808
TatI WGTACW 3 cut(s) 213, 226, 1004
TauI GCSGC 1 cut(s) 803
TfiI GAWTC 1 cut(s) 494
Tru1I TTAA 5 cut(s) 95, 149, 591, 740, 864
Tru9I TTAA 5 cut(s) 95, 149, 591, 740, 864
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 4 cut(s) 558, 695, 780, 1005
TspRI CASTG 1 cut(s) 487
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 3 cut(s) 860, 890, 906
XceI RCATGY 2 cut(s) 227, 1063
XspI CTAG 4 cut(s) 230, 237, 318, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.