Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0013640

Physical Location & Seq

Genomic Coordinates Reverse (-)

21190843 .. 21203233

Gene Structure 12391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG112400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGTATCACAATGGTGGTATGCTACCGCTGTGCTATGTAAATGGGGATATTGCTCACTTTGACTGTTGTGACAAGGATAATATGTCTATGTGTGAGATTATCGCAATGGGAAAAGAATTAGGTCATCATGGCATAATAAATTATTGGTATAAGTTGCCTGGGATGGGAATTGGAGCTGCCATGACTTTGTTAAAGAGGGATGCTGATGTTGTTGATATGGTGGCTTTTGTGCCAGATGTGAGGATAATTGCAGTCTACTTGGAGCATGTACTAGACTCTCCTCCTTGTGATATTGCTAACTTAGGGTGGGACCTCCATGACTTTGGAATAGACCTCAGTAAAAGTTCTGATGTGGGAGCTAGGAAGAGAAAAAGTATTGAGATTGAAGAGTCAGGGTTAGATGAAGATGACAATGCTTATGATATAATGCAGACTGAATTAGCTGATAATACAGATGACAATAATAATGACATTTCAGATGGAGATTATGATCCTGAAGTTGATTTTGTTGATAGTGATTACAGTGGGGATGACGATTCGGACGAGGTTGGTTATAATGATGGGATAGCAAGTAGTGTTGATGCTGAAGCTCCTGGGAAAGAGGGTGGAAGTGCTCGTGTCAATATAGGTGTTAATGATGGTGAAACTAATTGCAGGAGTGATGCAAATGTTACAGATAATTTTAGTCATATTATTGAAACTGGAAGTTGGGATATGGTGATGAATAATATTCAATTGGAAGATGTAGAAGAGGAAGAAGACCATCTTTCAAATGAGGAATTGAGAAGCATGTATGAATTTGATGATGAAAATAATTCTATGAGAAAAAGGGAGCCAGAGTTTAACCCTGAAACTGATATGAAGGACCCTAAATTTGAGTTAGGGATGTTGTTTAGTGATTGTCATGTTTTTAGAGCAGCCATTCGAGAGTATGCAATGTTGCATGGCTACGAGATGAGATGGAAAAGGAATGAGGAATTTAAGTTGAAGGTTTTATGCAAAGGCAAGTTCTGCCCATGGCAAATTTATGCTGGAAAGAGAGCTTCTAATGATGACACATTGCAGTTACAACCAATAACAACTGCAGTACCTCCATCTACATCTGCACCACCTTCCTCAACTTCTACAAGAATAGCTCCACCAACACCATCCACTACTCTAGCACCTCCGCAATGTAATCTTGGTAGGAAATCATCAAAGGCCTCTACGCAGGCAAGCCAAACATCGACAGCTCGTACATCTAATGCTGGGAAAAGAGGAAGACCACCAAAGAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

426

Amino Acids

47.23

Weight (kDa)

4.49

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1-like	PF26130	9 - 89	5.3e-11	PB1-like domain
DBD_Tnp_Mut	PF03108	291 - 349	2.1e-09	MuDR family transposase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013640)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21022 FvH4_4g33231
pyrus_communis	pycom16g21430 pycom16g26140
rosa_laevigata	RLG00000032953
rosa_multiflora	Rmu_sc0006269.1_g000023
rosa_roxburghii	Rroxscaffold_5G00358510 Rroxscaffold_6G00397970 Rroxscaffold_7G00172770
rosa_rugosa	Rorug02G0235100
rosa_samantha	Rh2CG306600 Rh2DG342900 Rh4AG104100 Rh4AG115200 Rh4CG112400 Rh5DG113200 Rh6CG362000
rosa_wichuraiana	Rw1G022480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	2 cut(s)	26, 1169
AclWI	GGATC	1 cut(s)	485
AcsI	RAATTY	4 cut(s)	797, 872, 977, 1023
AcuI	CTGAAG	2 cut(s)	516, 606
AfaI	GTAC	3 cut(s)	270, 1089, 1237
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	5 cut(s)	386, 698, 734, 771, 988
AjnI	CCWGG	2 cut(s)	157, 592
AleI	CACNNNNGTG	1 cut(s)	12
AluBI	AGCT	7 cut(s)	176, 359, 443, 590, 1043, 1136, 1232
AluI	AGCT	7 cut(s)	176, 359, 443, 590, 1043, 1136, 1232
Alw21I	GWGCWC	1 cut(s)	616
AlwI	GGATC	1 cut(s)	485
AoxI	GGCC	1 cut(s)	1200
ApeKI	GCWGC	2 cut(s)	176, 917
ApoI	RAATTY	4 cut(s)	797, 872, 977, 1023
ArsI	GACNNNNNNTTYG	2 cut(s)	857, 889
AspS9I	GGNCC	2 cut(s)	310, 865
AsuHPI	GGTGA	2 cut(s)	653, 730
AvaII	GGWCC	2 cut(s)	310, 865
BaeI	ACNNNNGTAYC	2 cut(s)	1071, 1104
BauI	CACGAG	1 cut(s)	615
BbsI	GAAGAC	2 cut(s)	765, 1267
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	2 cut(s)	163, 929
BccI	CCATC	8 cut(s)	157, 473, 554, 632, 771, 954, 1102, 1156
BciT130I	CCWGG	2 cut(s)	159, 594
BfaI	CTAG	3 cut(s)	272, 360, 1160
BfmI	CTRYAG	1 cut(s)	1083
BisI	GCNGC	2 cut(s)	177, 918
BlsI	GCNGC	2 cut(s)	178, 919
Bme1390I	CCNGG	2 cut(s)	159, 594
Bme18I	GGWCC	2 cut(s)	310, 865
BmgT120I	GGNCC	2 cut(s)	310, 865
BmiI	GGNNCC	3 cut(s)	311, 834, 867
BmrFI	CCNGG	2 cut(s)	159, 594
BmsI	GCATC	3 cut(s)	190, 571, 652
BpiI	GAAGAC	2 cut(s)	765, 1267
BsaBI	GATNNNNATC	1 cut(s)	489
BsaJI	CCNNGG	3 cut(s)	158, 593, 1016
BsaXI	ACNNNNNCTCC	2 cut(s)	824, 854
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	706
Bse3DI	GCAATG	4 cut(s)	111, 942, 1058, 1178
Bse8I	GATNNNNATC	1 cut(s)	489
BseBI	CCWGG	2 cut(s)	159, 594
BseDI	CCNNGG	3 cut(s)	158, 593, 1016
BseGI	GGATG	5 cut(s)	168, 205, 535, 891, 1148
BseJI	GATNNNNATC	1 cut(s)	489
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMI	GCAATG	4 cut(s)	111, 942, 1058, 1178
BseMII	CTCAG	1 cut(s)	349
BseNI	ACTGG	1 cut(s)	706
BseRI	GAGGAG	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	163, 929
BseYI	CCCAGC	1 cut(s)	1247
BsgI	GTGCAG	1 cut(s)	1089
BshFI	GGCC	1 cut(s)	1202
BsiHKAI	GWGCWC	1 cut(s)	616
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	1 cut(s)	1202
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	1 cut(s)	490
Bsp19I	CCATGG	1 cut(s)	1016
BspACI	CCGC	2 cut(s)	26, 1169
BspANI	GGCC	1 cut(s)	1202
BspCNI	CTCAG	1 cut(s)	348
BspLI	GGNNCC	3 cut(s)	311, 834, 867
BspMAI	CTGCAG	1 cut(s)	1087
BspPI	GGATC	1 cut(s)	485
BsrDI	GCAATG	4 cut(s)	111, 942, 1058, 1178
BsrI	ACTGG	1 cut(s)	706
BssECI	CCNNGG	3 cut(s)	158, 593, 1016
BssMI	GATC	1 cut(s)	490
BssSI	CACGAG	1 cut(s)	615
BssT1I	CCWWGG	1 cut(s)	1016
Bst2BI	CACGAG	1 cut(s)	615
Bst2UI	CCWGG	2 cut(s)	159, 594
Bst4CI	ACNGT	2 cut(s)	65, 524
Bst6I	CTCTTC	3 cut(s)	359, 381, 744
BstAPI	GCANNNNNTGC	1 cut(s)	1011
BstC8I	GCNNGC	2 cut(s)	1212, 1216
BstDEI	CTNAG	2 cut(s)	301, 335
BstDSI	CCRYGG	1 cut(s)	1016
BstF5I	GGATG	5 cut(s)	168, 205, 535, 891, 1148
BstKTI	GATC	1 cut(s)	493
BstMBI	GATC	1 cut(s)	490
BstMWI	GCNNNNNNNGC	1 cut(s)	1011
BstNI	CCWGG	2 cut(s)	159, 594
BstNSI	RCATGY	2 cut(s)	269, 793
BstSCI	CCNGG	2 cut(s)	157, 592
BstSFI	CTRYAG	1 cut(s)	1083
BstV1I	GCAGC	2 cut(s)	163, 929
BstV2I	GAAGAC	2 cut(s)	765, 1267
BstXI	CCANNNNNNTGG	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	1202
BtgI	CCRYGG	1 cut(s)	1016
BtsCI	GGATG	5 cut(s)	168, 205, 535, 891, 1148
BtsIMutI	CAGTG	1 cut(s)	529
Cac8I	GCNNGC	2 cut(s)	1212, 1216
Cfr13I	GGNCC	2 cut(s)	310, 865
Csp6I	GTAC	3 cut(s)	269, 1088, 1236
CviAII	CATG	8 cut(s)	128, 181, 266, 317, 790, 905, 944, 1017
CviQI	GTAC	3 cut(s)	269, 1088, 1236
DdeI	CTNAG	2 cut(s)	301, 335
DpnI	GATC	1 cut(s)	492
DpnII	GATC	1 cut(s)	490
Eam1104I	CTCTTC	3 cut(s)	359, 381, 744
EarI	CTCTTC	3 cut(s)	359, 381, 744
Eco130I	CCWWGG	1 cut(s)	1016
Eco147I	AGGCCT	1 cut(s)	1202
Eco47I	GGWCC	2 cut(s)	310, 865
Eco57I	CTGAAG	2 cut(s)	516, 606
EcoO109I	RGGNCCY	2 cut(s)	310, 865
EcoRII	CCWGG	2 cut(s)	157, 592
EcoT14I	CCWWGG	1 cut(s)	1016
ErhI	CCWWGG	1 cut(s)	1016
FaeI	CATG	8 cut(s)	131, 184, 269, 320, 793, 908, 947, 1020
FalI	AAGNNNNNCTT	2 cut(s)	750, 782
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	8 cut(s)	127, 180, 265, 316, 789, 904, 943, 1016
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	177, 918
FokI	GGATG	5 cut(s)	175, 212, 542, 898, 1135
Fsp4HI	GCNGC	2 cut(s)	177, 918
FspBI	CTAG	3 cut(s)	272, 360, 1160
GluI	GCNGC	2 cut(s)	177, 918
GsaI	CCCAGC	1 cut(s)	1251
HaeIII	GGCC	1 cut(s)	1202
Hin1II	CATG	8 cut(s)	131, 184, 269, 320, 793, 908, 947, 1020
HinfI	GANTC	3 cut(s)	275, 389, 536
HphI	GGTGA	2 cut(s)	653, 730
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	349, 478, 541
Hpy188III	TCNNGA	2 cut(s)	494, 926
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	4 cut(s)	856, 982, 1122, 1267
HpyCH4III	ACNGT	2 cut(s)	65, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1011
HpyF3I	CTNAG	2 cut(s)	301, 335
Hsp92II	CATG	8 cut(s)	131, 184, 269, 320, 793, 908, 947, 1020
Kzo9I	GATC	1 cut(s)	490
LmnI	GCTCC	6 cut(s)	173, 262, 356, 595, 832, 1141
Lsp1109I	GCAGC	2 cut(s)	163, 929
LweI	GCATC	3 cut(s)	190, 571, 652
MaeI	CTAG	3 cut(s)	272, 360, 1160
MaeIII	GTNAC	3 cut(s)	68, 670, 1065
MalI	GATC	1 cut(s)	492
MboI	GATC	1 cut(s)	490
MboII	GAAGA	8 cut(s)	376, 398, 416, 752, 761, 767, 770, 1272
MfeI	CAATTG	1 cut(s)	734
MhlI	GDGCHC	1 cut(s)	616
MlyI	GAGTC	2 cut(s)	269, 398
MseI	TTAA	4 cut(s)	191, 633, 843, 981
MslI	CAYNNNNRTG	1 cut(s)	12
MspA1I	CMGCKG	1 cut(s)	28
MspR9I	CCNGG	2 cut(s)	159, 594
MunI	CAATTG	1 cut(s)	734
MvaI	CCWGG	2 cut(s)	159, 594
MwoI	GCNNNNNNNGC	1 cut(s)	1011
NcoI	CCATGG	1 cut(s)	1016
NdeII	GATC	1 cut(s)	490
NlaIII	CATG	8 cut(s)	131, 184, 269, 320, 793, 908, 947, 1020
NlaIV	GGNNCC	3 cut(s)	311, 834, 867
NmuCI	GTSAC	1 cut(s)	68
NspI	RCATGY	2 cut(s)	269, 793
OliI	CACNNNNGTG	1 cut(s)	12
PceI	AGGCCT	1 cut(s)	1202
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	536
PkrI	GCNGC	2 cut(s)	178, 919
PleI	GAGTC	2 cut(s)	269, 397
PpsI	GAGTC	2 cut(s)	269, 397
PpuMI	RGGWCCY	2 cut(s)	310, 865
PsiI	TTATAA	1 cut(s)	555
Psp5II	RGGWCCY	2 cut(s)	310, 865
Psp6I	CCWGG	2 cut(s)	157, 592
PspFI	CCCAGC	1 cut(s)	1247
PspGI	CCWGG	2 cut(s)	157, 592
PspN4I	GGNNCC	3 cut(s)	311, 834, 867
PspPI	GGNCC	2 cut(s)	310, 865
PspPPI	RGGWCCY	2 cut(s)	310, 865
PstI	CTGCAG	1 cut(s)	1087
RsaI	GTAC	3 cut(s)	270, 1089, 1237
RsaNI	GTAC	3 cut(s)	269, 1088, 1236
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	4 cut(s)	191, 633, 843, 981
SatI	GCNGC	2 cut(s)	177, 918
Sau3AI	GATC	1 cut(s)	490
Sau96I	GGNCC	2 cut(s)	310, 865
SchI	GAGTC	2 cut(s)	269, 398
ScrFI	CCNGG	2 cut(s)	159, 594
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	3 cut(s)	190, 571, 652
SfcI	CTRYAG	1 cut(s)	1083
SinI	GGWCC	2 cut(s)	310, 865
SmiMI	CAYNNNNRTG	1 cut(s)	12
SseBI	AGGCCT	1 cut(s)	1202
SsiI	CCGC	2 cut(s)	26, 1169
SspI	AATATT	1 cut(s)	730
SspMI	CTAG	3 cut(s)	272, 360, 1160
StuI	AGGCCT	1 cut(s)	1202
StyD4I	CCNGG	2 cut(s)	157, 592
StyI	CCWWGG	1 cut(s)	1016
TaaI	ACNGT	2 cut(s)	65, 524
TaqI	TCGA	2 cut(s)	925, 1226
TatI	WGTACW	1 cut(s)	268
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	4 cut(s)	191, 633, 843, 981
Tru9I	TTAA	4 cut(s)	191, 633, 843, 981
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	2 cut(s)	176, 917
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	5 cut(s)	417, 737, 810, 822, 875
TspRI	CASTG	1 cut(s)	529
VpaK11BI	GGWCC	2 cut(s)	310, 865
XapI	RAATTY	4 cut(s)	797, 872, 977, 1023
XceI	RCATGY	2 cut(s)	269, 793
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	3 cut(s)	272, 360, 1160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.