Rh4AG104100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0013640
Physical Location & Seq
Reverse (-)
22244209 .. 22287125
42917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG104100.1

Sequence Viewer

Length: 792 bp
ATGATTGATCCAAATAAATTCACAATTAGAATGTATCACAATGGTGGTATGCTACCGCTGTGCTATGTAAATGGGGATATTGCTCACTTTGACTGTTGTGACAAGGATAATATGTCTATGTGTGAGATTATCGCAATGGGAAAAGAATTAGGTCATCATGGCATAATAAATTATTGGTATAAGTTGCCTGGGATGGGAATTGGAGCTGCCATGACTTTGTTAAAGAGGGATGCTGATGTTGTTGATATGGTGGCTTTTGTGCCAGATGTGAGGATAATTGCAGTCTACTTGGAGCATGTACTAGACTCTCCTCCTTGTGATATTGCTAACTTAGGGTGGGACCTCCATGACTTTGGAATAGACCTCAGTAAAAGTTCTGATGTGGGAGCTAGGAAGAGAAAAAGTATTGAGATTGAAGAGTCAGGGTTAGATGAAGATGACAATGCTTATGATATAATGCAGACTGAATTAGCTGATAATACAGATGACAATAATAATGACATTTCAGATGGAGATTATGATCCTGAAGTTGATTTTGTTGATAGTGATTACAGTGGGGATGACGATTCGGACGAGTTACAACCAATAACAACTGCAGTACCTCCATCTACATCTGCACCACCTTCCTCAACTTCTACAAGAATAGCTCCACCAACACCATCCACTACTCTAGCACCTCCGCAATGTAATCTTGGTAGGAAATCATCAAAGGCCTCTACGCAGGCAAGCCAAACATCGACAGCTCGTACATCTAATGCTGGGAAAAGAGGAAGACCACCAAAGAAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

263

Amino Acids

28.58

Weight (kDa)

4.47

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 6 - 99 2.6e-12 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 285
AciI CCGC 2 cut(s) 56, 680
AclWI GGATC 2 cut(s) 2, 515
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 3 cut(s) 300, 600, 748
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 416
AjnI CCWGG 1 cut(s) 187
AleI CACNNNNGTG 1 cut(s) 42
AluBI AGCT 5 cut(s) 206, 389, 473, 647, 743
AluI AGCT 5 cut(s) 206, 389, 473, 647, 743
AlwI GGATC 2 cut(s) 2, 515
AoxI GGCC 1 cut(s) 711
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 340
AvaII GGWCC 1 cut(s) 340
BaeI ACNNNNGTAYC 2 cut(s) 582, 615
BbsI GAAGAC 1 cut(s) 778
BbvI GCAGC 1 cut(s) 193
BccI CCATC 4 cut(s) 187, 503, 613, 667
BciT130I CCWGG 1 cut(s) 189
BfaI CTAG 3 cut(s) 302, 390, 671
BfmI CTRYAG 1 cut(s) 594
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 1 cut(s) 341
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 778
BsaBI GATNNNNATC 1 cut(s) 519
BsaJI CCNNGG 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse3DI GCAATG 2 cut(s) 141, 689
Bse8I GATNNNNATC 1 cut(s) 519
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 4 cut(s) 198, 235, 565, 659
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMI GCAATG 2 cut(s) 141, 689
BseMII CTCAG 1 cut(s) 379
BseRI GAGGAG 1 cut(s) 300
BseXI GCAGC 1 cut(s) 193
BseYI CCCAGC 1 cut(s) 758
BsgI GTGCAG 1 cut(s) 600
BshFI GGCC 1 cut(s) 713
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 1 cut(s) 713
Bsp143I GATC 2 cut(s) 7, 520
BspACI CCGC 2 cut(s) 56, 680
BspANI GGCC 1 cut(s) 713
BspCNI CTCAG 1 cut(s) 378
BspLI GGNNCC 1 cut(s) 341
BspMAI CTGCAG 1 cut(s) 598
BspPI GGATC 2 cut(s) 2, 515
BsrDI GCAATG 2 cut(s) 141, 689
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 2 cut(s) 7, 520
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 95, 554
Bst6I CTCTTC 2 cut(s) 389, 411
BstC8I GCNNGC 2 cut(s) 723, 727
BstDEI CTNAG 2 cut(s) 331, 365
BstF5I GGATG 4 cut(s) 198, 235, 565, 659
BstKTI GATC 2 cut(s) 10, 523
BstMBI GATC 2 cut(s) 7, 520
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 187
BstSFI CTRYAG 1 cut(s) 594
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 778
BstXI CCANNNNNNTGG 1 cut(s) 353
BsuRI GGCC 1 cut(s) 713
BtsCI GGATG 4 cut(s) 198, 235, 565, 659
BtsIMutI CAGTG 1 cut(s) 559
Cac8I GCNNGC 2 cut(s) 723, 727
Cfr13I GGNCC 1 cut(s) 340
Csp6I GTAC 3 cut(s) 299, 599, 747
CviAII CATG 4 cut(s) 158, 211, 296, 347
CviJI RGCY 8 cut(s) 206, 254, 389, 473, 647, 713, 729, 743
CviKI_1 RGCY 8 cut(s) 206, 254, 389, 473, 647, 713, 729, 743
CviQI GTAC 3 cut(s) 299, 599, 747
DdeI CTNAG 2 cut(s) 331, 365
DpnI GATC 2 cut(s) 9, 522
DpnII GATC 2 cut(s) 7, 520
Eam1104I CTCTTC 2 cut(s) 389, 411
EarI CTCTTC 2 cut(s) 389, 411
Eco147I AGGCCT 1 cut(s) 713
Eco47I GGWCC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 546
EcoO109I RGGNCCY 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 187
FaeI CATG 4 cut(s) 161, 214, 299, 350
FaqI GGGAC 1 cut(s) 353
FatI CATG 4 cut(s) 157, 210, 295, 346
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 4 cut(s) 205, 242, 572, 646
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 3 cut(s) 302, 390, 671
GluI GCNGC 1 cut(s) 207
GsaI CCCAGC 1 cut(s) 762
HaeIII GGCC 1 cut(s) 713
Hin1II CATG 4 cut(s) 161, 214, 299, 350
HinfI GANTC 3 cut(s) 305, 419, 566
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 3 cut(s) 379, 508, 571
Hpy188III TCNNGA 1 cut(s) 524
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 633, 778
HpyCH4III ACNGT 2 cut(s) 95, 554
HpyCH4V TGCA 4 cut(s) 281, 460, 596, 617
HpyF3I CTNAG 2 cut(s) 331, 365
Hsp92II CATG 4 cut(s) 161, 214, 299, 350
Kzo9I GATC 2 cut(s) 7, 520
LmnI GCTCC 4 cut(s) 203, 292, 386, 652
LpnPI CCDG 7 cut(s) 174, 201, 276, 408, 537, 707, 744
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 220
MaeI CTAG 3 cut(s) 302, 390, 671
MaeIII GTNAC 2 cut(s) 98, 576
MalI GATC 2 cut(s) 9, 522
MboI GATC 2 cut(s) 7, 520
MboII GAAGA 4 cut(s) 406, 428, 446, 783
MluCI AATT 7 cut(s) 17, 24, 146, 169, 198, 276, 467
MlyI GAGTC 2 cut(s) 299, 428
MseI TTAA 1 cut(s) 221
MslI CAYNNNNRTG 1 cut(s) 42
MspA1I CMGCKG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
NdeII GATC 2 cut(s) 7, 520
NlaIII CATG 4 cut(s) 161, 214, 299, 350
NlaIV GGNNCC 1 cut(s) 341
NmuCI GTSAC 1 cut(s) 98
NspI RCATGY 1 cut(s) 299
OliI CACNNNNGTG 1 cut(s) 42
PceI AGGCCT 1 cut(s) 713
PcsI WCGNNNNNNNCGW 1 cut(s) 570
PfeI GAWTC 1 cut(s) 566
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 2 cut(s) 299, 427
PpsI GAGTC 2 cut(s) 299, 427
PpuMI RGGWCCY 1 cut(s) 340
Psp5II RGGWCCY 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 758
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 341
PspPI GGNCC 1 cut(s) 340
PspPPI RGGWCCY 1 cut(s) 340
PstI CTGCAG 1 cut(s) 598
RsaI GTAC 3 cut(s) 300, 600, 748
RsaNI GTAC 3 cut(s) 299, 599, 747
RseI CAYNNNNRTG 1 cut(s) 42
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 2 cut(s) 7, 520
Sau96I GGNCC 1 cut(s) 340
SchI GAGTC 2 cut(s) 299, 428
ScrFI CCNGG 1 cut(s) 189
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 1 cut(s) 594
SinI GGWCC 1 cut(s) 340
SmiMI CAYNNNNRTG 1 cut(s) 42
Sse9I AATT 7 cut(s) 17, 24, 146, 169, 198, 276, 467
SseBI AGGCCT 1 cut(s) 713
SsiI CCGC 2 cut(s) 56, 680
SspMI CTAG 3 cut(s) 302, 390, 671
StuI AGGCCT 1 cut(s) 713
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 2 cut(s) 95, 554
TaqI TCGA 1 cut(s) 737
TasI AATT 7 cut(s) 17, 24, 146, 169, 198, 276, 467
TatI WGTACW 1 cut(s) 298
TfiI GAWTC 1 cut(s) 566
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TscAI CASTG 1 cut(s) 559
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 447
TspRI CASTG 1 cut(s) 559
VpaK11BI GGWCC 1 cut(s) 340
XapI RAATTY 1 cut(s) 17
XceI RCATGY 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 285
XspI CTAG 3 cut(s) 302, 390, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.