Rh2CG306600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013640
Physical Location & Seq
Reverse (-)
36634792 .. 36638052
3261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG306600.1

Sequence Viewer

Length: 933 bp
ATGTATCACAATGGTGGTATGCTACCGCTGTGCTATGTAACTAGGGATATTGCTCACTTTGACTATTGTGACAAGGATAATATGTCTATGTGTGAGATTATGGCAATGGGAAAAGAATTAGGTCATCATGGCATAATAAATTATTGGTATAAGTTTCCTGGGATGGGAATTGGAGCTGCCATGACTTTATTAAAAAGGGATGCTGATGTTGTTGATATGGTGGCTTTTGTGCCAGATGTGAGGATAATTCCAGTTTACTTGGAGCATGTACTAGACTCTCCTCCTTGTGATATTGCTAACTTAGGGTGGGACCTCCATGACTTTGGAATAGACCTCAGTAAAAGTTCTTATGTGGGAGCTAGGAAGAGAAAAAGTATTGAGATTGAAGAGTCAGGGTTAGATGAAGATGACAATGCTTATGATATAATGCAGACTGAATTAGCTGATAATACAGATGACAATAATAATAACATTTCAGATAGAGATTATGATCCTGAAGTTGATTTTGTTGATAGTGATTACAGTGGGGATGACGATTCGGACGAGGTTGGTTATAATGATGGGATAGCAAGTAGTGTTGATGCTGAAGCTCCTAGGAAAGATGGTGGAAGTGCTCGTGTCAATGTAGGTGTTAATGATGGTGAAACTAATTGCGGGAGTGATGCAAATGTTACAGATAATTTTAGTCATATTATTGAAACTGGAAGTTGGGATATGTTACAACCAATAACAACTTCAGTACCTCCATCTACATCTGCACCACCTTCCTCAACTTCTACAAGAATAGCTCCACCAACACCATCCACTACTCTAGCACCTCCGCAATGTAATCTTGGTAGGAAATCATCAAAGGCCTCTACGCAGGCAAGCCAAACATCGACAGCTCGTACATCTAATGCTGGGAAAAGAGGAAGACCACCAAAGAAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

310

Amino Acids

33.6

Weight (kDa)

4.45

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1-like PF26130 9 - 88 3.8e-10 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 555
AciI CCGC 3 cut(s) 26, 654, 821
AclWI GGATC 1 cut(s) 485
AcuI CTGAAG 3 cut(s) 516, 606, 720
AfaI GTAC 3 cut(s) 270, 741, 889
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 2 cut(s) 386, 698
AjnI CCWGG 1 cut(s) 157
AjuI GAANNNNNNNTTGG 2 cut(s) 718, 750
AleI CACNNNNGTG 1 cut(s) 12
AluBI AGCT 6 cut(s) 176, 359, 443, 590, 788, 884
AluI AGCT 6 cut(s) 176, 359, 443, 590, 788, 884
Alw21I GWGCWC 1 cut(s) 616
AlwI GGATC 1 cut(s) 485
AoxI GGCC 1 cut(s) 852
ApeKI GCWGC 1 cut(s) 176
AspA2I CCTAGG 1 cut(s) 593
AspS9I GGNCC 1 cut(s) 310
AsuHPI GGTGA 1 cut(s) 653
AvaII GGWCC 1 cut(s) 310
AvrII CCTAGG 1 cut(s) 593
BaeI ACNNNNGTAYC 2 cut(s) 723, 756
BauI CACGAG 1 cut(s) 615
BbsI GAAGAC 1 cut(s) 919
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 1 cut(s) 163
BccI CCATC 6 cut(s) 157, 554, 596, 632, 754, 808
BciT130I CCWGG 1 cut(s) 159
BfaI CTAG 5 cut(s) 42, 272, 360, 594, 812
BisI GCNGC 1 cut(s) 177
BlnI CCTAGG 1 cut(s) 593
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 159
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 311
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 3 cut(s) 190, 571, 652
BpiI GAAGAC 1 cut(s) 919
BsaBI GATNNNNATC 1 cut(s) 489
BsaJI CCNNGG 2 cut(s) 158, 593
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 2 cut(s) 251, 706
Bse3DI GCAATG 2 cut(s) 111, 830
Bse8I GATNNNNATC 1 cut(s) 489
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 158, 593
BseGI GGATG 4 cut(s) 168, 205, 535, 800
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMI GCAATG 2 cut(s) 111, 830
BseMII CTCAG 1 cut(s) 349
BseNI ACTGG 2 cut(s) 251, 706
BseRI GAGGAG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 163
BseYI CCCAGC 1 cut(s) 899
BsgI GTGCAG 1 cut(s) 741
BshFI GGCC 1 cut(s) 854
BsiHKAI GWGCWC 1 cut(s) 616
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 1 cut(s) 854
Bsp1286I GDGCHC 1 cut(s) 616
Bsp143I GATC 1 cut(s) 490
BspACI CCGC 3 cut(s) 26, 654, 821
BspANI GGCC 1 cut(s) 854
BspCNI CTCAG 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 311
BspPI GGATC 1 cut(s) 485
BsrDI GCAATG 2 cut(s) 111, 830
BsrI ACTGG 2 cut(s) 251, 706
BssECI CCNNGG 2 cut(s) 158, 593
BssMI GATC 1 cut(s) 490
BssSI CACGAG 1 cut(s) 615
BssT1I CCWWGG 1 cut(s) 593
Bst2BI CACGAG 1 cut(s) 615
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 524
Bst6I CTCTTC 2 cut(s) 359, 381
BstC8I GCNNGC 2 cut(s) 864, 868
BstDEI CTNAG 2 cut(s) 301, 335
BstF5I GGATG 4 cut(s) 168, 205, 535, 800
BstKTI GATC 1 cut(s) 493
BstMBI GATC 1 cut(s) 490
BstNI CCWGG 1 cut(s) 159
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 163
BstV2I GAAGAC 1 cut(s) 919
BstXI CCANNNNNNTGG 1 cut(s) 323
BsuRI GGCC 1 cut(s) 854
BtsCI GGATG 4 cut(s) 168, 205, 535, 800
BtsIMutI CAGTG 1 cut(s) 529
Cac8I GCNNGC 2 cut(s) 864, 868
Cfr13I GGNCC 1 cut(s) 310
Csp6I GTAC 3 cut(s) 269, 740, 888
CviAII CATG 4 cut(s) 128, 181, 266, 317
CviJI RGCY 9 cut(s) 176, 224, 359, 443, 590, 788, 854, 870, 884
CviKI_1 RGCY 9 cut(s) 176, 224, 359, 443, 590, 788, 854, 870, 884
CviQI GTAC 3 cut(s) 269, 740, 888
DdeI CTNAG 2 cut(s) 301, 335
DpnI GATC 1 cut(s) 492
DpnII GATC 1 cut(s) 490
Eam1104I CTCTTC 2 cut(s) 359, 381
EarI CTCTTC 2 cut(s) 359, 381
Eco130I CCWWGG 1 cut(s) 593
Eco147I AGGCCT 1 cut(s) 854
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 3 cut(s) 516, 606, 720
EcoO109I RGGNCCY 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 593
ErhI CCWWGG 1 cut(s) 593
FaeI CATG 4 cut(s) 131, 184, 269, 320
FaqI GGGAC 1 cut(s) 323
FatI CATG 4 cut(s) 127, 180, 265, 316
FauI CCCGC 1 cut(s) 647
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 4 cut(s) 175, 212, 542, 787
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 5 cut(s) 42, 272, 360, 594, 812
GluI GCNGC 1 cut(s) 177
GsaI CCCAGC 1 cut(s) 903
HaeIII GGCC 1 cut(s) 854
Hin1II CATG 4 cut(s) 131, 184, 269, 320
HinfI GANTC 3 cut(s) 275, 389, 536
HphI GGTGA 1 cut(s) 653
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 2 cut(s) 478, 541
Hpy188III TCNNGA 1 cut(s) 494
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 2 cut(s) 774, 919
HpyCH4III ACNGT 1 cut(s) 524
HpyCH4V TGCA 3 cut(s) 430, 665, 758
HpyF3I CTNAG 2 cut(s) 301, 335
Hsp92II CATG 4 cut(s) 131, 184, 269, 320
Kzo9I GATC 1 cut(s) 490
LmnI GCTCC 5 cut(s) 173, 262, 356, 595, 793
LpnPI CCDG 9 cut(s) 144, 171, 246, 264, 378, 507, 687, 848, 885
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 3 cut(s) 190, 571, 652
MaeI CTAG 5 cut(s) 42, 272, 360, 594, 812
MaeIII GTNAC 4 cut(s) 37, 68, 670, 717
MalI GATC 1 cut(s) 492
MboI GATC 1 cut(s) 490
MboII GAAGA 4 cut(s) 376, 398, 416, 924
MhlI GDGCHC 1 cut(s) 616
MluCI AATT 7 cut(s) 116, 139, 168, 246, 437, 649, 679
MlyI GAGTC 2 cut(s) 269, 398
MseI TTAA 2 cut(s) 191, 633
MslI CAYNNNNRTG 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 28
MspR9I CCNGG 1 cut(s) 159
MvaI CCWGG 1 cut(s) 159
NdeII GATC 1 cut(s) 490
NlaIII CATG 4 cut(s) 131, 184, 269, 320
NlaIV GGNNCC 1 cut(s) 311
NmuCI GTSAC 1 cut(s) 68
NspI RCATGY 1 cut(s) 269
OliI CACNNNNGTG 1 cut(s) 12
PceI AGGCCT 1 cut(s) 854
PcsI WCGNNNNNNNCGW 1 cut(s) 540
PfeI GAWTC 1 cut(s) 536
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 2 cut(s) 269, 397
PpsI GAGTC 2 cut(s) 269, 397
PpuMI RGGWCCY 1 cut(s) 310
PsiI TTATAA 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 157
PspFI CCCAGC 1 cut(s) 899
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 311
PspPI GGNCC 1 cut(s) 310
PspPPI RGGWCCY 1 cut(s) 310
RsaI GTAC 3 cut(s) 270, 741, 889
RsaNI GTAC 3 cut(s) 269, 740, 888
RseI CAYNNNNRTG 1 cut(s) 12
SaqAI TTAA 2 cut(s) 191, 633
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 1 cut(s) 490
Sau96I GGNCC 1 cut(s) 310
SchI GAGTC 2 cut(s) 269, 398
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 1 cut(s) 616
SfaNI GCATC 3 cut(s) 190, 571, 652
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 7 cut(s) 116, 139, 168, 246, 437, 649, 679
SseBI AGGCCT 1 cut(s) 854
SsiI CCGC 3 cut(s) 26, 654, 821
SspMI CTAG 5 cut(s) 42, 272, 360, 594, 812
StuI AGGCCT 1 cut(s) 854
StyD4I CCNGG 1 cut(s) 157
StyI CCWWGG 1 cut(s) 593
TaaI ACNGT 1 cut(s) 524
TaqI TCGA 1 cut(s) 878
TasI AATT 7 cut(s) 116, 139, 168, 246, 437, 649, 679
TatI WGTACW 1 cut(s) 268
TfiI GAWTC 1 cut(s) 536
Tru1I TTAA 2 cut(s) 191, 633
Tru9I TTAA 2 cut(s) 191, 633
TscAI CASTG 1 cut(s) 529
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 1 cut(s) 417
TspRI CASTG 1 cut(s) 529
VpaK11BI GGWCC 1 cut(s) 310
XceI RCATGY 1 cut(s) 269
XmaJI CCTAGG 1 cut(s) 593
XspI CTAG 5 cut(s) 42, 272, 360, 594, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.