Rw1G022480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0013640
Physical Location & Seq
Reverse (-)
47584025 .. 47587203
3179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G022480.1

Sequence Viewer

Length: 1182 bp
ATGGCAATGGGAAAAGAATTAGGTCATCATGGCATAATAAATTATTGGTATAAGTTGCCTGGGATGGGAATTGGAGCTGCCATGACTTTGTTAAAAAGGGATGCTGATGTTGTTGATATGGTGGCTTTTGTGCCAGATGTGAGGATAATTGCAGTCTACTTGGAGCATGTATTAGACTCTCCTCCTTGTGATATTGCTAACTTAGGGTGGGACCTCCATGACTTTGGAATAGACCTCAGTAAAAGTTCTGATGTGGGAGCTAGGAAGAGAAAAAGTATTGAGATTGAAGAGTCAGGGTTAGATGAAGATGACAATGCTTATGATATAATGCGGACTGAATTAGCTGATAATACAGATGACAATAATAATGACATTTCAGATGGAGATTATGATCCTGAAGTTGATTTTGTTGATAGTGATTACAGTGGGGATGACGATTCGGACGAGGTTGGTTATAATGATGGGATAGCAAGTAGTGTTGATGCTGAAGCTCCTGGGAAAGATGGTGGAAGTGCTCGTGTCAATGTAGGTGTTAATGATGGTGAAACTAATTGCGGGAGTGATGCAAATGTTACAGATAATTTTAGTCATATTATTGAAACTGGAAGTTGGGATATGGTGATGAATAATATTCAATTGGAAGATGTAGAAGAGGAAGAAGACCATCTTTCAAATGAGGAATTGAGAAGCGTGTATGACTCTGATGATGAAAATAATTCTATGAGAAAAAGGGAGCCAGAGTTTAACCCTGAAACTGATATGAAGGACCCCAAATTTGAGTTAGGGATGTTGTTCAGTGATTGTCATGTTTTTAGAGCAGCCATTCGAGAGTATGCAATGTTGCACGGCTACGAGATGAGATGGAAAAGGAATGAGGAATTTAAGTTGAAGGTTTTATGCAAAGGCGAGTTCTGCCCATGGCAAATTTATGCTGGAAAGAGAGCTTCTAATGATGACACATTGCAGTTACAACCAATAACAACTTCAGTACCTCCATCTACATCTGCACCACCTTCCTCAACTTCTACAAGAATAGCTCCACCAACACCATCCACTACTCTAGCACCTCCGCAATGTAATCTTGGCAGGAAATCATCAAAGGCCTCTACGCAGGCAAGCCAAACATCGACAGCTCGTACATCTAATGCTGGGAAAAGAGGAAGACCACCAAAGAAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

393

Amino Acids

43.34

Weight (kDa)

4.46

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 258 - 316 9.7e-10 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 456
AccI GTMKAC 1 cut(s) 156
AciI CCGC 3 cut(s) 331, 555, 1070
AclWI GGATC 1 cut(s) 386
AcsI RAATTY 3 cut(s) 773, 878, 924
AcuI CTGAAG 3 cut(s) 417, 507, 969
AfaI GTAC 2 cut(s) 990, 1138
AfiI CCNNNNNNNGG 1 cut(s) 65
AgsI TTSAA 5 cut(s) 287, 599, 635, 672, 889
AjnI CCWGG 2 cut(s) 58, 493
AjuI GAANNNNNNNTTGG 2 cut(s) 967, 999
AluBI AGCT 7 cut(s) 77, 260, 344, 491, 944, 1037, 1133
AluI AGCT 7 cut(s) 77, 260, 344, 491, 944, 1037, 1133
Alw21I GWGCWC 1 cut(s) 517
AlwI GGATC 1 cut(s) 386
AoxI GGCC 1 cut(s) 1101
ApeKI GCWGC 2 cut(s) 77, 818
ApoI RAATTY 3 cut(s) 773, 878, 924
ArsI GACNNNNNNTTYG 2 cut(s) 758, 790
AspS9I GGNCC 2 cut(s) 211, 766
AsuHPI GGTGA 2 cut(s) 554, 631
AvaII GGWCC 2 cut(s) 211, 766
BaeI ACNNNNGTAYC 2 cut(s) 972, 1005
BauI CACGAG 1 cut(s) 516
BbsI GAAGAC 2 cut(s) 666, 1168
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 2 cut(s) 64, 830
BccI CCATC 9 cut(s) 58, 374, 455, 497, 533, 672, 855, 1003, 1057
BceAI ACGGC 1 cut(s) 862
BciT130I CCWGG 2 cut(s) 60, 495
BfaI CTAG 2 cut(s) 261, 1061
BisI GCNGC 2 cut(s) 78, 819
BlsI GCNGC 2 cut(s) 79, 820
Bme1390I CCNGG 2 cut(s) 60, 495
Bme18I GGWCC 2 cut(s) 211, 766
BmgT120I GGNCC 2 cut(s) 211, 766
BmiI GGNNCC 3 cut(s) 212, 735, 768
BmrFI CCNGG 2 cut(s) 60, 495
BmsI GCATC 3 cut(s) 91, 472, 553
BpiI GAAGAC 2 cut(s) 666, 1168
BsaBI GATNNNNATC 1 cut(s) 390
BsaJI CCNNGG 3 cut(s) 59, 494, 917
BsaXI ACNNNNNCTCC 2 cut(s) 725, 755
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 607
Bse3DI GCAATG 4 cut(s) 12, 843, 959, 1079
Bse8I GATNNNNATC 1 cut(s) 390
BseBI CCWGG 2 cut(s) 60, 495
BseDI CCNNGG 3 cut(s) 59, 494, 917
BseGI GGATG 5 cut(s) 69, 106, 436, 792, 1049
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 1 cut(s) 65
BseMI GCAATG 4 cut(s) 12, 843, 959, 1079
BseMII CTCAG 1 cut(s) 250
BseNI ACTGG 1 cut(s) 607
BseRI GAGGAG 1 cut(s) 171
BseXI GCAGC 2 cut(s) 64, 830
BseYI CCCAGC 1 cut(s) 1148
BsgI GTGCAG 1 cut(s) 990
BshFI GGCC 1 cut(s) 1103
BsiHKAI GWGCWC 1 cut(s) 517
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 1 cut(s) 1103
Bsp1286I GDGCHC 1 cut(s) 517
Bsp143I GATC 1 cut(s) 391
Bsp19I CCATGG 1 cut(s) 917
BspACI CCGC 3 cut(s) 331, 555, 1070
BspANI GGCC 1 cut(s) 1103
BspCNI CTCAG 1 cut(s) 249
BspLI GGNNCC 3 cut(s) 212, 735, 768
BspPI GGATC 1 cut(s) 386
BsrDI GCAATG 4 cut(s) 12, 843, 959, 1079
BsrI ACTGG 1 cut(s) 607
BssECI CCNNGG 3 cut(s) 59, 494, 917
BssMI GATC 1 cut(s) 391
BssSI CACGAG 1 cut(s) 516
BssT1I CCWWGG 1 cut(s) 917
Bst2BI CACGAG 1 cut(s) 516
Bst2UI CCWGG 2 cut(s) 60, 495
Bst4CI ACNGT 1 cut(s) 425
Bst6I CTCTTC 3 cut(s) 260, 282, 645
BstC8I GCNNGC 2 cut(s) 1113, 1117
BstDEI CTNAG 2 cut(s) 202, 236
BstDSI CCRYGG 1 cut(s) 917
BstF5I GGATG 5 cut(s) 69, 106, 436, 792, 1049
BstKTI GATC 1 cut(s) 394
BstMBI GATC 1 cut(s) 391
BstMWI GCNNNNNNNGC 1 cut(s) 912
BstNI CCWGG 2 cut(s) 60, 495
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 2 cut(s) 58, 493
BstV1I GCAGC 2 cut(s) 64, 830
BstV2I GAAGAC 2 cut(s) 666, 1168
BstXI CCANNNNNNTGG 1 cut(s) 224
BsuRI GGCC 1 cut(s) 1103
BtgI CCRYGG 1 cut(s) 917
BtsCI GGATG 5 cut(s) 69, 106, 436, 792, 1049
BtsIMutI CAGTG 2 cut(s) 430, 802
Cac8I GCNNGC 2 cut(s) 1113, 1117
Cfr13I GGNCC 2 cut(s) 211, 766
Csp6I GTAC 2 cut(s) 989, 1137
CviAII CATG 6 cut(s) 29, 82, 167, 218, 806, 918
CviQI GTAC 2 cut(s) 989, 1137
DdeI CTNAG 2 cut(s) 202, 236
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
Eam1104I CTCTTC 3 cut(s) 260, 282, 645
EarI CTCTTC 3 cut(s) 260, 282, 645
Eco130I CCWWGG 1 cut(s) 917
Eco147I AGGCCT 1 cut(s) 1103
Eco47I GGWCC 2 cut(s) 211, 766
Eco57I CTGAAG 3 cut(s) 417, 507, 969
EcoO109I RGGNCCY 2 cut(s) 211, 766
EcoRII CCWGG 2 cut(s) 58, 493
EcoT14I CCWWGG 1 cut(s) 917
ErhI CCWWGG 1 cut(s) 917
FaeI CATG 6 cut(s) 32, 85, 170, 221, 809, 921
FalI AAGNNNNNCTT 2 cut(s) 651, 683
FaqI GGGAC 1 cut(s) 224
FatI CATG 6 cut(s) 28, 81, 166, 217, 805, 917
FauI CCCGC 1 cut(s) 548
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 78, 819
FokI GGATG 5 cut(s) 76, 113, 443, 799, 1036
Fsp4HI GCNGC 2 cut(s) 78, 819
FspBI CTAG 2 cut(s) 261, 1061
GluI GCNGC 2 cut(s) 78, 819
GsaI CCCAGC 1 cut(s) 1152
HaeIII GGCC 1 cut(s) 1103
Hin1II CATG 6 cut(s) 32, 85, 170, 221, 809, 921
HinfI GANTC 4 cut(s) 176, 290, 437, 698
HphI GGTGA 2 cut(s) 554, 631
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 4 cut(s) 250, 379, 442, 703
Hpy188III TCNNGA 2 cut(s) 395, 827
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 4 cut(s) 757, 883, 1023, 1168
HpyCH4III ACNGT 1 cut(s) 425
HpyCH4V TGCA 7 cut(s) 152, 566, 836, 844, 900, 964, 1007
HpyF10VI GCNNNNNNNGC 1 cut(s) 912
HpyF3I CTNAG 2 cut(s) 202, 236
Hsp92II CATG 6 cut(s) 32, 85, 170, 221, 809, 921
Kzo9I GATC 1 cut(s) 391
LmnI GCTCC 6 cut(s) 74, 163, 257, 496, 733, 1042
Lsp1109I GCAGC 2 cut(s) 64, 830
LweI GCATC 3 cut(s) 91, 472, 553
MaeI CTAG 2 cut(s) 261, 1061
MaeIII GTNAC 2 cut(s) 571, 966
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 8 cut(s) 277, 299, 317, 653, 662, 668, 671, 1173
MfeI CAATTG 1 cut(s) 635
MhlI GDGCHC 1 cut(s) 517
MlyI GAGTC 3 cut(s) 170, 299, 692
MseI TTAA 4 cut(s) 92, 534, 744, 882
MspR9I CCNGG 2 cut(s) 60, 495
MunI CAATTG 1 cut(s) 635
MvaI CCWGG 2 cut(s) 60, 495
MwoI GCNNNNNNNGC 1 cut(s) 912
NcoI CCATGG 1 cut(s) 917
NdeII GATC 1 cut(s) 391
NlaIII CATG 6 cut(s) 32, 85, 170, 221, 809, 921
NlaIV GGNNCC 3 cut(s) 212, 735, 768
NspI RCATGY 1 cut(s) 170
PceI AGGCCT 1 cut(s) 1103
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PfeI GAWTC 1 cut(s) 437
PkrI GCNGC 2 cut(s) 79, 820
PleI GAGTC 3 cut(s) 170, 298, 692
PpsI GAGTC 3 cut(s) 170, 298, 692
PpuMI RGGWCCY 2 cut(s) 211, 766
PsiI TTATAA 1 cut(s) 456
Psp5II RGGWCCY 2 cut(s) 211, 766
Psp6I CCWGG 2 cut(s) 58, 493
PspFI CCCAGC 1 cut(s) 1148
PspGI CCWGG 2 cut(s) 58, 493
PspN4I GGNNCC 3 cut(s) 212, 735, 768
PspPI GGNCC 2 cut(s) 211, 766
PspPPI RGGWCCY 2 cut(s) 211, 766
RsaI GTAC 2 cut(s) 990, 1138
RsaNI GTAC 2 cut(s) 989, 1137
SaqAI TTAA 4 cut(s) 92, 534, 744, 882
SatI GCNGC 2 cut(s) 78, 819
Sau3AI GATC 1 cut(s) 391
Sau96I GGNCC 2 cut(s) 211, 766
SchI GAGTC 3 cut(s) 170, 299, 692
ScrFI CCNGG 2 cut(s) 60, 495
SduI GDGCHC 1 cut(s) 517
SfaNI GCATC 3 cut(s) 91, 472, 553
SinI GGWCC 2 cut(s) 211, 766
SseBI AGGCCT 1 cut(s) 1103
SsiI CCGC 3 cut(s) 331, 555, 1070
SspI AATATT 1 cut(s) 631
SspMI CTAG 2 cut(s) 261, 1061
StuI AGGCCT 1 cut(s) 1103
StyD4I CCNGG 2 cut(s) 58, 493
StyI CCWWGG 1 cut(s) 917
TaaI ACNGT 1 cut(s) 425
TaqI TCGA 2 cut(s) 826, 1127
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 4 cut(s) 92, 534, 744, 882
Tru9I TTAA 4 cut(s) 92, 534, 744, 882
TscAI CASTG 2 cut(s) 430, 802
TseI GCWGC 2 cut(s) 77, 818
TspDTI ATGAA 4 cut(s) 318, 638, 723, 776
TspRI CASTG 2 cut(s) 430, 802
VpaK11BI GGWCC 2 cut(s) 211, 766
XapI RAATTY 3 cut(s) 773, 878, 924
XceI RCATGY 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 156
XspI CTAG 2 cut(s) 261, 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.