Rroxscaffold_7G00172770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013640
Physical Location & Seq
Forward (+)
12910344 .. 12912157
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00172770.1

Sequence Viewer

Length: 339 bp
ATGGCTTCGGCCTCATCGTCGAATGGCGGGTGTTGCCGGACTAGTTCGTGGAGTCTTGAGGTTTTAGGTTTTGCTTTTTCTTCATTGGTATGGGCTCTGTATGATGTGTCTTTTCTCTCGGGCAGTAGCGTAGGCGTGGTTGATGGGCGATTGGCGATCGACGACGGTGCAAACATGGACATGAGAAACCACCGCCCTCTCGCCCTAGCCAAGAAAGACGAACTCGGTACCCAAACAACCAGGAAGAAGCCGTTGCAACCGAGCTATGACAAGCATATCCCTCATCGCTACTATGCGGATCCCGTTGTGCTTGACCTCAATAGCGCCGCCATTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.1

Weight (kDa)

6.81

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 227
AciI CCGC 4 cut(s) 27, 193, 296, 327
AclWI GGATC 2 cut(s) 293, 306
AfaI GTAC 1 cut(s) 229
AhlI ACTAGT 1 cut(s) 41
AjnI CCWGG 1 cut(s) 239
AluBI AGCT 1 cut(s) 264
AluI AGCT 1 cut(s) 264
AlwI GGATC 2 cut(s) 293, 306
Ama87I CYCGRG 1 cut(s) 118
AoxI GGCC 1 cut(s) 9
Asp718I GGTACC 1 cut(s) 227
AspLEI GCGC 1 cut(s) 326
AvaI CYCGRG 1 cut(s) 118
BamHI GGATCC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 97
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 235
BcgI CGANNNNNNTGC 2 cut(s) 149, 183
BciT130I CCWGG 1 cut(s) 241
BcuI ACTAGT 1 cut(s) 41
BfaI CTAG 2 cut(s) 42, 206
BfoI RGCGCY 1 cut(s) 327
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
Bme1390I CCNGG 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 118
BmiI GGNNCC 2 cut(s) 229, 300
BmrFI CCNGG 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 241
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 11
BshNI GGYRCC 1 cut(s) 227
BsiEI CGRYCG 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 1 cut(s) 37
BsnI GGCC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 2 cut(s) 156, 298
BspACI CCGC 4 cut(s) 27, 193, 296, 327
BspANI GGCC 1 cut(s) 11
BspLI GGNNCC 2 cut(s) 229, 300
BspPI GGATC 2 cut(s) 293, 306
BspT107I GGYRCC 1 cut(s) 227
BssMI GATC 2 cut(s) 156, 298
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 167
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 1 cut(s) 326
BstKTI GATC 2 cut(s) 159, 301
BstMBI GATC 2 cut(s) 156, 298
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNI CCWGG 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BsuRI GGCC 1 cut(s) 11
BtgZI GCGATG 1 cut(s) 269
CfoI GCGC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 228
CviAII CATG 2 cut(s) 175, 181
CviJI RGCY 6 cut(s) 5, 11, 95, 209, 250, 264
CviKI_1 RGCY 6 cut(s) 5, 11, 95, 209, 250, 264
CviQI GTAC 1 cut(s) 228
DpnI GATC 2 cut(s) 158, 300
DpnII GATC 2 cut(s) 156, 298
Eco24I GRGCYC 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 97
FaeI CATG 2 cut(s) 178, 184
FaiI YATR 8 cut(s) 91, 102, 176, 182, 267, 276, 294, 337
FatI CATG 2 cut(s) 174, 180
FauI CCCGC 1 cut(s) 20
Fnu4HI GCNGC 1 cut(s) 327
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 327
FspBI CTAG 2 cut(s) 42, 206
GlaI GCGC 1 cut(s) 325
GluI GCNGC 1 cut(s) 327
HaeII RGCGCY 1 cut(s) 327
HaeIII GGCC 1 cut(s) 11
HapII CCGG 1 cut(s) 37
HhaI GCGC 1 cut(s) 326
Hin1II CATG 2 cut(s) 178, 184
Hin6I GCGC 1 cut(s) 324
HinP1I GCGC 1 cut(s) 324
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 56
Hpy99I CGWCG 3 cut(s) 22, 164, 167
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 2 cut(s) 170, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
Hsp92II CATG 2 cut(s) 178, 184
HspAI GCGC 1 cut(s) 324
KpnI GGTACC 1 cut(s) 231
Kzo9I GATC 2 cut(s) 156, 298
LpnPI CCDG 3 cut(s) 50, 226, 253
MaeI CTAG 2 cut(s) 42, 206
MalI GATC 2 cut(s) 158, 300
MboI GATC 2 cut(s) 156, 298
MboII GAAGA 2 cut(s) 72, 256
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 1 cut(s) 97
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 5 cut(s) 22, 52, 207, 291, 326
MslI CAYNNNNRTG 2 cut(s) 88, 179
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 1 cut(s) 241
MvaI CCWGG 1 cut(s) 241
MwoI GCNNNNNNNGC 1 cut(s) 33
NdeII GATC 2 cut(s) 156, 298
NlaIII CATG 2 cut(s) 178, 184
NlaIV GGNNCC 2 cut(s) 229, 300
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PkrI GCNGC 1 cut(s) 328
Ple19I CGATCG 1 cut(s) 159
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 239
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 229, 300
PsuI RGATCY 1 cut(s) 298
PvuI CGATCG 1 cut(s) 159
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 2 cut(s) 88, 179
SatI GCNGC 1 cut(s) 327
Sau3AI GATC 2 cut(s) 156, 298
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 241
SduI GDGCHC 1 cut(s) 97
SetI ASST 4 cut(s) 63, 70, 266, 318
SmiMI CAYNNNNRTG 2 cut(s) 88, 179
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SpeI ACTAGT 1 cut(s) 41
SsiI CCGC 4 cut(s) 27, 193, 296, 327
SspMI CTAG 2 cut(s) 42, 206
StyD4I CCNGG 1 cut(s) 239
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 2 cut(s) 20, 159
TauI GCSGC 1 cut(s) 329
TspDTI ATGAA 1 cut(s) 72
XspI CTAG 2 cut(s) 42, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.