E3 ubiquitin-protein ligase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G32740 AT1G32740 AT1G32740 AT1G32740 |
| fragaria_vesca | FvH4_3g23840 FvH4_3g23840 FvH4_3g23840 FvH4_5g16050 FvH4_5g20850 FvH4_5g20850 |
| malus_domestica | MD06G1043600.v1.1 |
| prunus_persica | Prupe.2G192200_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.6G165200_v2.0.a1 Prupe.7G181900_v2.0.a1 Prupe.8G197800_v2.0.a1 |
| pyrus_communis | pycom06g03650 |
| rosa_chinensis | RchiOBHm_Chr7g0207871 |
| rosa_laevigata | RLG00000003280 |
| rosa_multiflora | Rmu_ssc0000451.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00251090 |
| rosa_rugosa | Rorug07G0099900 Rorug07G0100000 |
| rosa_samantha | Rh7AG233200 Rh7BG228800 Rh7CG248500 Rh7DG239200 |
| rosa_wichuraiana | Rw7G020020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 2 cut(s) | 162, 224 |
| AfaI | GTAC | 3 cut(s) | 20, 98, 148 |
| AgsI | TTSAA | 3 cut(s) | 11, 124, 204 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 20, 52 |
| AluBI | AGCT | 3 cut(s) | 14, 176, 244 |
| AluI | AGCT | 3 cut(s) | 14, 176, 244 |
| Alw26I | GTCTC | 1 cut(s) | 277 |
| AspLEI | GCGC | 1 cut(s) | 85 |
| AsuHPI | GGTGA | 1 cut(s) | 251 |
| BclI | TGATCA | 1 cut(s) | 103 |
| BcoDI | GTCTC | 1 cut(s) | 277 |
| BfaI | CTAG | 1 cut(s) | 134 |
| BmcAI | AGTACT | 1 cut(s) | 148 |
| BseMII | CTCAG | 1 cut(s) | 29 |
| BslFI | GGGAC | 1 cut(s) | 214 |
| BsmAI | GTCTC | 1 cut(s) | 277 |
| BsmBI | CGTCTC | 1 cut(s) | 277 |
| BsmFI | GGGAC | 1 cut(s) | 214 |
| Bsp143I | GATC | 1 cut(s) | 103 |
| BspCNI | CTCAG | 1 cut(s) | 28 |
| BssMI | GATC | 1 cut(s) | 103 |
| Bst4CI | ACNGT | 1 cut(s) | 228 |
| Bst6I | CTCTTC | 2 cut(s) | 163, 243 |
| BstDEI | CTNAG | 1 cut(s) | 15 |
| BstHHI | GCGC | 1 cut(s) | 85 |
| BstKTI | GATC | 1 cut(s) | 106 |
| BstMAI | GTCTC | 1 cut(s) | 277 |
| BstMBI | GATC | 1 cut(s) | 103 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 11, 182 |
| BstNSI | RCATGY | 1 cut(s) | 118 |
| BtsIMutI | CAGTG | 1 cut(s) | 186 |
| CfoI | GCGC | 1 cut(s) | 85 |
| Csp6I | GTAC | 3 cut(s) | 19, 97, 147 |
| CviAII | CATG | 4 cut(s) | 65, 115, 196, 279 |
| CviJI | RGCY | 3 cut(s) | 14, 176, 244 |
| CviKI_1 | RGCY | 3 cut(s) | 14, 176, 244 |
| CviQI | GTAC | 3 cut(s) | 19, 97, 147 |
| DdeI | CTNAG | 1 cut(s) | 15 |
| DpnI | GATC | 1 cut(s) | 105 |
| DpnII | GATC | 1 cut(s) | 103 |
| Eam1104I | CTCTTC | 2 cut(s) | 163, 243 |
| EarI | CTCTTC | 2 cut(s) | 163, 243 |
| Eco57I | CTGAAG | 2 cut(s) | 162, 224 |
| Esp3I | CGTCTC | 1 cut(s) | 277 |
| FaeI | CATG | 4 cut(s) | 68, 118, 199, 282 |
| FaiI | YATR | 4 cut(s) | 66, 116, 197, 280 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 160, 192 |
| FaqI | GGGAC | 1 cut(s) | 214 |
| FatI | CATG | 4 cut(s) | 64, 114, 195, 278 |
| FbaI | TGATCA | 1 cut(s) | 103 |
| FspBI | CTAG | 1 cut(s) | 134 |
| GlaI | GCGC | 1 cut(s) | 84 |
| HhaI | GCGC | 1 cut(s) | 85 |
| Hin1II | CATG | 4 cut(s) | 68, 118, 199, 282 |
| Hin6I | GCGC | 1 cut(s) | 83 |
| HinP1I | GCGC | 1 cut(s) | 83 |
| HindIII | AAGCTT | 1 cut(s) | 174 |
| HinfI | GANTC | 1 cut(s) | 208 |
| HphI | GGTGA | 1 cut(s) | 251 |
| HpyAV | CCTTC | 4 cut(s) | 33, 53, 210, 223 |
| HpyCH4III | ACNGT | 1 cut(s) | 228 |
| HpyCH4V | TGCA | 1 cut(s) | 223 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 11, 182 |
| HpyF3I | CTNAG | 1 cut(s) | 15 |
| Hsp92II | CATG | 4 cut(s) | 68, 118, 199, 282 |
| HspAI | GCGC | 1 cut(s) | 83 |
| Ksp22I | TGATCA | 1 cut(s) | 103 |
| Kzo9I | GATC | 1 cut(s) | 103 |
| MaeI | CTAG | 1 cut(s) | 134 |
| MalI | GATC | 1 cut(s) | 105 |
| MboI | GATC | 1 cut(s) | 103 |
| MboII | GAAGA | 2 cut(s) | 180, 230 |
| MnlI | CCTC | 3 cut(s) | 131, 158, 246 |
| MslI | CAYNNNNRTG | 1 cut(s) | 264 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 11, 182 |
| NdeII | GATC | 1 cut(s) | 103 |
| NlaIII | CATG | 4 cut(s) | 68, 118, 199, 282 |
| NspI | RCATGY | 1 cut(s) | 118 |
| PfeI | GAWTC | 1 cut(s) | 208 |
| RsaI | GTAC | 3 cut(s) | 20, 98, 148 |
| RsaNI | GTAC | 3 cut(s) | 19, 97, 147 |
| RseI | CAYNNNNRTG | 1 cut(s) | 264 |
| Sau3AI | GATC | 1 cut(s) | 103 |
| ScaI | AGTACT | 1 cut(s) | 148 |
| SetI | ASST | 5 cut(s) | 16, 102, 178, 238, 246 |
| SgeI | CNNG | 9 cut(s) | 68, 77, 92, 101, 113, 127, 146, 172, 208 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 264 |
| SspI | AATATT | 1 cut(s) | 31 |
| SspMI | CTAG | 1 cut(s) | 134 |
| TaaI | ACNGT | 1 cut(s) | 228 |
| TatI | WGTACW | 1 cut(s) | 146 |
| TfiI | GAWTC | 1 cut(s) | 208 |
| TscAI | CASTG | 1 cut(s) | 193 |
| TspRI | CASTG | 1 cut(s) | 193 |
| XceI | RCATGY | 1 cut(s) | 118 |
| XspI | CTAG | 1 cut(s) | 134 |
| ZrmI | AGTACT | 1 cut(s) | 148 |