Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000451.1

Orthogroup ID

OG0004388

Physical Location & Seq

Genomic Coordinates Reverse (-)

593 .. 1743

Gene Structure 1151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000451.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgctattcaacaatggtgtaggagggaatagtactaatcagcgcaagagaggaagagaaacttcagttggcactgatatcacaccttcaatgattcccttctctttgcaacagtcccaacctcctcaactcatcgacctctctcagctccacaaccacaaccaccatcccaatgtcgtctccaccggcctccgattatcttttggagaccaacaacaacaattgcaacagcatcatcacaatcaacaacaacaacaggattgtcactcttcttcatctctgttgtctgttttggcagtggactttgcctcccaaatcaaacaacagagggacgaattagaccagttccttcaagcccagggggaacaactacagcgcacattagcagagaagcggcagacacactaccgtgcgctactgggcgcagctgaggagtctatttcccgtaaattgcgagagaaggaggcagaggtccaaaaggccacgcgcagaaacgccgagttagaggcacgcgccgcccagctcagcgttgaggctcagatatggcaggccaaggcccgtgcgcaggaggccaccgccgcgtccctccaggtccaagtccaacaggccaaggccatgatgagcgcggggttccaagtggcgggtgcgcaggatagcaggagagccgacgatgggctaacatgcgccgaaaaccaggcggaggatgccgagtcagggtacattgacccggaacgcgccaccgggtcgggtccgagttgtaaagcgtgtcggaaaggagtggcgtcagtggtgctgttgccgtgtcggcacctatgcctctgtacagagtgtgaccaaatggttcagtcctgcccattgtgtctcaccttgagaaattcgagtgtggaagtcttcctttgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prok-RING_4 zf-C3HC4_3

Protein Analysis

300

Amino Acids

33.06

Weight (kDa)

6.55

Isoelectric Point (pI)

60.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32740 AT1G32740 AT1G32740 AT1G32740
fragaria_vesca	FvH4_3g23840 FvH4_3g23840 FvH4_3g23840 FvH4_5g16050 FvH4_5g20850 FvH4_5g20850
malus_domestica	MD06G1043600.v1.1
prunus_persica	Prupe.2G192200_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.6G165200_v2.0.a1 Prupe.7G181900_v2.0.a1 Prupe.8G197800_v2.0.a1
pyrus_communis	pycom06g03650
rosa_chinensis	RchiOBHm_Chr7g0207871
rosa_laevigata	RLG00000003280
rosa_multiflora	Rmu_ssc0000451.1_g000001
rosa_roxburghii	Rroxscaffold_3G00251090
rosa_rugosa	Rorug07G0099900 Rorug07G0100000
rosa_samantha	Rh7AG233200 Rh7BG228800 Rh7CG248500 Rh7DG239200
rosa_wichuraiana	Rw7G020020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	564, 648
AccB1I	GGYRCC	1 cut(s)	807
AccII	CGCG	5 cut(s)	487, 513, 581, 626, 735
AciI	CCGC	7 cut(s)	394, 516, 576, 579, 626, 641, 698
AcsI	RAATTY	1 cut(s)	874
AcuI	CTGAAG	1 cut(s)	48
AcyI	GRCGYC	1 cut(s)	782
AfaI	GTAC	3 cut(s)	34, 719, 823
AfiI	CCNNNNNNNGG	5 cut(s)	565, 640, 672, 700, 714
AgsI	TTSAA	3 cut(s)	10, 90, 353
AjnI	CCWGG	3 cut(s)	357, 588, 693
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AleI	CACNNNNGTG	1 cut(s)	408
AluBI	AGCT	3 cut(s)	148, 428, 523
AluI	AGCT	3 cut(s)	148, 428, 523
Alw26I	GTCTC	3 cut(s)	184, 201, 866
AoxI	GGCC	7 cut(s)	187, 480, 549, 555, 570, 606, 612
ApeKI	GCWGC	1 cut(s)	425
ApoI	RAATTY	1 cut(s)	874
AspS9I	GGNCC	4 cut(s)	472, 556, 592, 749
AsuC2I	CCSGG	2 cut(s)	728, 742
AsuHPI	GGTGA	1 cut(s)	856
AvaII	GGWCC	3 cut(s)	472, 592, 749
BanI	GGYRCC	1 cut(s)	807
BbsI	GAAGAC	1 cut(s)	883
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	2 cut(s)	174, 665
BceAI	ACGGC	1 cut(s)	784
BciT130I	CCWGG	3 cut(s)	359, 590, 695
BcnI	CCSGG	2 cut(s)	728, 742
BcoDI	GTCTC	3 cut(s)	184, 201, 866
BfaI	CTAG	1 cut(s)	901
BfmI	CTRYAG	1 cut(s)	371
BglI	GCCNNNNNGGC	1 cut(s)	805
BisI	GCNGC	4 cut(s)	395, 426, 516, 579
BlpI	GCTNAGC	1 cut(s)	524
BlsI	GCNGC	4 cut(s)	396, 427, 517, 580
BmcAI	AGTACT	1 cut(s)	34
Bme1390I	CCNGG	5 cut(s)	359, 590, 695, 728, 742
Bme18I	GGWCC	3 cut(s)	472, 592, 749
BmgT120I	GGNCC	4 cut(s)	472, 556, 592, 749
BmiI	GGNNCC	3 cut(s)	632, 750, 809
BmrFI	CCNGG	5 cut(s)	359, 590, 695, 728, 742
BmrI	ACTGGG	1 cut(s)	428
BmsI	GCATC	2 cut(s)	241, 694
BmuI	ACTGGG	1 cut(s)	428
BpiI	GAAGAC	1 cut(s)	883
BpmI	CTGGAG	1 cut(s)	572
Bpu10I	CCTNAGC	1 cut(s)	429
Bpu1102I	GCTNAGC	1 cut(s)	524
BpuEI	CTTGAG	1 cut(s)	889
BpuMI	CCSGG	2 cut(s)	728, 742
BsaHI	GRCGYC	1 cut(s)	782
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	4 cut(s)	357, 358, 552, 609
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	5 cut(s)	565, 640, 672, 700, 714
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	343, 423
BseBI	CCWGG	3 cut(s)	359, 590, 695
BseDI	CCNNGG	4 cut(s)	357, 358, 552, 609
BseGI	GGATG	2 cut(s)	166, 709
BseLI	CCNNNNNNNGG	5 cut(s)	565, 640, 672, 700, 714
BseMII	CTCAG	4 cut(s)	158, 420, 538, 551
BseNI	ACTGG	2 cut(s)	343, 423
BseRI	GAGGAG	2 cut(s)	114, 446
BseXI	GCAGC	1 cut(s)	437
BseYI	CCCAGC	1 cut(s)	519
Bsh1236I	CGCG	5 cut(s)	487, 513, 581, 626, 735
BshFI	GGCC	7 cut(s)	189, 482, 551, 557, 572, 608, 614
BshNI	GGYRCC	1 cut(s)	807
BsiSI	CCGG	3 cut(s)	186, 728, 741
BslFI	GGGAC	3 cut(s)	100, 344, 568
BslI	CCNNNNNNNGG	5 cut(s)	565, 640, 672, 700, 714
BsmAI	GTCTC	3 cut(s)	184, 201, 866
BsmBI	CGTCTC	1 cut(s)	184
BsmFI	GGGAC	3 cut(s)	100, 344, 568
BsnI	GGCC	7 cut(s)	189, 482, 551, 557, 572, 608, 614
Bso31I	GGTCTC	1 cut(s)	201
Bsp1407I	TGTACA	1 cut(s)	821
Bsp1720I	GCTNAGC	1 cut(s)	524
BspACI	CCGC	7 cut(s)	394, 516, 576, 579, 626, 641, 698
BspANI	GGCC	7 cut(s)	189, 482, 551, 557, 572, 608, 614
BspCNI	CTCAG	4 cut(s)	157, 421, 537, 550
BspFNI	CGCG	5 cut(s)	487, 513, 581, 626, 735
BspLI	GGNNCC	3 cut(s)	632, 750, 809
BspT107I	GGYRCC	1 cut(s)	807
BspTNI	GGTCTC	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	821
BsrI	ACTGG	2 cut(s)	343, 423
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	4 cut(s)	357, 358, 552, 609
BssNI	GRCGYC	1 cut(s)	782
BssT1I	CCWWGG	2 cut(s)	552, 609
Bst2UI	CCWGG	3 cut(s)	359, 590, 695
Bst4CI	ACNGT	2 cut(s)	114, 410
Bst6I	CTCTTC	2 cut(s)	49, 274
BstACI	GRCGYC	1 cut(s)	782
BstAUI	TGTACA	1 cut(s)	821
BstC8I	GCNNGC	2 cut(s)	511, 549
BstDEI	CTNAG	4 cut(s)	144, 429, 524, 537
BstF5I	GGATG	2 cut(s)	166, 709
BstFNI	CGCG	5 cut(s)	487, 513, 581, 626, 735
BstMAI	GTCTC	3 cut(s)	184, 201, 866
BstMWI	GCNNNNNNNGC	5 cut(s)	515, 569, 578, 704, 805
BstNI	CCWGG	3 cut(s)	359, 590, 695
BstNSI	RCATGY	1 cut(s)	684
BstSCI	CCNGG	5 cut(s)	357, 588, 693, 726, 740
BstSFI	CTRYAG	1 cut(s)	371
BstUI	CGCG	5 cut(s)	487, 513, 581, 626, 735
BstV1I	GCAGC	1 cut(s)	437
BstV2I	GAAGAC	1 cut(s)	883
BsuRI	GGCC	7 cut(s)	189, 482, 551, 557, 572, 608, 614
BtsCI	GGATG	2 cut(s)	166, 709
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	3 cut(s)	72, 303, 792
Cac8I	GCNNGC	2 cut(s)	511, 549
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	4 cut(s)	472, 556, 592, 749
CseI	GACGC	2 cut(s)	570, 771
Csp6I	GTAC	3 cut(s)	33, 718, 822
CviAII	CATG	2 cut(s)	616, 681
CviQI	GTAC	3 cut(s)	33, 718, 822
DdeI	CTNAG	4 cut(s)	144, 429, 524, 537
Eam1104I	CTCTTC	2 cut(s)	49, 274
EarI	CTCTTC	2 cut(s)	49, 274
EciI	GGCGGA	1 cut(s)	713
Eco130I	CCWWGG	2 cut(s)	552, 609
Eco31I	GGTCTC	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	79
Eco47I	GGWCC	3 cut(s)	472, 592, 749
Eco57I	CTGAAG	1 cut(s)	48
EcoRII	CCWGG	3 cut(s)	357, 588, 693
EcoRV	GATATC	1 cut(s)	79
EcoT14I	CCWWGG	2 cut(s)	552, 609
ErhI	CCWWGG	2 cut(s)	552, 609
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	2 cut(s)	619, 684
FaiI	YATR	4 cut(s)	544, 617, 682, 814
FalI	AAGNNNNNCTT	3 cut(s)	46, 78, 879
FaqI	GGGAC	3 cut(s)	100, 344, 568
FatI	CATG	2 cut(s)	615, 680
FauI	CCCGC	2 cut(s)	619, 634
Fnu4HI	GCNGC	4 cut(s)	395, 426, 516, 579
FokI	GGATG	2 cut(s)	153, 716
Fsp4HI	GCNGC	4 cut(s)	395, 426, 516, 579
FspBI	CTAG	1 cut(s)	901
FspI	TGCGCA	2 cut(s)	564, 648
GluI	GCNGC	4 cut(s)	395, 426, 516, 579
GsaI	CCCAGC	1 cut(s)	523
GsuI	CTGGAG	1 cut(s)	572
HaeIII	GGCC	7 cut(s)	189, 482, 551, 557, 572, 608, 614
HapII	CCGG	3 cut(s)	186, 728, 741
HgaI	GACGC	2 cut(s)	570, 771
Hin1I	GRCGYC	1 cut(s)	782
Hin1II	CATG	2 cut(s)	619, 684
HinfI	GANTC	3 cut(s)	94, 434, 710
HpaII	CCGG	3 cut(s)	186, 728, 741
HphI	GGTGA	1 cut(s)	856
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	4 cut(s)	194, 540, 753, 771
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	1 cut(s)	671
HpyAV	CCTTC	4 cut(s)	96, 109, 359, 454
HpyCH4III	ACNGT	2 cut(s)	114, 410
HpyCH4V	TGCA	2 cut(s)	109, 226
HpyF10VI	GCNNNNNNNGC	5 cut(s)	515, 569, 578, 704, 805
HpyF3I	CTNAG	4 cut(s)	144, 429, 524, 537
Hsp92I	GRCGYC	1 cut(s)	782
Hsp92II	CATG	2 cut(s)	619, 684
LmnI	GCTCC	1 cut(s)	153
Lsp1109I	GCAGC	1 cut(s)	437
LweI	GCATC	2 cut(s)	241, 694
MaeI	CTAG	1 cut(s)	901
MaeIII	GTNAC	2 cut(s)	263, 830
MboII	GAAGA	4 cut(s)	66, 261, 264, 883
MfeI	CAATTG	1 cut(s)	221
MluCI	AATT	4 cut(s)	221, 335, 449, 874
MlyI	GAGTC	2 cut(s)	443, 719
MmeI	TCCRAC	2 cut(s)	625, 749
MslI	CAYNNNNRTG	2 cut(s)	171, 408
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	3 cut(s)	186, 728, 741
MspR9I	CCNGG	5 cut(s)	359, 590, 695, 728, 742
MunI	CAATTG	1 cut(s)	221
MvaI	CCWGG	3 cut(s)	359, 590, 695
MvnI	CGCG	5 cut(s)	487, 513, 581, 626, 735
MwoI	GCNNNNNNNGC	5 cut(s)	515, 569, 578, 704, 805
NciI	CCSGG	2 cut(s)	728, 742
NlaIII	CATG	2 cut(s)	619, 684
NlaIV	GGNNCC	3 cut(s)	632, 750, 809
NmeAIII	GCCGAG	2 cut(s)	523, 733
NmuCI	GTSAC	2 cut(s)	263, 830
NsbI	TGCGCA	2 cut(s)	564, 648
NspI	RCATGY	1 cut(s)	684
OliI	CACNNNNGTG	1 cut(s)	408
PasI	CCCWGGG	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	4 cut(s)	396, 427, 517, 580
PleI	GAGTC	2 cut(s)	442, 718
PpsI	GAGTC	2 cut(s)	442, 718
Psp6I	CCWGG	3 cut(s)	357, 588, 693
PspFI	CCCAGC	1 cut(s)	519
PspGI	CCWGG	3 cut(s)	357, 588, 693
PspN4I	GGNNCC	3 cut(s)	632, 750, 809
PspPI	GGNCC	4 cut(s)	472, 556, 592, 749
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	3 cut(s)	34, 719, 823
RsaNI	GTAC	3 cut(s)	33, 718, 822
RseI	CAYNNNNRTG	2 cut(s)	171, 408
SatI	GCNGC	4 cut(s)	395, 426, 516, 579
Sau96I	GGNCC	4 cut(s)	472, 556, 592, 749
ScaI	AGTACT	1 cut(s)	34
SchI	GAGTC	2 cut(s)	443, 719
ScrFI	CCNGG	5 cut(s)	359, 590, 695, 728, 742
SfaNI	GCATC	2 cut(s)	241, 694
SfcI	CTRYAG	1 cut(s)	371
SinI	GGWCC	3 cut(s)	472, 592, 749
SmiMI	CAYNNNNRTG	2 cut(s)	171, 408
SmlI	CTYRAG	1 cut(s)	868
SmoI	CTYRAG	1 cut(s)	868
Sse9I	AATT	4 cut(s)	221, 335, 449, 874
SsiI	CCGC	7 cut(s)	394, 516, 576, 579, 626, 641, 698
SspMI	CTAG	1 cut(s)	901
StyD4I	CCNGG	5 cut(s)	357, 588, 693, 726, 740
StyI	CCWWGG	2 cut(s)	552, 609
TaaI	ACNGT	2 cut(s)	114, 410
TaqI	TCGA	2 cut(s)	135, 878
TasI	AATT	4 cut(s)	221, 335, 449, 874
TatI	WGTACW	2 cut(s)	32, 821
TauI	GCSGC	3 cut(s)	397, 518, 581
TfiI	GAWTC	1 cut(s)	94
TscAI	CASTG	3 cut(s)	79, 303, 792
TseFI	GTSAC	2 cut(s)	263, 830
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	2 cut(s)	263, 830
TspDTI	ATGAA	1 cut(s)	264
TspRI	CASTG	3 cut(s)	79, 303, 792
VpaK11BI	GGWCC	3 cut(s)	472, 592, 749
XapI	RAATTY	1 cut(s)	874
XceI	RCATGY	1 cut(s)	684
XspI	CTAG	1 cut(s)	901
ZrmI	AGTACT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.