Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004388

Physical Location & Seq

Genomic Coordinates Forward (+)

5349096 .. 5351754

Gene Structure 2659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G050300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCAGTTCAAGCTCAATACCCTTCAAATATCCTCTTTCTAAACAGAAACTCACAAGAAGGGCATGATTATTCCTTACAAGCACAGCCAGGAGGATATCTTGATCAATCCCACATGCTATTCAACAATGGAGGAGGAGCAGTCAATAATACTACCAATCAGCGCAAAAGAGGAAGAGAAACTTCAGCTGCCACTGAAATCTCACCTTCAATCCTTCCTTTCTCTCTGCAACAACAATCCCAACCTCCTCCTCCTCAGCTCATCGACCTCTCCCAACTCCACAACCACAACCACAACCACAACAATCCCAATGTGGTCTCCACAGGCCTCCGTTTATCCTTTGGAGACCAACAACAACAACAACAGCAACAGCAGCAACAATTTCAACAGCATCACAATCAACAACAACAACAACACTCTTCAGCTTTGTTCTCTGTTTTAACAGAGGACTTTGCTACCCAAATCAAACACCAGCGGGACGAATTAGACCAATTCCTTCAAGCCCAGGGGGAGCAACTGCAGCGCACATTAGCAGAGAAACGGCAGAGGCACTATCGTGCGCTACTGAACGCAGCAGAGGAATCAATAGCTCGTAGGTTGAGAGAGAAAGAGGTGGAGGTTGAGAAGGCCACGCGTAGAAATGCCGAGTTGGAAGCACGCGCTGCGCAACTTAGCGTGGAGGCCCAGGTTTGGCAGGCTAAGGCCCGGGCACAACAGGCCACTGCTGCGACCCTACAGGCCCAACTGCAGCAGGCTATGATGAGCGGCGGGTTTGTGGCGGCTCAGGATAGCAGGAGAGGGGACGATGGAGTAGCATCCCCGGCTGGCGTAGAGGGCCAAGCTGAGGATGCCGAGTCGGCATACATTGACCCGGAAAGAGTGACCATGTCTGCCCCGAGTTGTAAAGCGTGTCGAAAACGGGTCGCATCGGTGGTTATACTGCCATGCCGGCACTTATGCCTCTGTACAGAGTGTGACCAAATGGTTCAGGCCTGCCCATTGTGCCTCTGCATGAGAAATTCAAGTGTGGAAGTCTTTCTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prok-RING_4 zf-C3HC4_3

Protein Analysis

349

Amino Acids

38.82

Weight (kDa)

6.46

Isoelectric Point (pI)

77.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32740 AT1G32740 AT1G32740 AT1G32740
fragaria_vesca	FvH4_3g23840 FvH4_3g23840 FvH4_3g23840 FvH4_5g16050 FvH4_5g20850 FvH4_5g20850
malus_domestica	MD06G1043600.v1.1
prunus_persica	Prupe.2G192200_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.6G165200_v2.0.a1 Prupe.7G181900_v2.0.a1 Prupe.8G197800_v2.0.a1
pyrus_communis	pycom06g03650
rosa_chinensis	RchiOBHm_Chr7g0207871
rosa_laevigata	RLG00000003280
rosa_multiflora	Rmu_ssc0000451.1_g000001
rosa_roxburghii	Rroxscaffold_3G00251090
rosa_rugosa	Rorug07G0099900 Rorug07G0100000
rosa_samantha	Rh7AG233200 Rh7BG228800 Rh7CG248500 Rh7DG239200
rosa_wichuraiana	Rw7G020020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	666
AccBSI	CCGCTC	1 cut(s)	765
AccII	CGCG	2 cut(s)	634, 660
AciI	CCGC	4 cut(s)	475, 765, 768, 779
AcsI	RAATTY	1 cut(s)	1018
AcuI	CTGAAG	2 cut(s)	168, 405
AfaI	GTAC	1 cut(s)	967
AfiI	CCNNNNNNNGG	2 cut(s)	690, 844
AflIII	ACRYGT	1 cut(s)	632
AgsI	TTSAA	7 cut(s)	11, 27, 124, 210, 386, 500, 1023
AjnI	CCWGG	3 cut(s)	88, 504, 684
AleI	CACNNNNGTG	1 cut(s)	555
AluBI	AGCT	6 cut(s)	14, 188, 259, 425, 590, 842
AluI	AGCT	6 cut(s)	14, 188, 259, 425, 590, 842
Alw26I	GTCTC	2 cut(s)	322, 339
Ama87I	CYCGRG	2 cut(s)	705, 895
AoxI	GGCC	8 cut(s)	325, 627, 681, 702, 717, 738, 835, 990
ApeKI	GCWGC	7 cut(s)	188, 373, 520, 572, 662, 725, 748
ApoI	RAATTY	1 cut(s)	1018
Asp700I	GAANNNNTTC	1 cut(s)	1035
AspLEI	GCGC	5 cut(s)	165, 525, 562, 662, 667
AspS9I	GGNCC	4 cut(s)	682, 703, 739, 835
AsuC2I	CCSGG	4 cut(s)	706, 707, 821, 872
AsuHPI	GGTGA	1 cut(s)	195
AvaI	CYCGRG	2 cut(s)	705, 895
BaeGI	GKGCMC	1 cut(s)	712
BbvCI	CCTCAGC	2 cut(s)	255, 843
BbvI	GCAGC	7 cut(s)	175, 385, 532, 584, 649, 712, 760
BccI	CCATC	1 cut(s)	800
BceAI	ACGGC	1 cut(s)	557
BciT130I	CCWGG	3 cut(s)	90, 506, 686
BclI	TGATCA	1 cut(s)	103
BcnI	CCSGG	4 cut(s)	706, 707, 821, 872
BcoDI	GTCTC	2 cut(s)	322, 339
BfmI	CTRYAG	3 cut(s)	518, 734, 746
BglI	GCCNNNNNGGC	2 cut(s)	857, 949
BisI	GCNGC	9 cut(s)	189, 374, 521, 573, 663, 726, 749, 766, 780
BlsI	GCNGC	9 cut(s)	190, 375, 522, 574, 664, 727, 750, 767, 781
Bme1390I	CCNGG	7 cut(s)	90, 506, 686, 706, 707, 821, 872
BmeT110I	CYCGRG	2 cut(s)	705, 895
BmgT120I	GGNCC	4 cut(s)	682, 703, 739, 835
BmrFI	CCNGG	7 cut(s)	90, 506, 686, 706, 707, 821, 872
BmsI	GCATC	4 cut(s)	400, 824, 838, 935
Bpu10I	CCTNAGC	4 cut(s)	255, 699, 783, 843
BpuMI	CCSGG	4 cut(s)	706, 707, 821, 872
BsaI	GGTCTC	2 cut(s)	322, 339
BsaJI	CCNNGG	5 cut(s)	504, 505, 684, 705, 819
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bsc4I	CCNNNNNNNGG	2 cut(s)	690, 844
Bse118I	RCCGGY	1 cut(s)	948
BseBI	CCWGG	3 cut(s)	90, 506, 686
BseDI	CCNNGG	5 cut(s)	504, 505, 684, 705, 819
BseGI	GGATG	2 cut(s)	815, 853
BseLI	CCNNNNNNNGG	2 cut(s)	690, 844
BseMII	CTCAG	3 cut(s)	269, 797, 834
BseRI	GAGGAG	5 cut(s)	147, 150, 237, 240, 243
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	7 cut(s)	175, 385, 532, 584, 649, 712, 760
Bsh1236I	CGCG	2 cut(s)	634, 660
BshFI	GGCC	8 cut(s)	327, 629, 683, 704, 719, 740, 837, 992
BsiHKCI	CYCGRG	2 cut(s)	705, 895
BsiSI	CCGG	4 cut(s)	706, 821, 872, 949
BslFI	GGGAC	2 cut(s)	491, 815
BslI	CCNNNNNNNGG	2 cut(s)	690, 844
BsmAI	GTCTC	2 cut(s)	322, 339
BsmFI	GGGAC	2 cut(s)	491, 815
BsnI	GGCC	8 cut(s)	327, 629, 683, 704, 719, 740, 837, 992
Bso31I	GGTCTC	2 cut(s)	322, 339
BsoBI	CYCGRG	2 cut(s)	705, 895
Bsp1286I	GDGCHC	1 cut(s)	712
Bsp1407I	TGTACA	1 cut(s)	965
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	4 cut(s)	475, 765, 768, 779
BspANI	GGCC	8 cut(s)	327, 629, 683, 704, 719, 740, 837, 992
BspCNI	CTCAG	3 cut(s)	268, 796, 835
BspFNI	CGCG	2 cut(s)	634, 660
BspMAI	CTGCAG	2 cut(s)	522, 750
BspTNI	GGTCTC	2 cut(s)	322, 339
BsrBI	CCGCTC	1 cut(s)	765
BsrFI	RCCGGY	1 cut(s)	948
BsrGI	TGTACA	1 cut(s)	965
BssAI	RCCGGY	1 cut(s)	948
BssECI	CCNNGG	5 cut(s)	504, 505, 684, 705, 819
BssMI	GATC	1 cut(s)	103
Bst2UI	CCWGG	3 cut(s)	90, 506, 686
Bst6I	CTCTTC	2 cut(s)	169, 424
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstAUI	TGTACA	1 cut(s)	965
BstC8I	GCNNGC	6 cut(s)	658, 696, 753, 826, 950, 994
BstDEI	CTNAG	6 cut(s)	255, 671, 699, 783, 843, 1044
BstF5I	GGATG	2 cut(s)	815, 853
BstFNI	CGCG	2 cut(s)	634, 660
BstHHI	GCGC	5 cut(s)	165, 525, 562, 662, 667
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	2 cut(s)	322, 339
BstMBI	GATC	1 cut(s)	103
BstNI	CCWGG	3 cut(s)	90, 506, 686
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	7 cut(s)	88, 504, 684, 704, 705, 819, 870
BstSFI	CTRYAG	3 cut(s)	518, 734, 746
BstSLI	GKGCMC	1 cut(s)	712
BstUI	CGCG	2 cut(s)	634, 660
BstV1I	GCAGC	7 cut(s)	175, 385, 532, 584, 649, 712, 760
BsuRI	GGCC	8 cut(s)	327, 629, 683, 704, 719, 740, 837, 992
BtsCI	GGATG	2 cut(s)	815, 853
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	2 cut(s)	192, 720
Cac8I	GCNNGC	6 cut(s)	658, 696, 753, 826, 950, 994
CfoI	GCGC	5 cut(s)	165, 525, 562, 662, 667
Cfr10I	RCCGGY	1 cut(s)	948
Cfr13I	GGNCC	4 cut(s)	682, 703, 739, 835
Cfr9I	CCCGGG	1 cut(s)	705
Csp6I	GTAC	1 cut(s)	966
CviAII	CATG	5 cut(s)	65, 115, 886, 945, 1012
CviQI	GTAC	1 cut(s)	966
DdeI	CTNAG	6 cut(s)	255, 671, 699, 783, 843, 1044
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eam1104I	CTCTTC	2 cut(s)	169, 424
EarI	CTCTTC	2 cut(s)	169, 424
Eco147I	AGGCCT	2 cut(s)	327, 992
Eco31I	GGTCTC	2 cut(s)	322, 339
Eco32I	GATATC	1 cut(s)	98
Eco57I	CTGAAG	2 cut(s)	168, 405
Eco88I	CYCGRG	2 cut(s)	705, 895
EcoRII	CCWGG	3 cut(s)	88, 504, 684
EcoRV	GATATC	1 cut(s)	98
FaeI	CATG	5 cut(s)	68, 118, 889, 948, 1015
FaiI	YATR	9 cut(s)	66, 116, 758, 862, 887, 938, 946, 958, 1013
FalI	AAGNNNNNCTT	3 cut(s)	166, 198, 1023
FaqI	GGGAC	2 cut(s)	491, 815
FatI	CATG	5 cut(s)	64, 114, 885, 944, 1011
FauI	CCCGC	2 cut(s)	468, 761
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	9 cut(s)	189, 374, 521, 573, 663, 726, 749, 766, 780
FokI	GGATG	2 cut(s)	802, 860
Fsp4HI	GCNGC	9 cut(s)	189, 374, 521, 573, 663, 726, 749, 766, 780
FspI	TGCGCA	1 cut(s)	666
GlaI	GCGC	5 cut(s)	164, 524, 561, 661, 666
GluI	GCNGC	9 cut(s)	189, 374, 521, 573, 663, 726, 749, 766, 780
HaeIII	GGCC	8 cut(s)	327, 629, 683, 704, 719, 740, 837, 992
HapII	CCGG	4 cut(s)	706, 821, 872, 949
HhaI	GCGC	5 cut(s)	165, 525, 562, 662, 667
Hin1II	CATG	5 cut(s)	68, 118, 889, 948, 1015
Hin6I	GCGC	5 cut(s)	163, 523, 560, 660, 665
HinP1I	GCGC	5 cut(s)	163, 523, 560, 660, 665
HinfI	GANTC	2 cut(s)	581, 854
HpaII	CCGG	4 cut(s)	706, 821, 872, 949
HphI	GGTGA	1 cut(s)	195
Hpy188III	TCNNGA	2 cut(s)	101, 785
HpyAV	CCTTC	6 cut(s)	33, 53, 216, 224, 506, 619
HpyCH4V	TGCA	4 cut(s)	229, 520, 748, 1011
HpyF3I	CTNAG	6 cut(s)	255, 671, 699, 783, 843, 1044
Hsp92II	CATG	5 cut(s)	68, 118, 889, 948, 1015
HspAI	GCGC	5 cut(s)	163, 523, 560, 660, 665
KroI	GCCGGC	1 cut(s)	948
KroNI	GCCGGC	1 cut(s)	950
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	2 cut(s)	137, 511
Lsp1109I	GCAGC	7 cut(s)	175, 385, 532, 584, 649, 712, 760
LweI	GCATC	4 cut(s)	400, 824, 838, 935
MaeIII	GTNAC	2 cut(s)	880, 974
MalI	GATC	1 cut(s)	105
MbiI	CCGCTC	1 cut(s)	765
MboI	GATC	1 cut(s)	103
MboII	GAAGA	2 cut(s)	186, 411
MhlI	GDGCHC	1 cut(s)	712
MluCI	AATT	4 cut(s)	380, 482, 491, 1018
MluI	ACGCGT	1 cut(s)	632
MlyI	GAGTC	1 cut(s)	863
MmeI	TCCRAC	1 cut(s)	630
MroNI	GCCGGC	1 cut(s)	948
MroXI	GAANNNNTTC	1 cut(s)	1035
MseI	TTAA	1 cut(s)	440
MslI	CAYNNNNRTG	1 cut(s)	555
MspA1I	CMGCKG	2 cut(s)	188, 475
MspI	CCGG	4 cut(s)	706, 821, 872, 949
MspR9I	CCNGG	7 cut(s)	90, 506, 686, 706, 707, 821, 872
MteI	GCGCNGCGC	1 cut(s)	663
MvaI	CCWGG	3 cut(s)	90, 506, 686
MvnI	CGCG	2 cut(s)	634, 660
NaeI	GCCGGC	1 cut(s)	950
NciI	CCSGG	4 cut(s)	706, 707, 821, 872
NdeII	GATC	1 cut(s)	103
NgoMIV	GCCGGC	1 cut(s)	948
NlaIII	CATG	5 cut(s)	68, 118, 889, 948, 1015
NmeAIII	GCCGAG	2 cut(s)	670, 877
NmuCI	GTSAC	2 cut(s)	880, 974
NsbI	TGCGCA	1 cut(s)	666
NspI	RCATGY	1 cut(s)	118
OliI	CACNNNNGTG	1 cut(s)	555
PasI	CCCWGGG	1 cut(s)	505
PceI	AGGCCT	2 cut(s)	327, 992
PdiI	GCCGGC	1 cut(s)	950
PdmI	GAANNNNTTC	1 cut(s)	1035
PfeI	GAWTC	1 cut(s)	581
PflFI	GACNNNGTC	1 cut(s)	886
PkrI	GCNGC	9 cut(s)	190, 375, 522, 574, 664, 727, 750, 767, 781
PleI	GAGTC	1 cut(s)	862
PpsI	GAGTC	1 cut(s)	862
Psp6I	CCWGG	3 cut(s)	88, 504, 684
PspGI	CCWGG	3 cut(s)	88, 504, 684
PspPI	GGNCC	4 cut(s)	682, 703, 739, 835
PstI	CTGCAG	2 cut(s)	522, 750
PsyI	GACNNNGTC	1 cut(s)	886
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	967
RsaNI	GTAC	1 cut(s)	966
RseI	CAYNNNNRTG	1 cut(s)	555
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	9 cut(s)	189, 374, 521, 573, 663, 726, 749, 766, 780
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	4 cut(s)	682, 703, 739, 835
SchI	GAGTC	1 cut(s)	863
ScrFI	CCNGG	7 cut(s)	90, 506, 686, 706, 707, 821, 872
SduI	GDGCHC	1 cut(s)	712
SfaNI	GCATC	4 cut(s)	400, 824, 838, 935
SfcI	CTRYAG	3 cut(s)	518, 734, 746
SmaI	CCCGGG	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	555
SrfI	GCCCGGGC	1 cut(s)	707
Sse9I	AATT	4 cut(s)	380, 482, 491, 1018
SseBI	AGGCCT	2 cut(s)	327, 992
SsiI	CCGC	4 cut(s)	475, 765, 768, 779
StuI	AGGCCT	2 cut(s)	327, 992
StyD4I	CCNGG	7 cut(s)	88, 504, 684, 704, 705, 819, 870
TaqI	TCGA	2 cut(s)	264, 913
TasI	AATT	4 cut(s)	380, 482, 491, 1018
TatI	WGTACW	1 cut(s)	965
TauI	GCSGC	2 cut(s)	768, 782
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TscAI	CASTG	2 cut(s)	199, 727
TseFI	GTSAC	2 cut(s)	880, 974
TseI	GCWGC	7 cut(s)	188, 373, 520, 572, 662, 725, 748
Tsp45I	GTSAC	2 cut(s)	880, 974
TspGWI	ACGGA	1 cut(s)	320
TspMI	CCCGGG	1 cut(s)	705
TspRI	CASTG	2 cut(s)	199, 727
Tth111I	GACNNNGTC	1 cut(s)	886
XapI	RAATTY	1 cut(s)	1018
XceI	RCATGY	1 cut(s)	118
XmaI	CCCGGG	1 cut(s)	705
XmnI	GAANNNNTTC	1 cut(s)	1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.