Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004388

Physical Location & Seq

Genomic Coordinates Reverse (-)

7896349 .. 7897074

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0100000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAAAGCCTAAAGGCAAATGACCCTAGTGTTAAAAGTCCTCAAGTGGAGAAGCTACAAGAGCAGTTCATGAATTTGCAACAAGAGTGGAAGTCATACAAACAGTCCTACCCCAAAACCAAGAGGAGATCATATTCTTCATCATCAAGCACCATGGCCAAAACCCGATCAAGGCACCTCATGTCTTCACTTCAGCACAGAATGTTTCCCTCGGAAGGCGATAATTGGAATGTCAGGACTAATGATTTTGCAGTGGAAGAGATCAGAAGAGACCGAAGGGCGGCGATTGAGAGTGGCAAGTTGAAGGGGAGGAGGCTGTTTGAGGATGAGCATGAAGAAACTGAGATTGGTTATGGAGGAGAAGAGAGTGAATGGGGTAGCTGGGATGATTGGGATCAGGAGAGTGAGGTGAGATCACTTCCATTATGTGGTTCTGGTGGTGAAGAAGTTGAATCAGGTAAGAGCAAAGAGATTAAAGTTTGTTTTCAGGATTCCATTTCATCTTTGACCTTTTCCCCATGTGGTGAGAAAATGAAGGAAGAAGAGAAACTGGTGACTGTGGAAGAGAAGGAGGTTGTTGAGAATGAAGGGGGTAATTGGGTAAGGTGCATTGTTGTGATCATGCATGTGCTTGCCATTGCTGCACTTATATTTGCAATTTGCAGTATCATGGGTCTTTATGGATATGGGAATGAACATTATGAGCTAATTCTAGTCCCAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prok-RING_4 zf-C3HC4_3

Protein Analysis

241

Amino Acids

27.58

Weight (kDa)

5.11

Isoelectric Point (pI)

73.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004388)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32740 AT1G32740 AT1G32740 AT1G32740
fragaria_vesca	FvH4_3g23840 FvH4_3g23840 FvH4_3g23840 FvH4_5g16050 FvH4_5g20850 FvH4_5g20850
malus_domestica	MD06G1043600.v1.1
prunus_persica	Prupe.2G192200_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.5G050300_v2.0.a1 Prupe.6G165200_v2.0.a1 Prupe.7G181900_v2.0.a1 Prupe.8G197800_v2.0.a1
pyrus_communis	pycom06g03650
rosa_chinensis	RchiOBHm_Chr7g0207871
rosa_laevigata	RLG00000003280
rosa_multiflora	Rmu_ssc0000451.1_g000001
rosa_roxburghii	Rroxscaffold_3G00251090
rosa_rugosa	Rorug07G0099900 Rorug07G0100000
rosa_samantha	Rh7AG233200 Rh7BG228800 Rh7CG248500 Rh7DG239200
rosa_wichuraiana	Rw7G020020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	174
AccB7I	CCANNNNNTGG	1 cut(s)	428
AciI	CCGC	1 cut(s)	281
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	1 cut(s)	176
AfiI	CCNNNNNNNGG	4 cut(s)	171, 215, 280, 428
AgsI	TTSAA	2 cut(s)	304, 452
AjuI	GAANNNNNNNTTGG	2 cut(s)	330, 362
AluBI	AGCT	3 cut(s)	55, 381, 706
AluI	AGCT	3 cut(s)	55, 381, 706
Alw26I	GTCTC	1 cut(s)	264
AlwI	GGATC	1 cut(s)	402
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	641
ApoI	RAATTY	1 cut(s)	73
AsuHPI	GGTGA	4 cut(s)	421, 452, 536, 565
BalI	TGGCCA	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	628
BclI	TGATCA	1 cut(s)	618
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	2 cut(s)	27, 713
BisI	GCNGC	2 cut(s)	282, 642
BlsI	GCNGC	2 cut(s)	283, 643
BmiI	GGNNCC	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	153, 210
Bsc4I	CCNNNNNNNGG	4 cut(s)	171, 215, 280, 428
Bse1I	ACTGG	1 cut(s)	555
Bse3DI	GCAATG	1 cut(s)	636
Bse8I	GATNNNNATC	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	153, 210
BseGI	GGATG	2 cut(s)	331, 391
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	4 cut(s)	171, 215, 280, 428
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	555
BseRI	GAGGAG	3 cut(s)	139, 325, 372
BseXI	GCAGC	1 cut(s)	628
BseYI	CCCAGC	1 cut(s)	381
BsgI	GTGCAG	1 cut(s)	627
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	4 cut(s)	171, 215, 280, 428
BsmAI	GTCTC	1 cut(s)	264
BsmFI	GGGAC	1 cut(s)	701
BsnI	GGCC	1 cut(s)	158
Bso31I	GGTCTC	1 cut(s)	264
Bsp143I	GATC	6 cut(s)	128, 167, 261, 394, 413, 618
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	1 cut(s)	281
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	1 cut(s)	334
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	174
BspTNI	GGTCTC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	636
BsrI	ACTGG	1 cut(s)	555
BssECI	CCNNGG	2 cut(s)	153, 210
BssMI	GATC	6 cut(s)	128, 167, 261, 394, 413, 618
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	2 cut(s)	105, 559
Bst6I	CTCTTC	5 cut(s)	252, 262, 357, 537, 558
BstC8I	GCNNGC	1 cut(s)	633
BstDEI	CTNAG	1 cut(s)	342
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	2 cut(s)	331, 391
BstKTI	GATC	6 cut(s)	131, 170, 264, 397, 416, 621
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	6 cut(s)	128, 167, 261, 394, 413, 618
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 641
BstNSI	RCATGY	1 cut(s)	629
BstV1I	GCAGC	1 cut(s)	628
BstV2I	GAAGAC	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	158
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	331, 391
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	1 cut(s)	633
CciI	TCATGA	1 cut(s)	69
CspCI	CAANNNNNGTGG	2 cut(s)	68, 103
CviAII	CATG	8 cut(s)	70, 154, 181, 332, 519, 622, 626, 670
CviJI	RGCY	6 cut(s)	9, 55, 158, 316, 381, 706
CviKI_1	RGCY	6 cut(s)	9, 55, 158, 316, 381, 706
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	6 cut(s)	130, 169, 263, 396, 415, 620
DpnII	GATC	6 cut(s)	128, 167, 261, 394, 413, 618
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	5 cut(s)	252, 262, 357, 537, 558
EarI	CTCTTC	5 cut(s)	252, 262, 357, 537, 558
Eco130I	CCWWGG	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	627
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	8 cut(s)	73, 157, 184, 335, 522, 625, 629, 673
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	8 cut(s)	69, 153, 180, 331, 518, 621, 625, 669
FbaI	TGATCA	1 cut(s)	618
Fnu4HI	GCNGC	2 cut(s)	282, 642
FokI	GGATG	2 cut(s)	338, 398
Fsp4HI	GCNGC	2 cut(s)	282, 642
FspBI	CTAG	2 cut(s)	27, 713
GluI	GCNGC	2 cut(s)	282, 642
GsaI	CCCAGC	1 cut(s)	385
HaeIII	GGCC	1 cut(s)	158
Hin1II	CATG	8 cut(s)	73, 157, 184, 335, 522, 625, 629, 673
HinfI	GANTC	2 cut(s)	452, 491
HphI	GGTGA	4 cut(s)	421, 452, 536, 565
Hpy188I	TCNGA	2 cut(s)	214, 266
Hpy188III	TCNNGA	4 cut(s)	70, 235, 398, 488
HpyAV	CCTTC	6 cut(s)	209, 270, 298, 529, 562, 581
HpyCH4III	ACNGT	2 cut(s)	105, 559
HpyCH4IV	ACGT	1 cut(s)	722
HpyCH4V	TGCA	7 cut(s)	79, 251, 609, 625, 644, 656, 663
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 641
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	722
Hsp92II	CATG	8 cut(s)	73, 157, 184, 335, 522, 625, 629, 673
Ksp22I	TGATCA	1 cut(s)	618
Kzo9I	GATC	6 cut(s)	128, 167, 261, 394, 413, 618
LpnPI	CCDG	7 cut(s)	220, 367, 383, 420, 441, 473, 536
Lsp1109I	GCAGC	1 cut(s)	628
MaeI	CTAG	2 cut(s)	27, 713
MaeII	ACGT	1 cut(s)	722
MaeIII	GTNAC	1 cut(s)	553
MalI	GATC	6 cut(s)	130, 169, 263, 396, 415, 620
MboI	GATC	6 cut(s)	128, 167, 261, 394, 413, 618
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	5 cut(s)	73, 223, 595, 657, 708
MluNI	TGGCCA	1 cut(s)	158
Mox20I	TGGCCA	1 cut(s)	158
Mph1103I	ATGCAT	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	2 cut(s)	33, 474
MslI	CAYNNNNRTG	2 cut(s)	614, 626
Msp20I	TGGCCA	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	61, 641
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	6 cut(s)	128, 167, 261, 394, 413, 618
NlaIII	CATG	8 cut(s)	73, 157, 184, 335, 522, 625, 629, 673
NlaIV	GGNNCC	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	553
NsiI	ATGCAT	1 cut(s)	627
NspI	RCATGY	1 cut(s)	629
PagI	TCATGA	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	452, 491
PflMI	CCANNNNNTGG	1 cut(s)	428
PkrI	GCNGC	2 cut(s)	283, 643
PspFI	CCCAGC	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	176
RseI	CAYNNNNRTG	2 cut(s)	614, 626
SaqAI	TTAA	2 cut(s)	33, 474
SatI	GCNGC	2 cut(s)	282, 642
Sau3AI	GATC	6 cut(s)	128, 167, 261, 394, 413, 618
SmiMI	CAYNNNNRTG	2 cut(s)	614, 626
SmlI	CTYRAG	1 cut(s)	42
SmoI	CTYRAG	1 cut(s)	42
Sse9I	AATT	5 cut(s)	73, 223, 595, 657, 708
SsiI	CCGC	1 cut(s)	281
SspMI	CTAG	2 cut(s)	27, 713
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	105, 559
TaiI	ACGT	1 cut(s)	725
TaqII	GACCGA	1 cut(s)	288
TasI	AATT	5 cut(s)	73, 223, 595, 657, 708
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	452, 491
Tru1I	TTAA	2 cut(s)	33, 474
Tru9I	TTAA	2 cut(s)	33, 474
TscAI	CASTG	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	553
TseI	GCWGC	1 cut(s)	641
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	8 cut(s)	58, 86, 129, 348, 489, 548, 600, 708
TspRI	CASTG	1 cut(s)	258
Van91I	CCANNNNNTGG	1 cut(s)	428
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	1 cut(s)	629
XspI	CTAG	2 cut(s)	27, 713
Zsp2I	ATGCAT	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.