Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003498

Physical Location & Seq

Genomic Coordinates Forward (+)

29945992 .. 29946303

Gene Structure 312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCAGGTCGCGGCAAGGGAGGCAAGGGATTGGGCAAGGGAGGAGCCAAGCGTCACAGGAAGGTCCTCAGGGATAACATCCAGGGCATCACCAAGCCTGCTATTCGCCGTTTGGCTCGCAGAGGCGGCGTCAAGCGTATCTCCGGTCTCATCTATGAAGAGACCAGAGGCGTCCTCAAGATCTTCCTTGAGAACGTCATCCGTGACGCCGTCACCTACACCGAGCACGCCCGGAGGAAGACTGTCACCGCCATGGACGTCGTGTATGCTCTCAAGAGGCAGGGAAGGACCCTCTATGGTTTCGGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044815 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

CENP-T_C

Protein Analysis

104

Amino Acids

11.41

Weight (kDa)

11.48

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-T_C	PF15511	44 - 96	3.4e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07660
fragaria_vesca	FvH4_3g34560 FvH4_3g35181 FvH4_3g35183 FvH4_3g35220 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_6g14140 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20780
malus_domestica	MD01G1124600.v1.1 MD11G1117800.v1.1
prunus_persica	Prupe.2G232000_v2.0.a1 Prupe.2G232200_v2.0.a1 Prupe.5G134000_v2.0.a1 Prupe.6G081300_v2.0.a1 Prupe.6G251900_v2.0.a1 Prupe.7G028400_v2.0.a1
rosa_laevigata	RLG00000027349 RLG00000027452 RLG00000035544 RLG00000035615 RLG00000035618 RLG00000035660 RLG00000035661 RLG00000035663
rosa_multiflora	Rmu_sc0005638.1_g000004 Rmu_ssc0000250.1_g000014 Rmu_ssc0000309.1_g000042 Rmu_ssc0000309.1_g000043

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
AccII	CGCG	1 cut(s)	12
AciI	CCGC	3 cut(s)	12, 126, 249
AcyI	GRCGYC	4 cut(s)	129, 171, 207, 258
AjnI	CCWGG	1 cut(s)	81
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	2 cut(s)	152, 155
AspS9I	GGNCC	2 cut(s)	64, 288
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	3 cut(s)	82, 205, 238
AvaII	GGWCC	2 cut(s)	64, 288
AxyI	CCTNAGG	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	228
BceAI	ACGGC	2 cut(s)	93, 194
BciT130I	CCWGG	1 cut(s)	83
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	152, 155
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	2 cut(s)	13, 127
BlsI	GCNGC	2 cut(s)	14, 128
Bme1390I	CCNGG	2 cut(s)	83, 232
Bme18I	GGWCC	2 cut(s)	64, 288
BmgT120I	GGNCC	2 cut(s)	64, 288
BmiI	GGNNCC	2 cut(s)	46, 290
BmrFI	CCNGG	2 cut(s)	83, 232
BmsI	GCATC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	245
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
BpuEI	CTTGAG	3 cut(s)	161, 209, 257
BpuMI	CCSGG	1 cut(s)	232
BsaHI	GRCGYC	4 cut(s)	129, 171, 207, 258
BsaI	GGTCTC	2 cut(s)	152, 155
BsaJI	CCNNGG	2 cut(s)	82, 252
BsaWI	WCCGGW	1 cut(s)	143
Bse21I	CCTNAGG	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	82, 252
BseGI	GGATG	2 cut(s)	78, 198
BseMII	CTCAG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	57
Bsh1236I	CGCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	2 cut(s)	144, 232
BsmAI	GTCTC	2 cut(s)	152, 155
Bso31I	GGTCTC	2 cut(s)	152, 155
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	3 cut(s)	12, 126, 249
BspCNI	CTCAG	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	46, 290
BspTNI	GGTCTC	2 cut(s)	152, 155
BssECI	CCNNGG	2 cut(s)	82, 252
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	4 cut(s)	129, 171, 207, 258
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	4 cut(s)	129, 171, 207, 258
BstC8I	GCNNGC	3 cut(s)	99, 118, 228
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	78, 198
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	2 cut(s)	152, 155
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 126
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	2 cut(s)	81, 230
BstUI	CGCG	1 cut(s)	12
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
Bsu36I	CCTNAGG	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	78, 198
Cac8I	GCNNGC	3 cut(s)	99, 118, 228
Cfr13I	GGNCC	2 cut(s)	64, 288
CseI	GACGC	4 cut(s)	41, 118, 160, 215
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	3 cut(s)	47, 97, 116
CviKI_1	RGCY	3 cut(s)	47, 97, 116
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	252
Eco31I	GGTCTC	2 cut(s)	152, 155
Eco47I	GGWCC	2 cut(s)	64, 288
Eco81I	CCTNAGG	1 cut(s)	68
EcoO109I	RGGNCCY	2 cut(s)	64, 288
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	256
FaiI	YATR	4 cut(s)	156, 254, 267, 297
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	13, 127
FokI	GGATG	2 cut(s)	65, 185
Fsp4HI	GCNGC	2 cut(s)	13, 127
GluI	GCNGC	2 cut(s)	13, 127
HapII	CCGG	2 cut(s)	144, 232
HgaI	GACGC	4 cut(s)	41, 118, 160, 215
Hin1I	GRCGYC	4 cut(s)	129, 171, 207, 258
Hin1II	CATG	1 cut(s)	256
HpaII	CCGG	2 cut(s)	144, 232
HphI	GGTGA	3 cut(s)	82, 205, 238
Hpy188I	TCNGA	1 cut(s)	305
Hpy188III	TCNNGA	2 cut(s)	178, 274
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	2 cut(s)	55, 279
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	2 cut(s)	195, 258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 126
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	2 cut(s)	195, 258
Hsp92I	GRCGYC	4 cut(s)	129, 171, 207, 258
Hsp92II	CATG	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	9 cut(s)	43, 55, 68, 95, 111, 157, 178, 245, 266
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	2 cut(s)	195, 258
MaeIII	GTNAC	4 cut(s)	53, 203, 211, 244
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	3 cut(s)	170, 175, 250
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	2 cut(s)	144, 232
MspR9I	CCNGG	2 cut(s)	83, 232
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	2 cut(s)	21, 126
NciI	CCSGG	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	2 cut(s)	46, 290
NmuCI	GTSAC	4 cut(s)	53, 203, 211, 244
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	14, 128
PpuMI	RGGWCCY	2 cut(s)	64, 288
Psp5II	RGGWCCY	2 cut(s)	64, 288
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	2 cut(s)	46, 290
PspPI	GGNCC	2 cut(s)	64, 288
PspPPI	RGGWCCY	2 cut(s)	64, 288
PsuI	RGATCY	1 cut(s)	180
PsyI	GACNNNGTC	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	251
SatI	GCNGC	2 cut(s)	13, 127
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	2 cut(s)	64, 288
ScrFI	CCNGG	2 cut(s)	83, 232
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	6 cut(s)	10, 66, 198, 218, 261, 310
SfaNI	GCATC	1 cut(s)	96
SinI	GGWCC	2 cut(s)	64, 288
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	3 cut(s)	176, 188, 272
SmoI	CTYRAG	3 cut(s)	176, 188, 272
SsiI	CCGC	3 cut(s)	12, 126, 249
StyD4I	CCNGG	2 cut(s)	81, 230
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	2 cut(s)	198, 261
TauI	GCSGC	2 cut(s)	15, 129
TseFI	GTSAC	4 cut(s)	53, 203, 211, 244
Tsp45I	GTSAC	4 cut(s)	53, 203, 211, 244
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	1 cut(s)	191
Tth111I	GACNNNGTC	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	64, 288
ZraI	GACGTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.