Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003498

Physical Location & Seq

Genomic Coordinates Forward (+)

30368097 .. 30368408

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35183.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCAGGGCGCGGCAAGGGAGGCAAGGGATTGGGAAAGGGAGGAGCCAAGCGTCACAGGAAGGTCCTCAGGGATAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTTTGGCTCGCAGAGGCGGCGTCAAGCGTATCTCCGGTCTTATCTACGAAGAGACCAGAGGAGTCCTCAAGATCTTTCTCGAGAACGTCATCCGTGACGCCGTCACTTACACCGAGCACGCTCGCAGGAAGACAGTCACCGCCATGGATGTTGTTTATGCTTTGAAGAGGCAAGGGAGGACCCTCTACGGATTCGGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044815 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

CENP-T_C

Protein Analysis

104

Amino Acids

11.41

Weight (kDa)

11.48

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-T_C	PF15511	44 - 96	3.4e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07660
fragaria_vesca	FvH4_3g34560 FvH4_3g35181 FvH4_3g35183 FvH4_3g35220 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_6g14140 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20780
malus_domestica	MD01G1124600.v1.1 MD11G1117800.v1.1
prunus_persica	Prupe.2G232000_v2.0.a1 Prupe.2G232200_v2.0.a1 Prupe.5G134000_v2.0.a1 Prupe.6G081300_v2.0.a1 Prupe.6G251900_v2.0.a1 Prupe.7G028400_v2.0.a1
rosa_laevigata	RLG00000027349 RLG00000027452 RLG00000035544 RLG00000035615 RLG00000035618 RLG00000035660 RLG00000035661 RLG00000035663
rosa_multiflora	Rmu_sc0005638.1_g000004 Rmu_ssc0000250.1_g000014 Rmu_ssc0000309.1_g000042 Rmu_ssc0000309.1_g000043

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	12
AciI	CCGC	5 cut(s)	12, 99, 106, 126, 249
AcyI	GRCGYC	2 cut(s)	129, 207
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	81
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	64, 288
AsuHPI	GGTGA	2 cut(s)	82, 238
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	64, 288
AxyI	CCTNAGG	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	228
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	2 cut(s)	93, 194
BciT130I	CCWGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	155
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	2 cut(s)	13, 127
BlsI	GCNGC	2 cut(s)	14, 128
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	2 cut(s)	64, 288
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	64, 288
BmiI	GGNNCC	2 cut(s)	46, 290
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	245
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
BpuEI	CTTGAG	1 cut(s)	161
BsaHI	GRCGYC	2 cut(s)	129, 207
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	82, 252
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse21I	CCTNAGG	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	82, 252
BseGI	GGATG	4 cut(s)	78, 102, 198, 262
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	82
BseRI	GAGGAG	2 cut(s)	57, 183
Bsh1236I	CGCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	155
Bso31I	GGTCTC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	5 cut(s)	12, 99, 106, 126, 249
BspCNI	CTCAG	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	46, 290
BspTNI	GGTCTC	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	82, 252
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	2 cut(s)	129, 207
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	2 cut(s)	153, 269
BstACI	GRCGYC	2 cut(s)	129, 207
BstC8I	GCNNGC	4 cut(s)	99, 118, 228, 232
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	4 cut(s)	78, 102, 198, 262
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 126
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BstUI	CGCG	1 cut(s)	12
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
Bsu36I	CCTNAGG	1 cut(s)	68
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	4 cut(s)	78, 102, 198, 262
Cac8I	GCNNGC	4 cut(s)	99, 118, 228, 232
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	2 cut(s)	64, 288
CseI	GACGC	3 cut(s)	41, 118, 215
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	3 cut(s)	47, 97, 116
CviKI_1	RGCY	3 cut(s)	47, 97, 116
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	153, 269
EarI	CTCTTC	2 cut(s)	153, 269
EciI	GGCGGA	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	64, 288
Eco81I	CCTNAGG	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	188
EcoO109I	RGGNCCY	2 cut(s)	64, 288
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	256
FaiI	YATR	2 cut(s)	254, 267
FatI	CATG	1 cut(s)	252
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	13, 127
FokI	GGATG	4 cut(s)	65, 89, 185, 269
Fsp4HI	GCNGC	2 cut(s)	13, 127
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	2 cut(s)	13, 127
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	3 cut(s)	41, 118, 215
HhaI	GCGC	1 cut(s)	12
Hin1I	GRCGYC	2 cut(s)	129, 207
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HinfI	GANTC	2 cut(s)	171, 300
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	82, 238
Hpy188III	TCNNGA	3 cut(s)	178, 188, 190
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 126
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	2 cut(s)	129, 207
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	7 cut(s)	43, 55, 68, 95, 157, 178, 220
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	4 cut(s)	53, 203, 211, 244
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	3 cut(s)	170, 250, 286
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	9 cut(s)	14, 35, 77, 116, 161, 185, 270, 279, 302
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	2 cut(s)	21, 126
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	2 cut(s)	46, 290
NmuCI	GTSAC	4 cut(s)	53, 203, 211, 244
PaeR7I	CTCGAG	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	300
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	14, 128
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PpuMI	RGGWCCY	2 cut(s)	64, 288
Psp5II	RGGWCCY	2 cut(s)	64, 288
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	2 cut(s)	46, 290
PspPI	GGNCC	2 cut(s)	64, 288
PspPPI	RGGWCCY	2 cut(s)	64, 288
PsuI	RGATCY	1 cut(s)	180
PsyI	GACNNNGTC	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	251
SatI	GCNGC	2 cut(s)	13, 127
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	2 cut(s)	64, 288
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	2 cut(s)	66, 198
SfaNI	GCATC	1 cut(s)	96
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	2 cut(s)	64, 288
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	2 cut(s)	176, 188
SmoI	CTYRAG	2 cut(s)	176, 188
SsiI	CCGC	5 cut(s)	12, 99, 106, 126, 249
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	189
TauI	GCSGC	2 cut(s)	15, 129
TfiI	GAWTC	1 cut(s)	300
TseFI	GTSAC	4 cut(s)	53, 203, 211, 244
Tsp45I	GTSAC	4 cut(s)	53, 203, 211, 244
TspGWI	ACGGA	2 cut(s)	191, 312
Tth111I	GACNNNGTC	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	64, 288
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.