Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003498

Physical Location & Seq

Genomic Coordinates Forward (+)

5510777 .. 5511349

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G081300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCAGGACGAGGAAAGGGCGGTAAGGGTTTGGGCAAAGGGGGAGCCAAACGACATCGTAAGGTCCTCAGAGATAACATCCAGGGCATCACCAAGCCTGCGATTCGTCGTCTGGCTCGCAGAGGTGGTGTGAAGCGTATCAGTGGTCTGATCTACGAGGAGACCAGAGGCGTCCTCAAGATCTTTCTCGAGAATGTGATTCGTGATGCAGTGACTTACACTGAGCACGCCAGGAGGAAGACTGTGACCGCCATGGATGTGGTGTATGCTTTGAAGAGGCAGGGAAGGACCCTCTATGGTTTTGGGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044815 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

CENP-T_C

Protein Analysis

104

Amino Acids

11.41

Weight (kDa)

11.48

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07660
fragaria_vesca	FvH4_3g34560 FvH4_3g35181 FvH4_3g35183 FvH4_3g35220 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_6g14140 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20780
malus_domestica	MD01G1124600.v1.1 MD11G1117800.v1.1
prunus_persica	Prupe.2G232000_v2.0.a1 Prupe.2G232200_v2.0.a1 Prupe.5G134000_v2.0.a1 Prupe.6G081300_v2.0.a1 Prupe.6G251900_v2.0.a1 Prupe.7G028400_v2.0.a1
rosa_laevigata	RLG00000027349 RLG00000027452 RLG00000035544 RLG00000035615 RLG00000035618 RLG00000035660 RLG00000035661 RLG00000035663
rosa_multiflora	Rmu_sc0005638.1_g000004 Rmu_ssc0000250.1_g000014 Rmu_ssc0000309.1_g000042 Rmu_ssc0000309.1_g000043

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	21, 249
AcyI	GRCGYC	1 cut(s)	171
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	2 cut(s)	81, 230
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	188
AspS9I	GGNCC	2 cut(s)	64, 288
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	64, 288
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	228
BciT130I	CCWGG	2 cut(s)	83, 232
BcoDI	GTCTC	1 cut(s)	155
BglII	AGATCT	1 cut(s)	180
Bme1390I	CCNGG	2 cut(s)	83, 232
Bme18I	GGWCC	2 cut(s)	64, 288
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	64, 288
BmiI	GGNNCC	2 cut(s)	46, 290
BmrFI	CCNGG	2 cut(s)	83, 232
BmsI	GCATC	2 cut(s)	96, 196
BpiI	GAAGAC	1 cut(s)	245
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
BpuEI	CTTGAG	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	82, 252
BseBI	CCWGG	2 cut(s)	83, 232
BseDI	CCNNGG	2 cut(s)	82, 252
BseGI	GGATG	2 cut(s)	78, 262
BseMII	CTCAG	2 cut(s)	82, 213
BseRI	GAGGAG	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	155
Bso31I	GGTCTC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	150, 180
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	2 cut(s)	21, 249
BspCNI	CTCAG	2 cut(s)	81, 214
BspLI	GGNNCC	2 cut(s)	46, 290
BspTNI	GGTCTC	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	82, 252
BssMI	GATC	2 cut(s)	150, 180
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	83, 232
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	3 cut(s)	99, 118, 228
BstDEI	CTNAG	2 cut(s)	68, 222
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	78, 262
BstKTI	GATC	2 cut(s)	153, 183
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	150, 180
BstNI	CCWGG	2 cut(s)	83, 232
BstSCI	CCNGG	2 cut(s)	81, 230
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	180
BstXI	CCANNNNNNTGG	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	78, 262
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	3 cut(s)	148, 216, 219
Cac8I	GCNNGC	3 cut(s)	99, 118, 228
Cfr13I	GGNCC	2 cut(s)	64, 288
CseI	GACGC	1 cut(s)	160
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	3 cut(s)	47, 97, 116
CviKI_1	RGCY	3 cut(s)	47, 97, 116
DdeI	CTNAG	2 cut(s)	68, 222
DpnI	GATC	2 cut(s)	152, 182
DpnII	GATC	2 cut(s)	150, 180
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	64, 288
Eco88I	CYCGRG	1 cut(s)	188
EcoO109I	RGGNCCY	2 cut(s)	64, 288
EcoRII	CCWGG	2 cut(s)	81, 230
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	256
FaiI	YATR	3 cut(s)	254, 267, 297
FatI	CATG	1 cut(s)	252
FokI	GGATG	2 cut(s)	65, 269
HgaI	GACGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	256
HinfI	GANTC	2 cut(s)	103, 199
HphI	GGTGA	1 cut(s)	82
Hpy188I	TCNGA	2 cut(s)	71, 150
Hpy188III	TCNNGA	5 cut(s)	6, 178, 188, 190, 203
Hpy99I	CGWCG	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	1 cut(s)	209
HpyF3I	CTNAG	2 cut(s)	68, 222
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	150, 180
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	8 cut(s)	68, 95, 98, 111, 178, 217, 244, 266
LweI	GCATC	2 cut(s)	96, 196
MaeIII	GTNAC	2 cut(s)	211, 244
MalI	GATC	2 cut(s)	152, 182
MboI	GATC	2 cut(s)	150, 180
MboII	GAAGA	2 cut(s)	250, 286
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	228
MnlI	CCTC	9 cut(s)	5, 77, 116, 151, 161, 185, 228, 270, 302
MslI	CAYNNNNRTG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	83, 232
MvaI	CCWGG	2 cut(s)	83, 232
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	2 cut(s)	150, 180
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	2 cut(s)	46, 290
NmuCI	GTSAC	2 cut(s)	211, 244
PaeR7I	CTCGAG	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	103, 199
PpuMI	RGGWCCY	2 cut(s)	64, 288
Psp5II	RGGWCCY	2 cut(s)	64, 288
Psp6I	CCWGG	2 cut(s)	81, 230
PspGI	CCWGG	2 cut(s)	81, 230
PspN4I	GGNNCC	2 cut(s)	46, 290
PspPI	GGNCC	2 cut(s)	64, 288
PspPPI	RGGWCCY	2 cut(s)	64, 288
PsuI	RGATCY	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	257
Sau3AI	GATC	2 cut(s)	150, 180
Sau96I	GGNCC	2 cut(s)	64, 288
ScrFI	CCNGG	2 cut(s)	83, 232
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	2 cut(s)	66, 127
SfaNI	GCATC	2 cut(s)	96, 196
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	2 cut(s)	64, 288
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	176, 188
SmoI	CTYRAG	2 cut(s)	176, 188
SsiI	CCGC	2 cut(s)	21, 249
StyD4I	CCNGG	2 cut(s)	81, 230
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	244
TaqI	TCGA	1 cut(s)	189
TfiI	GAWTC	2 cut(s)	103, 199
TscAI	CASTG	3 cut(s)	148, 216, 226
TseFI	GTSAC	2 cut(s)	211, 244
Tsp45I	GTSAC	2 cut(s)	211, 244
TspRI	CASTG	3 cut(s)	148, 216, 226
VpaK11BI	GGWCC	2 cut(s)	64, 288
XhoI	CTCGAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.