Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003498

Physical Location & Seq

Genomic Coordinates Reverse (-)

69937024 .. 69937335

Gene Structure 312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035660

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCAGGGCGTGGTAAGGGAGGCAAGGGATTGGGCAAAGGAGGAGCCAAGCGTCACAGGAAGGTTCTGAGGGATAACATCCAGGGCATCACCAAGCCCGCCATTCGCCGTTTGGCTCGCAGAGGCGGCGTCAAGCGTATCTCCGGTCTCATCTACGAAGAGACCCGAGGTGTCCTCAAGATCTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACACCGAGCATGCCCGGAGGAAGACCGTCACTGCCATGGATGTCGTCTATGCCTTGAAAAGGCAGGGAAGGACCCTCTATGGGTTTGGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044815 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

CENP-T_C

Protein Analysis

104

Amino Acids

11.41

Weight (kDa)

11.48

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-T_C	PF15511	44 - 96	3.4e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07660
fragaria_vesca	FvH4_3g34560 FvH4_3g35181 FvH4_3g35183 FvH4_3g35220 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_6g14140 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20780
malus_domestica	MD01G1124600.v1.1 MD11G1117800.v1.1
prunus_persica	Prupe.2G232000_v2.0.a1 Prupe.2G232200_v2.0.a1 Prupe.5G134000_v2.0.a1 Prupe.6G081300_v2.0.a1 Prupe.6G251900_v2.0.a1 Prupe.7G028400_v2.0.a1
rosa_laevigata	RLG00000027349 RLG00000027452 RLG00000035544 RLG00000035615 RLG00000035618 RLG00000035660 RLG00000035661 RLG00000035663
rosa_multiflora	Rmu_sc0005638.1_g000004 Rmu_ssc0000250.1_g000014 Rmu_ssc0000309.1_g000042 Rmu_ssc0000309.1_g000043

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	99, 126
AcyI	GRCGYC	2 cut(s)	129, 207
AfiI	CCNNNNNNNGG	2 cut(s)	276, 297
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	152, 155
Ama87I	CYCGRG	2 cut(s)	165, 188
AspS9I	GGNCC	1 cut(s)	288
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	2 cut(s)	82, 205
AvaI	CYCGRG	2 cut(s)	165, 188
AvaII	GGWCC	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	245
BceAI	ACGGC	2 cut(s)	93, 194
BciT130I	CCWGG	1 cut(s)	83
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	152, 155
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	2 cut(s)	83, 232
Bme18I	GGWCC	1 cut(s)	288
BmeT110I	CYCGRG	2 cut(s)	165, 188
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	2 cut(s)	46, 290
BmrFI	CCNGG	2 cut(s)	83, 232
BmsI	GCATC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	245
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	232
BsaHI	GRCGYC	2 cut(s)	129, 207
BsaI	GGTCTC	2 cut(s)	152, 155
BsaJI	CCNNGG	3 cut(s)	82, 166, 252
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 297
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	3 cut(s)	82, 166, 252
BseGI	GGATG	3 cut(s)	78, 198, 262
BseLI	CCNNNNNNNGG	2 cut(s)	276, 297
BseMII	CTCAG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	57
BsiHKCI	CYCGRG	2 cut(s)	165, 188
BsiSI	CCGG	2 cut(s)	144, 232
BslI	CCNNNNNNNGG	2 cut(s)	276, 297
BsmAI	GTCTC	2 cut(s)	152, 155
Bso31I	GGTCTC	2 cut(s)	152, 155
BsoBI	CYCGRG	2 cut(s)	165, 188
Bsp143I	GATC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	2 cut(s)	99, 126
BspCNI	CTCAG	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	46, 290
BspTNI	GGTCTC	2 cut(s)	152, 155
BssECI	CCNNGG	3 cut(s)	82, 166, 252
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	2 cut(s)	129, 207
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	2 cut(s)	129, 207
BstC8I	GCNNGC	3 cut(s)	99, 118, 228
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	252
BstENI	CCTNNNNNAGG	1 cut(s)	274
BstF5I	GGATG	3 cut(s)	78, 198, 262
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	2 cut(s)	152, 155
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	81, 230
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	3 cut(s)	78, 198, 262
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	3 cut(s)	99, 118, 228
Cfr13I	GGNCC	1 cut(s)	288
CseI	GACGC	3 cut(s)	41, 118, 215
CviAII	CATG	2 cut(s)	227, 253
CviJI	RGCY	3 cut(s)	47, 97, 116
CviKI_1	RGCY	3 cut(s)	47, 97, 116
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	252
Eco31I	GGTCTC	2 cut(s)	152, 155
Eco47I	GGWCC	1 cut(s)	288
Eco88I	CYCGRG	2 cut(s)	165, 188
EcoNI	CCTNNNNNAGG	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	2 cut(s)	230, 256
FaiI	YATR	4 cut(s)	228, 254, 267, 297
FatI	CATG	2 cut(s)	226, 252
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	1 cut(s)	127
FokI	GGATG	3 cut(s)	65, 185, 269
Fsp4HI	GCNGC	1 cut(s)	127
GluI	GCNGC	1 cut(s)	127
HapII	CCGG	2 cut(s)	144, 232
HgaI	GACGC	3 cut(s)	41, 118, 215
Hin1I	GRCGYC	2 cut(s)	129, 207
Hin1II	CATG	2 cut(s)	230, 256
HpaII	CCGG	2 cut(s)	144, 232
HphI	GGTGA	2 cut(s)	82, 205
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	2 cut(s)	178, 190
HpyAV	CCTTC	2 cut(s)	55, 279
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	2 cut(s)	129, 207
Hsp92II	CATG	2 cut(s)	230, 256
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	6 cut(s)	43, 68, 95, 157, 245, 266
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	4 cut(s)	53, 203, 211, 244
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	3 cut(s)	170, 175, 250
MflI	RGATCY	1 cut(s)	180
MnlI	CCTC	9 cut(s)	14, 35, 63, 116, 161, 185, 197, 228, 302
MseI	TTAA	1 cut(s)	310
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	2 cut(s)	144, 232
MspR9I	CCNGG	2 cut(s)	83, 232
MvaI	CCWGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	126
NciI	CCSGG	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	2 cut(s)	230, 256
NlaIV	GGNNCC	2 cut(s)	46, 290
NmuCI	GTSAC	4 cut(s)	53, 203, 211, 244
NspI	RCATGY	1 cut(s)	230
PaeI	GCATGC	1 cut(s)	230
PaeR7I	CTCGAG	1 cut(s)	188
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	128
PpuMI	RGGWCCY	1 cut(s)	288
Psp5II	RGGWCCY	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	2 cut(s)	46, 290
PspPI	GGNCC	1 cut(s)	288
PspPPI	RGGWCCY	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	180
PsyI	GACNNNGTC	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	310
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	288
ScrFI	CCNGG	2 cut(s)	83, 232
SetI	ASST	4 cut(s)	66, 172, 198, 218
SfaNI	GCATC	1 cut(s)	96
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	288
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	2 cut(s)	176, 188
SmoI	CTYRAG	2 cut(s)	176, 188
SphI	GCATGC	1 cut(s)	230
SsiI	CCGC	2 cut(s)	99, 126
StyD4I	CCNGG	2 cut(s)	81, 230
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	189
TauI	GCSGC	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	310
Tru9I	TTAA	1 cut(s)	310
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	4 cut(s)	53, 203, 211, 244
Tsp45I	GTSAC	4 cut(s)	53, 203, 211, 244
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	1 cut(s)	253
Tth111I	GACNNNGTC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	288
XagI	CCTNNNNNAGG	1 cut(s)	274
XceI	RCATGY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.