Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003498

Physical Location & Seq

Genomic Coordinates Forward (+)

30381911 .. 30382549

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCAGGCCGCGGCAAAGGAGGCAAGGGATTGGGAAAGGGAGGAGCCAAGCGTCACAGGAAGGTCCTCAGGGATAACATCCAGGGCATCACCAAGCCCGCCATTCGCCGTCTCGCTCGCCGTGGCGGCGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGACTCGTGGTGTCCTCAAGATATTCCTCGAGAACGTCATCCGTGACGCTGTTACTTACACTGAGCACGCCCGCAGGAAGACCGTCACCGCCATGGATGTCGTCTATGCTCTCAAGAGGCAGGGAAGGACCCTCTACGGATTCGGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044815 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

CENP-T_C

Protein Analysis

104

Amino Acids

11.41

Weight (kDa)

11.48

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-T_C	PF15511	44 - 96	3.4e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07660
fragaria_vesca	FvH4_3g34560 FvH4_3g35181 FvH4_3g35183 FvH4_3g35220 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_6g14140 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20780
malus_domestica	MD01G1124600.v1.1 MD11G1117800.v1.1
prunus_persica	Prupe.2G232000_v2.0.a1 Prupe.2G232200_v2.0.a1 Prupe.5G134000_v2.0.a1 Prupe.6G081300_v2.0.a1 Prupe.6G251900_v2.0.a1 Prupe.7G028400_v2.0.a1
rosa_laevigata	RLG00000027349 RLG00000027452 RLG00000035544 RLG00000035615 RLG00000035618 RLG00000035660 RLG00000035661 RLG00000035663
rosa_multiflora	Rmu_sc0005638.1_g000004 Rmu_ssc0000250.1_g000014 Rmu_ssc0000309.1_g000042 Rmu_ssc0000309.1_g000043

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	12
AciI	CCGC	6 cut(s)	10, 12, 99, 126, 232, 249
AcyI	GRCGYC	1 cut(s)	129
AjnI	CCWGG	1 cut(s)	81
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	3 cut(s)	116, 152, 155
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	64, 288
AsuHPI	GGTGA	2 cut(s)	82, 238
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	64, 288
AxyI	CCTNAGG	1 cut(s)	68
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	228
BceAI	ACGGC	2 cut(s)	93, 105
BciT130I	CCWGG	1 cut(s)	83
BcoDI	GTCTC	3 cut(s)	116, 152, 155
BglI	GCCNNNNNGGC	1 cut(s)	126
BisI	GCNGC	3 cut(s)	10, 13, 127
BlsI	GCNGC	3 cut(s)	11, 14, 128
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	2 cut(s)	64, 288
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	64, 288
BmiI	GGNNCC	2 cut(s)	46, 290
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	245
BpuEI	CTTGAG	2 cut(s)	161, 257
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	4 cut(s)	10, 82, 121, 252
BsaWI	WCCGGW	1 cut(s)	143
Bse21I	CCTNAGG	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	4 cut(s)	10, 82, 121, 252
BseGI	GGATG	3 cut(s)	78, 198, 262
BseMII	CTCAG	2 cut(s)	82, 213
BseRI	GAGGAG	2 cut(s)	57, 173
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	144
BsmAI	GTCTC	3 cut(s)	116, 152, 155
BsmBI	CGTCTC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	9
Bso31I	GGTCTC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	6 cut(s)	10, 12, 99, 126, 232, 249
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	2 cut(s)	81, 214
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	46, 290
BspTNI	GGTCTC	1 cut(s)	152
BssECI	CCNNGG	4 cut(s)	10, 82, 121, 252
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	244
BstACI	GRCGYC	1 cut(s)	129
BstC8I	GCNNGC	4 cut(s)	99, 118, 228, 232
BstDEI	CTNAG	2 cut(s)	68, 222
BstDSI	CCRYGG	3 cut(s)	10, 121, 252
BstF5I	GGATG	3 cut(s)	78, 198, 262
BstFNI	CGCG	1 cut(s)	12
BstMAI	GTCTC	3 cut(s)	116, 152, 155
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 126
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BstUI	CGCG	1 cut(s)	12
BstV2I	GAAGAC	1 cut(s)	245
Bsu36I	CCTNAGG	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	9
BtgI	CCRYGG	3 cut(s)	10, 121, 252
BtsCI	GGATG	3 cut(s)	78, 198, 262
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	4 cut(s)	99, 118, 228, 232
Cfr13I	GGNCC	2 cut(s)	64, 288
Cfr42I	CCGCGG	1 cut(s)	13
CseI	GACGC	3 cut(s)	41, 118, 215
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	3 cut(s)	9, 47, 97
CviKI_1	RGCY	3 cut(s)	9, 47, 97
DdeI	CTNAG	2 cut(s)	68, 222
Eco130I	CCWWGG	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	2 cut(s)	64, 288
Eco81I	CCTNAGG	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	188
EcoO109I	RGGNCCY	2 cut(s)	64, 288
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	1 cut(s)	256
FaiI	YATR	2 cut(s)	254, 267
FatI	CATG	1 cut(s)	252
FauI	CCCGC	2 cut(s)	106, 239
Fnu4HI	GCNGC	3 cut(s)	10, 13, 127
FokI	GGATG	3 cut(s)	65, 185, 269
Fsp4HI	GCNGC	3 cut(s)	10, 13, 127
GluI	GCNGC	3 cut(s)	10, 13, 127
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	3 cut(s)	41, 118, 215
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	256
HinfI	GANTC	2 cut(s)	163, 300
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	82, 238
Hpy188III	TCNNGA	3 cut(s)	178, 190, 274
HpyAV	CCTTC	2 cut(s)	55, 279
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 126
HpyF3I	CTNAG	2 cut(s)	68, 222
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	256
KspI	CCGCGG	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	7 cut(s)	43, 55, 68, 95, 157, 220, 266
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	4 cut(s)	53, 203, 211, 244
MboII	GAAGA	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	8 cut(s)	14, 35, 77, 151, 185, 197, 270, 302
MslI	CAYNNNNRTG	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	12
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	2 cut(s)	21, 126
NcoI	CCATGG	1 cut(s)	252
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	2 cut(s)	46, 290
NmuCI	GTSAC	3 cut(s)	53, 203, 244
PaeR7I	CTCGAG	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	300
PkrI	GCNGC	3 cut(s)	11, 14, 128
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PpuMI	RGGWCCY	2 cut(s)	64, 288
Psp5II	RGGWCCY	2 cut(s)	64, 288
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	2 cut(s)	46, 290
PspPI	GGNCC	2 cut(s)	64, 288
PspPPI	RGGWCCY	2 cut(s)	64, 288
RseI	CAYNNNNRTG	1 cut(s)	251
SacII	CCGCGG	1 cut(s)	13
SatI	GCNGC	3 cut(s)	10, 13, 127
Sau96I	GGNCC	2 cut(s)	64, 288
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	2 cut(s)	66, 198
SfaNI	GCATC	1 cut(s)	96
Sfr274I	CTCGAG	1 cut(s)	188
Sfr303I	CCGCGG	1 cut(s)	13
SgrBI	CCGCGG	1 cut(s)	13
SinI	GGWCC	2 cut(s)	64, 288
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	3 cut(s)	176, 188, 272
SmoI	CTYRAG	3 cut(s)	176, 188, 272
SsiI	CCGC	6 cut(s)	10, 12, 99, 126, 232, 249
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	189
TauI	GCSGC	3 cut(s)	12, 15, 129
TfiI	GAWTC	1 cut(s)	300
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	3 cut(s)	53, 203, 244
Tsp45I	GTSAC	3 cut(s)	53, 203, 244
TspGWI	ACGGA	2 cut(s)	191, 312
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	2 cut(s)	64, 288
XhoI	CTCGAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.