Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003498

Physical Location & Seq

Genomic Coordinates Reverse (-)

16829640 .. 16829951

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g20780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCTGGGCGTGGAAAGGGAGGCAAGGGACTGGGAAAGGGAGGAGCAAAACGACACCGTAAGGTCCTCCGTGACAATATTCAGGGTATCACTAAGCCGGCCATACGTCGGTTGGCTCGCAGAGGAGGAGTCAAGCGTATCAGTGGCTTGATTTATGAGGAAACAAGAGGGGTGCTCAAGATTTTTCTTGAGAATGTGATCAGAGACGCCGTGACCTACACTGAGCACGCTCGCCGCAAGACTGTGACTGCCATGGATGTGGTGTATGCGTTGAAGAGGCAAGGCAGGACTCTGTATGGGTTTGGTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044815 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

CENP-T_C

Protein Analysis

104

Amino Acids

11.41

Weight (kDa)

11.48

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-T_C	PF15511	44 - 96	3.4e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07660
fragaria_vesca	FvH4_3g34560 FvH4_3g35181 FvH4_3g35183 FvH4_3g35220 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_6g14140 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20780
malus_domestica	MD01G1124600.v1.1 MD11G1117800.v1.1
prunus_persica	Prupe.2G232000_v2.0.a1 Prupe.2G232200_v2.0.a1 Prupe.5G134000_v2.0.a1 Prupe.6G081300_v2.0.a1 Prupe.6G251900_v2.0.a1 Prupe.7G028400_v2.0.a1
rosa_laevigata	RLG00000027349 RLG00000027452 RLG00000035544 RLG00000035615 RLG00000035618 RLG00000035660 RLG00000035661 RLG00000035663
rosa_multiflora	Rmu_sc0005638.1_g000004 Rmu_ssc0000250.1_g000014 Rmu_ssc0000309.1_g000042 Rmu_ssc0000309.1_g000043

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	235
AcoI	YGGCCR	1 cut(s)	99
AcyI	GRCGYC	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	274
Alw21I	GWGCWC	2 cut(s)	177, 228
Alw26I	GTCTC	1 cut(s)	198
AoxI	GGCC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	64
Bbv12I	GWGCWC	2 cut(s)	177, 228
BceAI	ACGGC	1 cut(s)	194
BclI	TGATCA	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	310
BisI	GCNGC	1 cut(s)	235
BlsI	GCNGC	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmrI	ACTGGG	1 cut(s)	41
BmuI	ACTGGG	1 cut(s)	41
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
BpuEI	CTTGAG	2 cut(s)	161, 209
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	3 cut(s)	57, 138, 141
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	2 cut(s)	177, 228
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	198
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	101
Bsp1286I	GDGCHC	2 cut(s)	177, 228
Bsp143I	GATC	1 cut(s)	198
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	36
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	198
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	252
Bst4CI	ACNGT	2 cut(s)	59, 244
Bst6I	CTCTTC	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	4 cut(s)	99, 118, 228, 232
BstDEI	CTNAG	2 cut(s)	93, 222
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	1 cut(s)	201
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	198
BstXI	CCANNNNNNTGG	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	148, 219
Cac8I	GCNNGC	4 cut(s)	99, 118, 228, 232
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	1 cut(s)	215
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	5 cut(s)	97, 101, 116, 147, 309
CviKI_1	RGCY	5 cut(s)	97, 101, 116, 147, 309
DdeI	CTNAG	2 cut(s)	93, 222
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	1 cut(s)	256
FaiI	YATR	5 cut(s)	104, 156, 254, 267, 297
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	1 cut(s)	252
FbaI	TGATCA	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	235
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	235
FspBI	CTAG	1 cut(s)	310
GluI	GCNGC	1 cut(s)	235
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	256
HinfI	GANTC	2 cut(s)	129, 289
HpaII	CCGG	1 cut(s)	98
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	2 cut(s)	178, 188
Hpy99I	CGWCG	1 cut(s)	111
HpyCH4III	ACNGT	2 cut(s)	59, 244
HpyCH4IV	ACGT	1 cut(s)	106
HpyF3I	CTNAG	2 cut(s)	93, 222
HpySE526I	ACGT	1 cut(s)	106
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	256
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	4 cut(s)	17, 68, 111, 271
MaeI	CTAG	1 cut(s)	310
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	3 cut(s)	71, 211, 244
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	177, 228
MlyI	GAGTC	2 cut(s)	138, 283
MnlI	CCTC	8 cut(s)	14, 35, 77, 116, 119, 151, 161, 270
MroNI	GCCGGC	1 cut(s)	97
MslI	CAYNNNNRTG	1 cut(s)	257
MspI	CCGG	1 cut(s)	98
NaeI	GCCGGC	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	1 cut(s)	198
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	256
NmuCI	GTSAC	3 cut(s)	71, 211, 244
PdiI	GCCGGC	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	236
PleI	GAGTC	2 cut(s)	137, 283
PpsI	GAGTC	2 cut(s)	137, 283
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	64
PspPPI	RGGWCCY	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	257
SatI	GCNGC	1 cut(s)	235
Sau3AI	GATC	1 cut(s)	198
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	2 cut(s)	138, 283
SduI	GDGCHC	2 cut(s)	177, 228
SetI	ASST	3 cut(s)	66, 109, 218
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	176, 188
SmoI	CTYRAG	2 cut(s)	176, 188
SsiI	CCGC	1 cut(s)	235
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	59, 244
TaiI	ACGT	1 cut(s)	109
TauI	GCSGC	1 cut(s)	237
TscAI	CASTG	2 cut(s)	148, 226
TseFI	GTSAC	3 cut(s)	71, 211, 244
Tsp45I	GTSAC	3 cut(s)	71, 211, 244
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	2 cut(s)	148, 226
VpaK11BI	GGWCC	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XspI	CTAG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.