Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G07660 |
| fragaria_vesca | FvH4_3g34560 FvH4_3g35181 FvH4_3g35183 FvH4_3g35220 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_6g14140 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20780 |
| malus_domestica | MD01G1124600.v1.1 MD11G1117800.v1.1 |
| prunus_persica | Prupe.2G232000_v2.0.a1 Prupe.2G232200_v2.0.a1 Prupe.5G134000_v2.0.a1 Prupe.6G081300_v2.0.a1 Prupe.6G251900_v2.0.a1 Prupe.7G028400_v2.0.a1 |
| rosa_laevigata | RLG00000027349 RLG00000027452 RLG00000035544 RLG00000035615 RLG00000035618 RLG00000035660 RLG00000035661 RLG00000035663 |
| rosa_multiflora | Rmu_sc0005638.1_g000004 Rmu_ssc0000250.1_g000014 Rmu_ssc0000309.1_g000042 Rmu_ssc0000309.1_g000043 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 204 |
| AciI | CCGC | 3 cut(s) | 99, 126, 144 |
| AjnI | CCWGG | 1 cut(s) | 230 |
| Alw21I | GWGCWC | 1 cut(s) | 228 |
| AoxI | GGCC | 1 cut(s) | 145 |
| AspLEI | GCGC | 1 cut(s) | 138 |
| AsuHPI | GGTGA | 2 cut(s) | 82, 256 |
| AsuII | TTCGAA | 1 cut(s) | 106 |
| BbsI | GAAGAC | 2 cut(s) | 115, 245 |
| Bbv12I | GWGCWC | 1 cut(s) | 228 |
| BbvCI | CCTCAGC | 1 cut(s) | 68 |
| BciT130I | CCWGG | 1 cut(s) | 232 |
| BglII | AGATCT | 1 cut(s) | 180 |
| BisI | GCNGC | 1 cut(s) | 145 |
| BlsI | GCNGC | 1 cut(s) | 146 |
| Bme1390I | CCNGG | 1 cut(s) | 232 |
| BmrFI | CCNGG | 1 cut(s) | 232 |
| BmsI | GCATC | 3 cut(s) | 96, 147, 196 |
| BpiI | GAAGAC | 2 cut(s) | 115, 245 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 159, 191 |
| Bpu10I | CCTNAGC | 1 cut(s) | 68 |
| Bpu14I | TTCGAA | 1 cut(s) | 106 |
| BpuEI | CTTGAG | 2 cut(s) | 161, 257 |
| BsaJI | CCNNGG | 2 cut(s) | 82, 252 |
| BseBI | CCWGG | 1 cut(s) | 232 |
| BseDI | CCNNGG | 2 cut(s) | 82, 252 |
| BseGI | GGATG | 2 cut(s) | 78, 262 |
| BseMII | CTCAG | 2 cut(s) | 59, 213 |
| Bsh1236I | CGCG | 1 cut(s) | 204 |
| BshFI | GGCC | 1 cut(s) | 147 |
| BsiHKAI | GWGCWC | 1 cut(s) | 228 |
| BslFI | GGGAC | 1 cut(s) | 297 |
| BsmFI | GGGAC | 1 cut(s) | 297 |
| BsnI | GGCC | 1 cut(s) | 147 |
| Bsp119I | TTCGAA | 1 cut(s) | 106 |
| Bsp1286I | GDGCHC | 1 cut(s) | 228 |
| Bsp143I | GATC | 1 cut(s) | 180 |
| Bsp19I | CCATGG | 1 cut(s) | 252 |
| Bsp68I | TCGCGA | 1 cut(s) | 204 |
| BspACI | CCGC | 3 cut(s) | 99, 126, 144 |
| BspANI | GGCC | 1 cut(s) | 147 |
| BspCNI | CTCAG | 2 cut(s) | 60, 214 |
| BspFNI | CGCG | 1 cut(s) | 204 |
| BspT104I | TTCGAA | 1 cut(s) | 106 |
| BssECI | CCNNGG | 2 cut(s) | 82, 252 |
| BssMI | GATC | 1 cut(s) | 180 |
| BssT1I | CCWWGG | 2 cut(s) | 82, 252 |
| Bst2UI | CCWGG | 1 cut(s) | 232 |
| Bst4CI | ACNGT | 1 cut(s) | 244 |
| Bst6I | CTCTTC | 1 cut(s) | 44 |
| BstBI | TTCGAA | 1 cut(s) | 106 |
| BstC8I | GCNNGC | 2 cut(s) | 99, 228 |
| BstDEI | CTNAG | 2 cut(s) | 68, 222 |
| BstDSI | CCRYGG | 1 cut(s) | 252 |
| BstF5I | GGATG | 2 cut(s) | 78, 262 |
| BstFNI | CGCG | 1 cut(s) | 204 |
| BstHHI | GCGC | 1 cut(s) | 138 |
| BstKTI | GATC | 1 cut(s) | 183 |
| BstMBI | GATC | 1 cut(s) | 180 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 144 |
| BstNI | CCWGG | 1 cut(s) | 232 |
| BstSCI | CCNGG | 1 cut(s) | 230 |
| BstUI | CGCG | 1 cut(s) | 204 |
| BstV2I | GAAGAC | 2 cut(s) | 115, 245 |
| BstX2I | RGATCY | 1 cut(s) | 180 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 259 |
| BstYI | RGATCY | 1 cut(s) | 180 |
| BsuRI | GGCC | 1 cut(s) | 147 |
| BtgI | CCRYGG | 1 cut(s) | 252 |
| BtgZI | GCGATG | 1 cut(s) | 219 |
| BtsCI | GGATG | 2 cut(s) | 78, 262 |
| BtsIMutI | CAGTG | 1 cut(s) | 219 |
| BtuMI | TCGCGA | 1 cut(s) | 204 |
| Cac8I | GCNNGC | 2 cut(s) | 99, 228 |
| CfoI | GCGC | 1 cut(s) | 138 |
| CviAII | CATG | 1 cut(s) | 253 |
| CviJI | RGCY | 2 cut(s) | 97, 147 |
| CviKI_1 | RGCY | 2 cut(s) | 97, 147 |
| DdeI | CTNAG | 2 cut(s) | 68, 222 |
| DpnI | GATC | 1 cut(s) | 182 |
| DpnII | GATC | 1 cut(s) | 180 |
| Eam1104I | CTCTTC | 1 cut(s) | 44 |
| EarI | CTCTTC | 1 cut(s) | 44 |
| EciI | GGCGGA | 1 cut(s) | 141 |
| Eco130I | CCWWGG | 2 cut(s) | 82, 252 |
| EcoRII | CCWGG | 1 cut(s) | 230 |
| EcoT14I | CCWWGG | 2 cut(s) | 82, 252 |
| ErhI | CCWWGG | 2 cut(s) | 82, 252 |
| FaeI | CATG | 1 cut(s) | 256 |
| FaiI | YATR | 3 cut(s) | 254, 267, 297 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 170, 202 |
| FaqI | GGGAC | 1 cut(s) | 297 |
| FatI | CATG | 1 cut(s) | 252 |
| FauI | CCCGC | 1 cut(s) | 106 |
| Fnu4HI | GCNGC | 1 cut(s) | 145 |
| FokI | GGATG | 2 cut(s) | 65, 269 |
| Fsp4HI | GCNGC | 1 cut(s) | 145 |
| GlaI | GCGC | 1 cut(s) | 137 |
| GluI | GCNGC | 1 cut(s) | 145 |
| HaeIII | GGCC | 1 cut(s) | 147 |
| HhaI | GCGC | 1 cut(s) | 138 |
| Hin1II | CATG | 1 cut(s) | 256 |
| Hin6I | GCGC | 1 cut(s) | 136 |
| HinP1I | GCGC | 1 cut(s) | 136 |
| HinfI | GANTC | 1 cut(s) | 199 |
| HphI | GGTGA | 2 cut(s) | 82, 256 |
| Hpy188I | TCNGA | 1 cut(s) | 305 |
| Hpy188III | TCNNGA | 3 cut(s) | 178, 203, 274 |
| HpyAV | CCTTC | 1 cut(s) | 55 |
| HpyCH4III | ACNGT | 1 cut(s) | 244 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 144 |
| HpyF3I | CTNAG | 2 cut(s) | 68, 222 |
| Hsp92II | CATG | 1 cut(s) | 256 |
| HspAI | GCGC | 1 cut(s) | 136 |
| Kzo9I | GATC | 1 cut(s) | 180 |
| LpnPI | CCDG | 5 cut(s) | 43, 178, 217, 244, 266 |
| LweI | GCATC | 3 cut(s) | 96, 147, 196 |
| MaeIII | GTNAC | 2 cut(s) | 211, 244 |
| MalI | GATC | 1 cut(s) | 182 |
| MboI | GATC | 1 cut(s) | 180 |
| MboII | GAAGA | 5 cut(s) | 61, 120, 170, 175, 250 |
| MflI | RGATCY | 1 cut(s) | 180 |
| MhlI | GDGCHC | 1 cut(s) | 228 |
| MseI | TTAA | 1 cut(s) | 310 |
| MslI | CAYNNNNRTG | 1 cut(s) | 257 |
| MspA1I | CMGCKG | 1 cut(s) | 144 |
| MspR9I | CCNGG | 1 cut(s) | 232 |
| MvaI | CCWGG | 1 cut(s) | 232 |
| MvnI | CGCG | 1 cut(s) | 204 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 144 |
| NcoI | CCATGG | 1 cut(s) | 252 |
| NdeII | GATC | 1 cut(s) | 180 |
| NlaIII | CATG | 1 cut(s) | 256 |
| NmuCI | GTSAC | 2 cut(s) | 211, 244 |
| NruI | TCGCGA | 1 cut(s) | 204 |
| NspV | TTCGAA | 1 cut(s) | 106 |
| PfeI | GAWTC | 1 cut(s) | 199 |
| PkrI | GCNGC | 1 cut(s) | 146 |
| Psp6I | CCWGG | 1 cut(s) | 230 |
| PspGI | CCWGG | 1 cut(s) | 230 |
| PsuI | RGATCY | 1 cut(s) | 180 |
| RruI | TCGCGA | 1 cut(s) | 204 |
| RseI | CAYNNNNRTG | 1 cut(s) | 257 |
| SaqAI | TTAA | 1 cut(s) | 310 |
| SatI | GCNGC | 1 cut(s) | 145 |
| Sau3AI | GATC | 1 cut(s) | 180 |
| ScrFI | CCNGG | 1 cut(s) | 232 |
| SduI | GDGCHC | 1 cut(s) | 228 |
| SetI | ASST | 2 cut(s) | 66, 310 |
| SfaNI | GCATC | 3 cut(s) | 96, 147, 196 |
| SfuI | TTCGAA | 1 cut(s) | 106 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 257 |
| SmlI | CTYRAG | 2 cut(s) | 176, 272 |
| SmoI | CTYRAG | 2 cut(s) | 176, 272 |
| SsiI | CCGC | 3 cut(s) | 99, 126, 144 |
| StyD4I | CCNGG | 1 cut(s) | 230 |
| StyI | CCWWGG | 2 cut(s) | 82, 252 |
| TaaI | ACNGT | 1 cut(s) | 244 |
| TaqI | TCGA | 1 cut(s) | 106 |
| TauI | GCSGC | 1 cut(s) | 147 |
| TfiI | GAWTC | 1 cut(s) | 199 |
| Tru1I | TTAA | 1 cut(s) | 310 |
| Tru9I | TTAA | 1 cut(s) | 310 |
| TscAI | CASTG | 1 cut(s) | 226 |
| TseFI | GTSAC | 2 cut(s) | 211, 244 |
| Tsp45I | GTSAC | 2 cut(s) | 211, 244 |
| TspRI | CASTG | 1 cut(s) | 226 |