Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003498

Physical Location & Seq

Genomic Coordinates Reverse (-)

25587953 .. 25588594

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G232200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCTGGCCGTGGAAAGGGAGGCAAGGGCCTGGGCAAGGGCGGAGCCAAACGGCACCGTAAGGTCCTTAGAGACAACATCCAGGGCATCACCAAGCCTGCGATTCGAAGGCTCGCCAGAAGAGGAGGCGTGAAGAGAATCAGCGGCCTCATCTACGAAGAGACCAGAGGTGTTCTCAAGATCTTCTTGGAGAACGTGATTCGCGACGCCGTGACCTACACCGAGCACGCTCGGAGGAAGACGGTGACCGCCATGGATGTTGTCTACGCGCTCAAGAGGCAGGGCAGGACCTTGTACGGATTCGGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044815 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

CENP-T_C

Protein Analysis

104

Amino Acids

11.41

Weight (kDa)

11.48

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07660
fragaria_vesca	FvH4_3g34560 FvH4_3g35181 FvH4_3g35183 FvH4_3g35220 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_6g14140 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20780
malus_domestica	MD01G1124600.v1.1 MD11G1117800.v1.1
prunus_persica	Prupe.2G232000_v2.0.a1 Prupe.2G232200_v2.0.a1 Prupe.5G134000_v2.0.a1 Prupe.6G081300_v2.0.a1 Prupe.6G251900_v2.0.a1 Prupe.7G028400_v2.0.a1
rosa_laevigata	RLG00000027349 RLG00000027452 RLG00000035544 RLG00000035615 RLG00000035618 RLG00000035660 RLG00000035661 RLG00000035663
rosa_multiflora	Rmu_sc0005638.1_g000004 Rmu_ssc0000250.1_g000014 Rmu_ssc0000309.1_g000042 Rmu_ssc0000309.1_g000043

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	264
AccII	CGCG	2 cut(s)	204, 269
AciI	CCGC	3 cut(s)	42, 144, 249
AcoI	YGGCCR	1 cut(s)	7
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	2 cut(s)	16, 37
AjnI	CCWGG	2 cut(s)	30, 81
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	2 cut(s)	66, 155
AoxI	GGCC	3 cut(s)	7, 28, 145
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	3 cut(s)	28, 64, 288
AsuHPI	GGTGA	2 cut(s)	82, 256
AsuII	TTCGAA	1 cut(s)	106
AvaII	GGWCC	2 cut(s)	64, 288
BanI	GGYRCC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	228
BceAI	ACGGC	2 cut(s)	68, 194
BciT130I	CCWGG	2 cut(s)	32, 83
BcoDI	GTCTC	2 cut(s)	66, 155
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
Bme1390I	CCNGG	2 cut(s)	32, 83
Bme18I	GGWCC	2 cut(s)	64, 288
BmgT120I	GGNCC	3 cut(s)	28, 64, 288
BmiI	GGNNCC	2 cut(s)	46, 56
BmrFI	CCNGG	2 cut(s)	32, 83
BmsI	GCATC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	245
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
Bpu14I	TTCGAA	1 cut(s)	106
BpuEI	CTTGAG	2 cut(s)	161, 257
BsaHI	GRCGYC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	4 cut(s)	10, 31, 82, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 37
BseBI	CCWGG	2 cut(s)	32, 83
BseDI	CCNNGG	4 cut(s)	10, 31, 82, 252
BseGI	GGATG	2 cut(s)	78, 262
BseLI	CCNNNNNNNGG	2 cut(s)	16, 37
BseRI	GAGGAG	1 cut(s)	138
Bsh1236I	CGCG	2 cut(s)	204, 269
BshFI	GGCC	3 cut(s)	9, 30, 147
BshNI	GGYRCC	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	228
BslI	CCNNNNNNNGG	2 cut(s)	16, 37
BsmAI	GTCTC	2 cut(s)	66, 155
BsnI	GGCC	3 cut(s)	9, 30, 147
Bso31I	GGTCTC	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	252
Bsp68I	TCGCGA	1 cut(s)	204
BspACI	CCGC	3 cut(s)	42, 144, 249
BspANI	GGCC	3 cut(s)	9, 30, 147
BspFNI	CGCG	2 cut(s)	204, 269
BspLI	GGNNCC	2 cut(s)	46, 56
BspT104I	TTCGAA	1 cut(s)	106
BspT107I	GGYRCC	1 cut(s)	54
BspTNI	GGTCTC	1 cut(s)	155
BssECI	CCNNGG	4 cut(s)	10, 31, 82, 252
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	32, 83
Bst4CI	ACNGT	2 cut(s)	59, 244
Bst6I	CTCTTC	3 cut(s)	115, 128, 153
BstACI	GRCGYC	1 cut(s)	207
BstBI	TTCGAA	1 cut(s)	106
BstC8I	GCNNGC	3 cut(s)	99, 114, 228
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	2 cut(s)	10, 252
BstEII	GGTNACC	1 cut(s)	244
BstENI	CCTNNNNNAGG	1 cut(s)	35
BstF5I	GGATG	2 cut(s)	78, 262
BstFNI	CGCG	2 cut(s)	204, 269
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	2 cut(s)	66, 155
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	2 cut(s)	32, 83
BstPI	GGTNACC	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	30, 81
BstUI	CGCG	2 cut(s)	204, 269
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	3 cut(s)	9, 30, 147
BtgI	CCRYGG	2 cut(s)	10, 252
BtsCI	GGATG	2 cut(s)	78, 262
BtuMI	TCGCGA	1 cut(s)	204
Cac8I	GCNNGC	3 cut(s)	99, 114, 228
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	3 cut(s)	28, 64, 288
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	6 cut(s)	9, 30, 47, 97, 112, 147
CviKI_1	RGCY	6 cut(s)	9, 30, 47, 97, 112, 147
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
EaeI	YGGCCR	1 cut(s)	7
Eam1104I	CTCTTC	3 cut(s)	115, 128, 153
EarI	CTCTTC	3 cut(s)	115, 128, 153
EciI	GGCGGA	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	64, 288
Eco91I	GGTNACC	1 cut(s)	244
EcoNI	CCTNNNNNAGG	1 cut(s)	35
EcoO109I	RGGNCCY	3 cut(s)	28, 64, 288
EcoO65I	GGTNACC	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	30, 81
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	256
FaiI	YATR	1 cut(s)	254
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FatI	CATG	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	2 cut(s)	65, 269
Fsp4HI	GCNGC	1 cut(s)	145
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	145
HaeIII	GGCC	3 cut(s)	9, 30, 147
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	4 cut(s)	103, 138, 199, 300
HphI	GGTGA	2 cut(s)	82, 256
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	3 cut(s)	178, 203, 274
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	102
HpyCH4III	ACNGT	2 cut(s)	59, 244
HpyCH4IV	ACGT	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	1 cut(s)	269
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	9 cut(s)	17, 44, 68, 95, 111, 130, 178, 266, 271
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	211, 244
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	5 cut(s)	132, 145, 170, 175, 250
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	228
MnlI	CCTC	7 cut(s)	14, 116, 119, 158, 161, 228, 270
MseI	TTAA	1 cut(s)	310
MspA1I	CMGCKG	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	32, 83
MvaI	CCWGG	2 cut(s)	32, 83
MvnI	CGCG	2 cut(s)	204, 269
MwoI	GCNNNNNNNGC	1 cut(s)	277
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	2 cut(s)	46, 56
NmuCI	GTSAC	2 cut(s)	211, 244
NruI	TCGCGA	1 cut(s)	204
NspV	TTCGAA	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	4 cut(s)	103, 138, 199, 300
PkrI	GCNGC	1 cut(s)	146
PpuMI	RGGWCCY	2 cut(s)	64, 288
Psp5II	RGGWCCY	2 cut(s)	64, 288
Psp6I	CCWGG	2 cut(s)	30, 81
PspEI	GGTNACC	1 cut(s)	244
PspGI	CCWGG	2 cut(s)	30, 81
PspN4I	GGNNCC	2 cut(s)	46, 56
PspPI	GGNCC	3 cut(s)	28, 64, 288
PspPPI	RGGWCCY	2 cut(s)	64, 288
PsuI	RGATCY	1 cut(s)	180
RruI	TCGCGA	1 cut(s)	204
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	310
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	3 cut(s)	28, 64, 288
ScrFI	CCNGG	2 cut(s)	32, 83
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	5 cut(s)	66, 172, 198, 218, 293
SfaNI	GCATC	1 cut(s)	96
SfuI	TTCGAA	1 cut(s)	106
SinI	GGWCC	2 cut(s)	64, 288
SmlI	CTYRAG	2 cut(s)	176, 272
SmoI	CTYRAG	2 cut(s)	176, 272
SsiI	CCGC	3 cut(s)	42, 144, 249
StyD4I	CCNGG	2 cut(s)	30, 81
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	59, 244
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	106
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	4 cut(s)	103, 138, 199, 300
Tru1I	TTAA	1 cut(s)	310
Tru9I	TTAA	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	211, 244
Tsp45I	GTSAC	2 cut(s)	211, 244
TspGWI	ACGGA	1 cut(s)	312
VpaK11BI	GGWCC	2 cut(s)	64, 288
XagI	CCTNNNNNAGG	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.