Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003498

Physical Location & Seq

Genomic Coordinates Forward (+)

68188634 .. 68188945

Gene Structure 312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035544

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCAGGCCGCGGCAAGGGAGGCAAGGGTTTGGGCAAAGGAGGAGCCAAGCGTCACAGGAAGGTCCTCCGCGATAACATCCAGGGCATCACCAAGCCCGCCATTCGCCGTTTGGCTCGCCGTGGCGGCGTCAAGCGTATCTCCGGCCTGATCTACGAGGAGACACGTGGCGTGCTCAAGATCTTTCTCGAGAACGTCATCCGTGACGCCGTCACTTACACTGAGCACGCTCGGAGGAAGACCGTCACCGCCATGGATGTGGTGTATGCGCTCAAGAGGCAAGGAAGGACTCTGTACGGGTTCGGGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044815 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

CENP-T_C

Protein Analysis

104

Amino Acids

11.41

Weight (kDa)

11.48

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-T_C	PF15511	44 - 96	3.4e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07660
fragaria_vesca	FvH4_3g34560 FvH4_3g35181 FvH4_3g35183 FvH4_3g35220 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_6g14140 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20780
malus_domestica	MD01G1124600.v1.1 MD11G1117800.v1.1
prunus_persica	Prupe.2G232000_v2.0.a1 Prupe.2G232200_v2.0.a1 Prupe.5G134000_v2.0.a1 Prupe.6G081300_v2.0.a1 Prupe.6G251900_v2.0.a1 Prupe.7G028400_v2.0.a1
rosa_laevigata	RLG00000027349 RLG00000027452 RLG00000035544 RLG00000035615 RLG00000035618 RLG00000035660 RLG00000035661 RLG00000035663
rosa_multiflora	Rmu_sc0005638.1_g000004 Rmu_ssc0000250.1_g000014 Rmu_ssc0000309.1_g000042 Rmu_ssc0000309.1_g000043

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	12, 72
AciI	CCGC	6 cut(s)	10, 12, 70, 99, 126, 249
AcvI	CACGTG	1 cut(s)	167
AcyI	GRCGYC	2 cut(s)	129, 207
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	81
Alw21I	GWGCWC	2 cut(s)	177, 228
Alw26I	GTCTC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	2 cut(s)	7, 145
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	2 cut(s)	82, 238
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	64
BbrPI	CACGTG	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	2 cut(s)	177, 228
BceAI	ACGGC	3 cut(s)	93, 105, 194
BciT130I	CCWGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	155
BglI	GCCNNNNNGGC	1 cut(s)	126
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	3 cut(s)	10, 13, 127
BlsI	GCNGC	3 cut(s)	11, 14, 128
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	245
BpuEI	CTTGAG	2 cut(s)	161, 257
BsaAI	YACGTR	1 cut(s)	167
BsaHI	GRCGYC	2 cut(s)	129, 207
BsaJI	CCNNGG	4 cut(s)	10, 82, 121, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	4 cut(s)	10, 82, 121, 252
BseGI	GGATG	3 cut(s)	78, 198, 262
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	213
BseRI	GAGGAG	2 cut(s)	57, 173
Bsh1236I	CGCG	2 cut(s)	12, 72
BshFI	GGCC	2 cut(s)	9, 147
BsiHKAI	GWGCWC	2 cut(s)	177, 228
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	2 cut(s)	9, 147
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	177, 228
Bsp143I	GATC	2 cut(s)	150, 180
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	6 cut(s)	10, 12, 70, 99, 126, 249
BspANI	GGCC	2 cut(s)	9, 147
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	2 cut(s)	12, 72
BspLI	GGNNCC	1 cut(s)	46
BssECI	CCNNGG	4 cut(s)	10, 82, 121, 252
BssMI	GATC	2 cut(s)	150, 180
BssNI	GRCGYC	2 cut(s)	129, 207
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	244
BstACI	GRCGYC	2 cut(s)	129, 207
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	4 cut(s)	99, 118, 173, 228
BstDEI	CTNAG	1 cut(s)	222
BstDSI	CCRYGG	3 cut(s)	10, 121, 252
BstF5I	GGATG	3 cut(s)	78, 198, 262
BstFNI	CGCG	2 cut(s)	12, 72
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	2 cut(s)	153, 183
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	150, 180
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 126, 277
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BstUI	CGCG	2 cut(s)	12, 72
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	180
BstXI	CCANNNNNNTGG	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	9, 147
BtgI	CCRYGG	3 cut(s)	10, 121, 252
BtsCI	GGATG	3 cut(s)	78, 198, 262
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	4 cut(s)	99, 118, 173, 228
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	64
Cfr42I	CCGCGG	1 cut(s)	13
CseI	GACGC	3 cut(s)	41, 118, 215
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	5 cut(s)	9, 47, 97, 116, 147
CviKI_1	RGCY	5 cut(s)	9, 47, 97, 116, 147
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	2 cut(s)	152, 182
DpnII	GATC	2 cut(s)	150, 180
Eco130I	CCWWGG	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	64
Eco72I	CACGTG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	256
FaiI	YATR	2 cut(s)	254, 267
FatI	CATG	1 cut(s)	252
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	3 cut(s)	10, 13, 127
FokI	GGATG	3 cut(s)	65, 185, 269
Fsp4HI	GCNGC	3 cut(s)	10, 13, 127
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	3 cut(s)	10, 13, 127
HaeIII	GGCC	2 cut(s)	9, 147
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	3 cut(s)	41, 118, 215
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	2 cut(s)	129, 207
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	82, 238
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	4 cut(s)	178, 188, 190, 274
HpyAV	CCTTC	2 cut(s)	55, 279
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	2 cut(s)	166, 195
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 126, 277
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	2 cut(s)	166, 195
Hsp92I	GRCGYC	2 cut(s)	129, 207
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	1 cut(s)	269
KspI	CCGCGG	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	150, 180
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	5 cut(s)	43, 68, 95, 157, 161
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	2 cut(s)	166, 195
MaeIII	GTNAC	4 cut(s)	53, 203, 211, 244
MalI	GATC	2 cut(s)	152, 182
MboI	GATC	2 cut(s)	150, 180
MboII	GAAGA	1 cut(s)	250
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	2 cut(s)	177, 228
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	6 cut(s)	14, 35, 77, 151, 228, 270
MslI	CAYNNNNRTG	2 cut(s)	251, 257
MspA1I	CMGCKG	1 cut(s)	12
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	2 cut(s)	12, 72
MwoI	GCNNNNNNNGC	3 cut(s)	21, 126, 277
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	2 cut(s)	150, 180
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	46
NmuCI	GTSAC	4 cut(s)	53, 203, 211, 244
PaeR7I	CTCGAG	1 cut(s)	188
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	3 cut(s)	11, 14, 128
PleI	GAGTC	1 cut(s)	283
PmaCI	CACGTG	1 cut(s)	167
PmlI	CACGTG	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	283
Ppu21I	YACGTR	1 cut(s)	167
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	81
PspCI	CACGTG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	64
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	180
PsyI	GACNNNGTC	1 cut(s)	209
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
RseI	CAYNNNNRTG	2 cut(s)	251, 257
SacII	CCGCGG	1 cut(s)	13
SatI	GCNGC	3 cut(s)	10, 13, 127
Sau3AI	GATC	2 cut(s)	150, 180
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	2 cut(s)	177, 228
SetI	ASST	3 cut(s)	66, 169, 198
SfaNI	GCATC	1 cut(s)	96
Sfr274I	CTCGAG	1 cut(s)	188
Sfr303I	CCGCGG	1 cut(s)	13
SgrBI	CCGCGG	1 cut(s)	13
SinI	GGWCC	1 cut(s)	64
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	2 cut(s)	251, 257
SmlI	CTYRAG	3 cut(s)	176, 188, 272
SmoI	CTYRAG	3 cut(s)	176, 188, 272
SsiI	CCGC	6 cut(s)	10, 12, 70, 99, 126, 249
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	2 cut(s)	169, 198
TaqI	TCGA	1 cut(s)	189
TauI	GCSGC	3 cut(s)	12, 15, 129
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	4 cut(s)	53, 203, 211, 244
Tsp45I	GTSAC	4 cut(s)	53, 203, 211, 244
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	1 cut(s)	226
Tth111I	GACNNNGTC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.