Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003498

Physical Location & Seq

Genomic Coordinates Forward (+)

10833443 .. 10833754

Gene Structure 312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027349

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCGGGTCGGGGCAAGGGCGGCAAGGGCCTGGGCAAAGGCGGAGCAAAACGACACCGTAAGGTCCTCCGCGACAACATCCAAGGCATCACCAAGCCCGCCATCCGCCGCCTCGCCCGCAGAGGCGGCGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGACCCGCGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGCCGAACCCTCTACGGCTTCGGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044815 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

CENP-T_C

Protein Analysis

104

Amino Acids

11.41

Weight (kDa)

11.48

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-T_C	PF15511	44 - 96	3.4e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07660
fragaria_vesca	FvH4_3g34560 FvH4_3g35181 FvH4_3g35183 FvH4_3g35220 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_6g14140 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20780
malus_domestica	MD01G1124600.v1.1 MD11G1117800.v1.1
prunus_persica	Prupe.2G232000_v2.0.a1 Prupe.2G232200_v2.0.a1 Prupe.5G134000_v2.0.a1 Prupe.6G081300_v2.0.a1 Prupe.6G251900_v2.0.a1 Prupe.7G028400_v2.0.a1
rosa_laevigata	RLG00000027349 RLG00000027452 RLG00000035544 RLG00000035615 RLG00000035618 RLG00000035660 RLG00000035661 RLG00000035663
rosa_multiflora	Rmu_sc0005638.1_g000004 Rmu_ssc0000250.1_g000014 Rmu_ssc0000309.1_g000042 Rmu_ssc0000309.1_g000043

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
AccI	GTMKAC	1 cut(s)	264
AccII	CGCG	3 cut(s)	72, 168, 204
AcyI	GRCGYC	4 cut(s)	129, 171, 207, 258
AjnI	CCWGG	2 cut(s)	30, 279
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	3 cut(s)	28, 145, 283
AspLEI	GCGC	2 cut(s)	138, 279
AspS9I	GGNCC	3 cut(s)	28, 64, 283
AsuHPI	GGTGA	3 cut(s)	82, 205, 238
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	228
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	194
BciT130I	CCWGG	2 cut(s)	32, 281
BcoDI	GTCTC	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	280
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	6 cut(s)	22, 109, 127, 145, 169, 235
BlsI	GCNGC	6 cut(s)	23, 110, 128, 146, 170, 236
Bme1390I	CCNGG	2 cut(s)	32, 281
Bme18I	GGWCC	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	3 cut(s)	28, 64, 283
BmrFI	CCNGG	2 cut(s)	32, 281
BmsI	GCATC	2 cut(s)	96, 147
BpuEI	CTTGAG	2 cut(s)	161, 257
BsaHI	GRCGYC	4 cut(s)	129, 171, 207, 258
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	5 cut(s)	31, 82, 166, 252, 280
BseBI	CCWGG	2 cut(s)	32, 281
BseDI	CCNNGG	5 cut(s)	31, 82, 166, 252, 280
BseGI	GGATG	3 cut(s)	78, 102, 198
BseRI	GAGGAG	1 cut(s)	173
Bsh1236I	CGCG	3 cut(s)	72, 168, 204
BshFI	GGCC	3 cut(s)	30, 147, 285
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	3 cut(s)	30, 147, 285
Bso31I	GGTCTC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	252
BspANI	GGCC	3 cut(s)	30, 147, 285
BspFNI	CGCG	3 cut(s)	72, 168, 204
BspTNI	GGTCTC	1 cut(s)	155
BssECI	CCNNGG	5 cut(s)	31, 82, 166, 252, 280
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	4 cut(s)	129, 171, 207, 258
BssT1I	CCWWGG	2 cut(s)	82, 252
Bst2UI	CCWGG	2 cut(s)	32, 281
Bst4CI	ACNGT	2 cut(s)	59, 244
BstACI	GRCGYC	4 cut(s)	129, 171, 207, 258
BstC8I	GCNNGC	4 cut(s)	99, 118, 228, 232
BstDSI	CCRYGG	2 cut(s)	166, 252
BstF5I	GGATG	3 cut(s)	78, 102, 198
BstFNI	CGCG	3 cut(s)	72, 168, 204
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	2 cut(s)	138, 279
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	6 cut(s)	21, 27, 117, 126, 135, 144
BstNI	CCWGG	2 cut(s)	32, 281
BstSCI	CCNGG	2 cut(s)	30, 279
BstUI	CGCG	3 cut(s)	72, 168, 204
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	3 cut(s)	30, 147, 285
BtgI	CCRYGG	2 cut(s)	166, 252
BtsCI	GGATG	3 cut(s)	78, 102, 198
Cac8I	GCNNGC	4 cut(s)	99, 118, 228, 232
CfoI	GCGC	2 cut(s)	138, 279
Cfr13I	GGNCC	3 cut(s)	28, 64, 283
Cfr42I	CCGCGG	1 cut(s)	169
CseI	GACGC	3 cut(s)	118, 160, 215
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	5 cut(s)	30, 97, 147, 285, 300
CviKI_1	RGCY	5 cut(s)	30, 97, 147, 285, 300
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
EciI	GGCGGA	2 cut(s)	57, 95
Eco130I	CCWWGG	2 cut(s)	82, 252
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	188
EcoO109I	RGGNCCY	2 cut(s)	28, 64
EcoRII	CCWGG	2 cut(s)	30, 279
EcoT14I	CCWWGG	2 cut(s)	82, 252
ErhI	CCWWGG	2 cut(s)	82, 252
FaeI	CATG	1 cut(s)	256
FaiI	YATR	1 cut(s)	254
FatI	CATG	1 cut(s)	252
FauI	CCCGC	4 cut(s)	106, 125, 173, 239
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	6 cut(s)	22, 109, 127, 145, 169, 235
FokI	GGATG	3 cut(s)	65, 89, 185
Fsp4HI	GCNGC	6 cut(s)	22, 109, 127, 145, 169, 235
GlaI	GCGC	2 cut(s)	137, 278
GluI	GCNGC	6 cut(s)	22, 109, 127, 145, 169, 235
HaeII	RGCGCY	1 cut(s)	280
HaeIII	GGCC	3 cut(s)	30, 147, 285
HgaI	GACGC	3 cut(s)	118, 160, 215
HhaI	GCGC	2 cut(s)	138, 279
Hin1I	GRCGYC	4 cut(s)	129, 171, 207, 258
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	2 cut(s)	136, 277
HinP1I	GCGC	2 cut(s)	136, 277
HphI	GGTGA	3 cut(s)	82, 205, 238
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188III	TCNNGA	2 cut(s)	178, 190
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	2 cut(s)	209, 263
HpyCH4III	ACNGT	2 cut(s)	59, 244
HpyCH4IV	ACGT	2 cut(s)	195, 258
HpyF10VI	GCNNNNNNNGC	6 cut(s)	21, 27, 117, 126, 135, 144
HpySE526I	ACGT	2 cut(s)	195, 258
Hsp92I	GRCGYC	4 cut(s)	129, 171, 207, 258
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	2 cut(s)	136, 277
KspI	CCGCGG	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	4 cut(s)	17, 44, 266, 293
LweI	GCATC	2 cut(s)	96, 147
MaeII	ACGT	2 cut(s)	195, 258
MaeIII	GTNAC	2 cut(s)	211, 244
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	1 cut(s)	175
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	228
MnlI	CCTC	9 cut(s)	77, 116, 122, 151, 158, 185, 197, 281, 302
MseI	TTAA	1 cut(s)	310
MslI	CAYNNNNRTG	1 cut(s)	251
MspA1I	CMGCKG	2 cut(s)	144, 168
MspR9I	CCNGG	2 cut(s)	32, 281
MvaI	CCWGG	2 cut(s)	32, 281
MvnI	CGCG	3 cut(s)	72, 168, 204
MwoI	GCNNNNNNNGC	6 cut(s)	21, 27, 117, 126, 135, 144
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	1 cut(s)	256
NmuCI	GTSAC	2 cut(s)	211, 244
PaeR7I	CTCGAG	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PflFI	GACNNNGTC	2 cut(s)	209, 260
PkrI	GCNGC	6 cut(s)	23, 110, 128, 146, 170, 236
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	2 cut(s)	30, 279
PspGI	CCWGG	2 cut(s)	30, 279
PspPI	GGNCC	3 cut(s)	28, 64, 283
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	180
PsyI	GACNNNGTC	2 cut(s)	209, 260
RseI	CAYNNNNRTG	1 cut(s)	251
SacII	CCGCGG	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	310
SatI	GCNGC	6 cut(s)	22, 109, 127, 145, 169, 235
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	3 cut(s)	28, 64, 283
ScrFI	CCNGG	2 cut(s)	32, 281
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	4 cut(s)	66, 198, 218, 261
SfaNI	GCATC	2 cut(s)	96, 147
Sfr274I	CTCGAG	1 cut(s)	188
Sfr303I	CCGCGG	1 cut(s)	169
SgrBI	CCGCGG	1 cut(s)	169
SinI	GGWCC	1 cut(s)	64
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	3 cut(s)	176, 188, 272
SmoI	CTYRAG	3 cut(s)	176, 188, 272
StyD4I	CCNGG	2 cut(s)	30, 279
StyI	CCWWGG	2 cut(s)	82, 252
TaaI	ACNGT	2 cut(s)	59, 244
TaiI	ACGT	2 cut(s)	198, 261
TaqI	TCGA	1 cut(s)	189
TauI	GCSGC	6 cut(s)	24, 111, 129, 147, 171, 237
Tru1I	TTAA	1 cut(s)	310
Tru9I	TTAA	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	211, 244
Tsp45I	GTSAC	2 cut(s)	211, 244
Tth111I	GACNNNGTC	2 cut(s)	209, 260
VpaK11BI	GGWCC	1 cut(s)	64
XhoI	CTCGAG	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	264
ZraI	GACGTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.