Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003498

Physical Location & Seq

Genomic Coordinates Reverse (-)

69944676 .. 69944987

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035663

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCAGGCCGCGGCAAGGGAGGCAAGGGTTTGGGCAAAGGAGGAGCCAAGCGTCACAGGAAGGTTCTTCGGGATAACATCCAGGGCATCACCAAACCCGCCATTCGCCGTTTGGCTCGCAGAGGCGGCGTCAAGCGTATCTCCGGTCTCATCTACGAAGAGACCAGAGGTGTCCTCAAGATCTTTCTCGAGAACGTCATCCGTGACGCCGTCACCTACACCGAACACGCCCGGAGGAAGACCGTCACCGCCATGGATGTCGTCTATGCTTTGAAGAGGCAAGGAAGGACTCTTTACGGATTTGGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044815 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

CENP-T_C

Protein Analysis

104

Amino Acids

11.41

Weight (kDa)

11.48

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-T_C	PF15511	44 - 96	3.4e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07660
fragaria_vesca	FvH4_3g34560 FvH4_3g35181 FvH4_3g35183 FvH4_3g35220 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_6g14140 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20780
malus_domestica	MD01G1124600.v1.1 MD11G1117800.v1.1
prunus_persica	Prupe.2G232000_v2.0.a1 Prupe.2G232200_v2.0.a1 Prupe.5G134000_v2.0.a1 Prupe.6G081300_v2.0.a1 Prupe.6G251900_v2.0.a1 Prupe.7G028400_v2.0.a1
rosa_laevigata	RLG00000027349 RLG00000027452 RLG00000035544 RLG00000035615 RLG00000035618 RLG00000035660 RLG00000035661 RLG00000035663
rosa_multiflora	Rmu_sc0005638.1_g000004 Rmu_ssc0000250.1_g000014 Rmu_ssc0000309.1_g000042 Rmu_ssc0000309.1_g000043

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	12
AciI	CCGC	5 cut(s)	10, 12, 99, 126, 249
AcyI	GRCGYC	2 cut(s)	129, 207
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	152, 155
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	3 cut(s)	82, 205, 238
AvaI	CYCGRG	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	245
BceAI	ACGGC	2 cut(s)	93, 194
BciT130I	CCWGG	1 cut(s)	83
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	152, 155
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	3 cut(s)	10, 13, 127
BlsI	GCNGC	3 cut(s)	11, 14, 128
Bme1390I	CCNGG	2 cut(s)	83, 232
BmeT110I	CYCGRG	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	2 cut(s)	83, 232
BmsI	GCATC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	245
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	232
BsaHI	GRCGYC	2 cut(s)	129, 207
BsaI	GGTCTC	2 cut(s)	152, 155
BsaJI	CCNNGG	3 cut(s)	10, 82, 252
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	3 cut(s)	10, 82, 252
BseGI	GGATG	3 cut(s)	78, 198, 262
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	57
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	144, 232
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	2 cut(s)	152, 155
BsnI	GGCC	1 cut(s)	9
Bso31I	GGTCTC	2 cut(s)	152, 155
BsoBI	CYCGRG	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	5 cut(s)	10, 12, 99, 126, 249
BspANI	GGCC	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	46
BspTNI	GGTCTC	2 cut(s)	152, 155
BssECI	CCNNGG	3 cut(s)	10, 82, 252
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	2 cut(s)	129, 207
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	2 cut(s)	153, 269
BstACI	GRCGYC	2 cut(s)	129, 207
BstC8I	GCNNGC	1 cut(s)	118
BstDSI	CCRYGG	2 cut(s)	10, 252
BstF5I	GGATG	3 cut(s)	78, 198, 262
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	2 cut(s)	152, 155
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 126
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	2 cut(s)	81, 230
BstUI	CGCG	1 cut(s)	12
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	9
BtgI	CCRYGG	2 cut(s)	10, 252
BtsCI	GGATG	3 cut(s)	78, 198, 262
Cac8I	GCNNGC	1 cut(s)	118
Cfr42I	CCGCGG	1 cut(s)	13
CseI	GACGC	3 cut(s)	41, 118, 215
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	3 cut(s)	9, 47, 116
CviKI_1	RGCY	3 cut(s)	9, 47, 116
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	153, 269
EarI	CTCTTC	2 cut(s)	153, 269
Eco130I	CCWWGG	1 cut(s)	252
Eco31I	GGTCTC	2 cut(s)	152, 155
Eco88I	CYCGRG	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	256
FaiI	YATR	2 cut(s)	254, 267
FatI	CATG	1 cut(s)	252
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	3 cut(s)	10, 13, 127
FokI	GGATG	3 cut(s)	65, 185, 269
Fsp4HI	GCNGC	3 cut(s)	10, 13, 127
GluI	GCNGC	3 cut(s)	10, 13, 127
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	2 cut(s)	144, 232
HgaI	GACGC	3 cut(s)	41, 118, 215
Hin1I	GRCGYC	2 cut(s)	129, 207
Hin1II	CATG	1 cut(s)	256
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	2 cut(s)	144, 232
HphI	GGTGA	3 cut(s)	82, 205, 238
Hpy188III	TCNNGA	4 cut(s)	71, 178, 188, 190
HpyAV	CCTTC	2 cut(s)	55, 279
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 126
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	2 cut(s)	129, 207
Hsp92II	CATG	1 cut(s)	256
KspI	CCGCGG	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	6 cut(s)	43, 68, 95, 157, 178, 245
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	4 cut(s)	53, 203, 211, 244
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	4 cut(s)	59, 170, 250, 286
MflI	RGATCY	1 cut(s)	180
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	7 cut(s)	14, 35, 116, 161, 185, 228, 270
MseI	TTAA	1 cut(s)	310
MslI	CAYNNNNRTG	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	12
MspI	CCGG	2 cut(s)	144, 232
MspR9I	CCNGG	2 cut(s)	83, 232
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	2 cut(s)	21, 126
NciI	CCSGG	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	46
NmuCI	GTSAC	4 cut(s)	53, 203, 211, 244
PaeR7I	CTCGAG	1 cut(s)	188
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	3 cut(s)	11, 14, 128
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	180
PsyI	GACNNNGTC	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	251
SacII	CCGCGG	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	310
SatI	GCNGC	3 cut(s)	10, 13, 127
Sau3AI	GATC	1 cut(s)	180
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	83, 232
SetI	ASST	4 cut(s)	66, 172, 198, 218
SfaNI	GCATC	1 cut(s)	96
Sfr274I	CTCGAG	1 cut(s)	188
Sfr303I	CCGCGG	1 cut(s)	13
SgrBI	CCGCGG	1 cut(s)	13
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	2 cut(s)	176, 188
SmoI	CTYRAG	2 cut(s)	176, 188
SsiI	CCGC	5 cut(s)	10, 12, 99, 126, 249
StyD4I	CCNGG	2 cut(s)	81, 230
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	189
TauI	GCSGC	3 cut(s)	12, 15, 129
Tru1I	TTAA	1 cut(s)	310
Tru9I	TTAA	1 cut(s)	310
TseFI	GTSAC	4 cut(s)	53, 203, 211, 244
Tsp45I	GTSAC	4 cut(s)	53, 203, 211, 244
TspGWI	ACGGA	2 cut(s)	191, 312
Tth111I	GACNNNGTC	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.