Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003498

Physical Location & Seq

Genomic Coordinates Forward (+)

16804017 .. 16806281

Gene Structure 2265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g20750.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCTGGGCGTGGAAAGGGAGGCAAGGGACTGGGAAAGGGAGGAGCGAAACGACACCGCAAGGTCCTCCGCGACAATATCCAGGGCATCACTAAGCCGGCCATACGTCGGTTGGCTCGCAGAGGAGGAGTCAAGCGTATCAGTGGCTTGATTTATGAGGAAACAAGAGGTGTGCTCAAGATATTTCTCGAGAATGTGATCAGAGACGCCGTGACCTACACCGAGCACGCTCGCCGCAAGACTGTGACCGCCATGGATGTGGTGTATGCGTTGAAGAGGCAGGGCAGGACTCTCTATGGGTTTGGTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044815 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

CENP-T_C

Protein Analysis

104

Amino Acids

11.41

Weight (kDa)

11.48

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-T_C	PF15511	44 - 96	3.4e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07660
fragaria_vesca	FvH4_3g34560 FvH4_3g35181 FvH4_3g35183 FvH4_3g35220 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_6g14140 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20780
malus_domestica	MD01G1124600.v1.1 MD11G1117800.v1.1
prunus_persica	Prupe.2G232000_v2.0.a1 Prupe.2G232200_v2.0.a1 Prupe.5G134000_v2.0.a1 Prupe.6G081300_v2.0.a1 Prupe.6G251900_v2.0.a1 Prupe.7G028400_v2.0.a1
rosa_laevigata	RLG00000027349 RLG00000027452 RLG00000035544 RLG00000035615 RLG00000035618 RLG00000035660 RLG00000035661 RLG00000035663
rosa_multiflora	Rmu_sc0005638.1_g000004 Rmu_ssc0000250.1_g000014 Rmu_ssc0000309.1_g000042 Rmu_ssc0000309.1_g000043

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	72
AciI	CCGC	4 cut(s)	58, 70, 235, 249
AcoI	YGGCCR	1 cut(s)	99
AcyI	GRCGYC	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	81
Alw21I	GWGCWC	2 cut(s)	177, 228
Alw26I	GTCTC	1 cut(s)	198
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	64
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	64
Bbv12I	GWGCWC	2 cut(s)	177, 228
BceAI	ACGGC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	83
BclI	TGATCA	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	310
BisI	GCNGC	1 cut(s)	235
BlsI	GCNGC	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	83
BmrI	ACTGGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	41
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
BpuEI	CTTGAG	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	82, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	82, 252
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	3 cut(s)	57, 138, 141
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	101
BsiHKAI	GWGCWC	2 cut(s)	177, 228
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	198
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	177, 228
Bsp143I	GATC	1 cut(s)	198
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	4 cut(s)	58, 70, 235, 249
BspANI	GGCC	1 cut(s)	101
BspFNI	CGCG	1 cut(s)	72
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	36
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	82, 252
BssMI	GATC	1 cut(s)	198
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	4 cut(s)	99, 118, 228, 232
BstDEI	CTNAG	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	72
BstKTI	GATC	1 cut(s)	201
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	198
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BstUI	CGCG	1 cut(s)	72
BstXI	CCANNNNNNTGG	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	101
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	148
Cac8I	GCNNGC	4 cut(s)	99, 118, 228, 232
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	1 cut(s)	215
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	5 cut(s)	97, 101, 116, 147, 309
CviKI_1	RGCY	5 cut(s)	97, 101, 116, 147, 309
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	1 cut(s)	256
FaiI	YATR	5 cut(s)	104, 156, 254, 267, 297
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	1 cut(s)	252
FbaI	TGATCA	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	235
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	235
FspBI	CTAG	1 cut(s)	310
GluI	GCNGC	1 cut(s)	235
HaeIII	GGCC	1 cut(s)	101
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	256
HinfI	GANTC	2 cut(s)	129, 289
HpaII	CCGG	1 cut(s)	98
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	3 cut(s)	178, 188, 190
Hpy99I	CGWCG	1 cut(s)	111
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	106
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	106
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	256
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	6 cut(s)	17, 68, 95, 111, 266, 271
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	310
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	2 cut(s)	211, 244
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	177, 228
MlyI	GAGTC	2 cut(s)	138, 283
MnlI	CCTC	8 cut(s)	14, 35, 77, 116, 119, 151, 161, 270
MroNI	GCCGGC	1 cut(s)	97
MslI	CAYNNNNRTG	1 cut(s)	257
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	72
NaeI	GCCGGC	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	1 cut(s)	198
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	256
NmuCI	GTSAC	2 cut(s)	211, 244
PaeR7I	CTCGAG	1 cut(s)	188
PdiI	GCCGGC	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	236
PleI	GAGTC	2 cut(s)	137, 283
PpsI	GAGTC	2 cut(s)	137, 283
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	64
PspPPI	RGGWCCY	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	257
SatI	GCNGC	1 cut(s)	235
Sau3AI	GATC	1 cut(s)	198
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	2 cut(s)	138, 283
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	2 cut(s)	177, 228
SetI	ASST	4 cut(s)	66, 109, 172, 218
SfaNI	GCATC	1 cut(s)	96
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	64
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	176, 188
SmoI	CTYRAG	2 cut(s)	176, 188
SsiI	CCGC	4 cut(s)	58, 70, 235, 249
SspMI	CTAG	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	189
TauI	GCSGC	1 cut(s)	237
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	2 cut(s)	211, 244
Tsp45I	GTSAC	2 cut(s)	211, 244
TspRI	CASTG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	188
XspI	CTAG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.