Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003498

Physical Location & Seq

Genomic Coordinates Reverse (-)

23739343 .. 23739654

Gene Structure 312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1124600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCAGGACGCGGAAAGGGAGGCAAGGGCCTGGGCAAGGGCGGAGCGAAACGGCACCGTAAGGTCCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATTCGGAGGCTGGCCAGAAGAGGCGGGGTGAAGAGAATCAGCGGGCTAATCTACGAGGAGACCAGAGGCGTCCTCAAGATCTTCTTGGAGAACGTGATCCGTGACGCTGTGACGTACACCGAGCACGCCCGCAGGAAGACGGTCACCGCCATGGACGTCGTCTATGCTCTCAAGAGGCAGGGTAGGACCCTCTACGGATTCGGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044815 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

CENP-T_C

Protein Analysis

104

Amino Acids

11.41

Weight (kDa)

11.48

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-T_C	PF15511	44 - 96	3.4e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07660
fragaria_vesca	FvH4_3g34560 FvH4_3g35181 FvH4_3g35183 FvH4_3g35220 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_6g14140 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20780
malus_domestica	MD01G1124600.v1.1 MD11G1117800.v1.1
prunus_persica	Prupe.2G232000_v2.0.a1 Prupe.2G232200_v2.0.a1 Prupe.5G134000_v2.0.a1 Prupe.6G081300_v2.0.a1 Prupe.6G251900_v2.0.a1 Prupe.7G028400_v2.0.a1
rosa_laevigata	RLG00000027349 RLG00000027452 RLG00000035544 RLG00000035615 RLG00000035618 RLG00000035660 RLG00000035661 RLG00000035663
rosa_multiflora	Rmu_sc0005638.1_g000004 Rmu_ssc0000250.1_g000014 Rmu_ssc0000309.1_g000042 Rmu_ssc0000309.1_g000043

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	54
AccII	CGCG	2 cut(s)	12, 72
AciI	CCGC	7 cut(s)	12, 42, 70, 126, 144, 232, 249
AclWI	GGATC	1 cut(s)	193
AcoI	YGGCCR	1 cut(s)	114
AcyI	GRCGYC	2 cut(s)	171, 258
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	37
AjnI	CCWGG	2 cut(s)	30, 81
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	2 cut(s)	28, 114
AspS9I	GGNCC	3 cut(s)	28, 64, 288
AsuHPI	GGTGA	3 cut(s)	82, 142, 238
AvaII	GGWCC	2 cut(s)	64, 288
BalI	TGGCCA	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	228
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	2 cut(s)	32, 83
BcoDI	GTCTC	1 cut(s)	155
BglII	AGATCT	1 cut(s)	180
Bme1390I	CCNGG	2 cut(s)	32, 83
Bme18I	GGWCC	2 cut(s)	64, 288
BmgT120I	GGNCC	3 cut(s)	28, 64, 288
BmiI	GGNNCC	2 cut(s)	56, 290
BmrFI	CCNGG	2 cut(s)	32, 83
BmsI	GCATC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	245
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
BpuEI	CTTGAG	2 cut(s)	161, 257
BsaHI	GRCGYC	2 cut(s)	171, 258
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	31, 82, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse118I	RCCGGY	1 cut(s)	97
BseBI	CCWGG	2 cut(s)	32, 83
BseDI	CCNNGG	3 cut(s)	31, 82, 252
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	173
Bsh1236I	CGCG	2 cut(s)	12, 72
BshFI	GGCC	2 cut(s)	30, 116
BshNI	GGYRCC	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	2 cut(s)	30, 116
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	180, 198
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	7 cut(s)	12, 42, 70, 126, 144, 232, 249
BspANI	GGCC	2 cut(s)	30, 116
BspFNI	CGCG	2 cut(s)	12, 72
BspLI	GGNNCC	2 cut(s)	56, 290
BspPI	GGATC	1 cut(s)	193
BspT107I	GGYRCC	1 cut(s)	54
BspTNI	GGTCTC	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	3 cut(s)	31, 82, 252
BssMI	GATC	2 cut(s)	180, 198
BssNI	GRCGYC	2 cut(s)	171, 258
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	32, 83
Bst4CI	ACNGT	2 cut(s)	59, 244
Bst6I	CTCTTC	2 cut(s)	115, 128
BstACI	GRCGYC	2 cut(s)	171, 258
BstC8I	GCNNGC	5 cut(s)	99, 114, 146, 228, 232
BstDSI	CCRYGG	1 cut(s)	252
BstEII	GGTNACC	1 cut(s)	244
BstENI	CCTNNNNNAGG	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	2 cut(s)	12, 72
BstKTI	GATC	2 cut(s)	183, 201
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	180, 198
BstNI	CCWGG	2 cut(s)	32, 83
BstPI	GGTNACC	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	30, 81
BstUI	CGCG	2 cut(s)	12, 72
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	30, 116
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	78
Cac8I	GCNNGC	5 cut(s)	99, 114, 146, 228, 232
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	3 cut(s)	28, 64, 288
CseI	GACGC	3 cut(s)	18, 160, 215
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	5 cut(s)	30, 97, 112, 116, 148
CviKI_1	RGCY	5 cut(s)	30, 97, 112, 116, 148
CviQI	GTAC	1 cut(s)	217
DpnI	GATC	2 cut(s)	182, 200
DpnII	GATC	2 cut(s)	180, 198
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	2 cut(s)	115, 128
EarI	CTCTTC	2 cut(s)	115, 128
EciI	GGCGGA	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	64, 288
Eco91I	GGTNACC	1 cut(s)	244
EcoNI	CCTNNNNNAGG	1 cut(s)	35
EcoO109I	RGGNCCY	3 cut(s)	28, 64, 288
EcoO65I	GGTNACC	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	30, 81
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	256
FaiI	YATR	2 cut(s)	254, 267
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FatI	CATG	1 cut(s)	252
FauI	CCCGC	3 cut(s)	119, 137, 239
FokI	GGATG	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	30, 116
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	3 cut(s)	18, 160, 215
Hin1I	GRCGYC	2 cut(s)	171, 258
Hin1II	CATG	1 cut(s)	256
HinfI	GANTC	3 cut(s)	103, 138, 300
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	3 cut(s)	82, 142, 238
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	3 cut(s)	6, 178, 274
Hpy8I	GTNNAC	1 cut(s)	219
Hpy99I	CGWCG	1 cut(s)	263
HpyCH4III	ACNGT	2 cut(s)	59, 244
HpyCH4IV	ACGT	3 cut(s)	195, 215, 258
HpySE526I	ACGT	3 cut(s)	195, 215, 258
Hsp92I	GRCGYC	2 cut(s)	171, 258
Hsp92II	CATG	1 cut(s)	256
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	180, 198
LmnI	GCTCC	1 cut(s)	44
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	3 cut(s)	195, 215, 258
MaeIII	GTNAC	3 cut(s)	203, 211, 244
MalI	GATC	2 cut(s)	182, 200
MboI	GATC	2 cut(s)	180, 198
MboII	GAAGA	4 cut(s)	132, 145, 175, 250
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	228
MlsI	TGGCCA	1 cut(s)	116
MluNI	TGGCCA	1 cut(s)	116
MnlI	CCTC	9 cut(s)	14, 77, 102, 116, 151, 161, 185, 270, 302
Mox20I	TGGCCA	1 cut(s)	116
MroNI	GCCGGC	1 cut(s)	97
MscI	TGGCCA	1 cut(s)	116
MseI	TTAA	1 cut(s)	310
MslI	CAYNNNNRTG	1 cut(s)	251
Msp20I	TGGCCA	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	2 cut(s)	32, 83
MvaI	CCWGG	2 cut(s)	32, 83
MvnI	CGCG	2 cut(s)	12, 72
NaeI	GCCGGC	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	2 cut(s)	180, 198
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	2 cut(s)	56, 290
NmuCI	GTSAC	3 cut(s)	203, 211, 244
PdiI	GCCGGC	1 cut(s)	99
PfeI	GAWTC	3 cut(s)	103, 138, 300
PflFI	GACNNNGTC	1 cut(s)	260
PpuMI	RGGWCCY	2 cut(s)	64, 288
Psp5II	RGGWCCY	2 cut(s)	64, 288
Psp6I	CCWGG	2 cut(s)	30, 81
PspEI	GGTNACC	1 cut(s)	244
PspGI	CCWGG	2 cut(s)	30, 81
PspN4I	GGNNCC	2 cut(s)	56, 290
PspPI	GGNCC	3 cut(s)	28, 64, 288
PspPPI	RGGWCCY	2 cut(s)	64, 288
PsuI	RGATCY	1 cut(s)	180
PsyI	GACNNNGTC	1 cut(s)	260
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	310
Sau3AI	GATC	2 cut(s)	180, 198
Sau96I	GGNCC	3 cut(s)	28, 64, 288
ScrFI	CCNGG	2 cut(s)	32, 83
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	4 cut(s)	66, 198, 218, 261
SfaNI	GCATC	1 cut(s)	96
SinI	GGWCC	2 cut(s)	64, 288
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	2 cut(s)	176, 272
SmoI	CTYRAG	2 cut(s)	176, 272
SsiI	CCGC	7 cut(s)	12, 42, 70, 126, 144, 232, 249
StyD4I	CCNGG	2 cut(s)	30, 81
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	59, 244
TaiI	ACGT	3 cut(s)	198, 218, 261
TfiI	GAWTC	3 cut(s)	103, 138, 300
Tru1I	TTAA	1 cut(s)	310
Tru9I	TTAA	1 cut(s)	310
TseFI	GTSAC	3 cut(s)	203, 211, 244
Tsp45I	GTSAC	3 cut(s)	203, 211, 244
TspGWI	ACGGA	2 cut(s)	191, 312
Tth111I	GACNNNGTC	1 cut(s)	260
VpaK11BI	GGWCC	2 cut(s)	64, 288
XagI	CCTNNNNNAGG	1 cut(s)	35
ZraI	GACGTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.