Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003498

Physical Location & Seq

Genomic Coordinates Forward (+)

8654794 .. 8655608

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCGGGTCGGGGCAAGGGAGGCAAGGGTTTGGGCAAAGGCGGAGCCAAGCGGCACAGGAAGGTCCTCCGCGACAACATCCAGGGCATCACGAAGCCGGCCATACGCCGTCTCGCTCGCCGTGGCGGAGTGAAGAGGATCAGCGGCCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTCCTGGAGAATGTGATCCGCGACGCCGTGACGTACACCGAGCACGCCAGGAGAAAGACGGTGACGGCCATGGACGTCGTCTACGCGCTCAAGAGGCAAGGCAGGACTCTCTATGGGTTCGGCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044815 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

CENP-T_C

Protein Analysis

104

Amino Acids

11.41

Weight (kDa)

11.48

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-T_C	PF15511	44 - 96	3.4e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07660
fragaria_vesca	FvH4_3g34560 FvH4_3g35181 FvH4_3g35183 FvH4_3g35220 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_6g14140 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20780
malus_domestica	MD01G1124600.v1.1 MD11G1117800.v1.1
prunus_persica	Prupe.2G232000_v2.0.a1 Prupe.2G232200_v2.0.a1 Prupe.5G134000_v2.0.a1 Prupe.6G081300_v2.0.a1 Prupe.6G251900_v2.0.a1 Prupe.7G028400_v2.0.a1
rosa_laevigata	RLG00000027349 RLG00000027452 RLG00000035544 RLG00000035615 RLG00000035618 RLG00000035660 RLG00000035661 RLG00000035663
rosa_multiflora	Rmu_sc0005638.1_g000004 Rmu_ssc0000250.1_g000014 Rmu_ssc0000309.1_g000042 Rmu_ssc0000309.1_g000043

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
AccI	GTMKAC	1 cut(s)	264
AccII	CGCG	3 cut(s)	72, 204, 269
AciI	CCGC	7 cut(s)	42, 52, 70, 126, 144, 202, 306
AclWI	GGATC	2 cut(s)	146, 193
AcoI	YGGCCR	2 cut(s)	99, 249
AcvI	CACGTG	1 cut(s)	167
AcyI	GRCGYC	3 cut(s)	171, 207, 258
AfaI	GTAC	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	164
AjnI	CCWGG	3 cut(s)	81, 186, 230
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	2 cut(s)	116, 155
AlwI	GGATC	2 cut(s)	146, 193
AoxI	GGCC	3 cut(s)	99, 145, 249
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	64
BbrPI	CACGTG	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	228
BceAI	ACGGC	4 cut(s)	93, 105, 194, 264
BciT130I	CCWGG	3 cut(s)	83, 188, 232
BcoDI	GTCTC	2 cut(s)	116, 155
BfaI	CTAG	1 cut(s)	310
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	3 cut(s)	53, 145, 307
BlsI	GCNGC	3 cut(s)	54, 146, 308
Bme1390I	CCNGG	3 cut(s)	83, 188, 232
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	3 cut(s)	83, 188, 232
BmsI	GCATC	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	209
BpuEI	CTTGAG	2 cut(s)	161, 257
BsaAI	YACGTR	1 cut(s)	167
BsaHI	GRCGYC	3 cut(s)	171, 207, 258
BsaJI	CCNNGG	3 cut(s)	82, 121, 252
Bse118I	RCCGGY	1 cut(s)	97
BseBI	CCWGG	3 cut(s)	83, 188, 232
BseDI	CCNNGG	3 cut(s)	82, 121, 252
BseGI	GGATG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	173
Bsh1236I	CGCG	3 cut(s)	72, 204, 269
BshFI	GGCC	3 cut(s)	101, 147, 251
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	98
BsmAI	GTCTC	2 cut(s)	116, 155
BsmBI	CGTCTC	1 cut(s)	116
BsnI	GGCC	3 cut(s)	101, 147, 251
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	138, 180, 198
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	7 cut(s)	42, 52, 70, 126, 144, 202, 306
BspANI	GGCC	3 cut(s)	101, 147, 251
BspFNI	CGCG	3 cut(s)	72, 204, 269
BspLI	GGNNCC	1 cut(s)	46
BspPI	GGATC	2 cut(s)	146, 193
BsrFI	RCCGGY	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	3 cut(s)	82, 121, 252
BssMI	GATC	3 cut(s)	138, 180, 198
BssNI	GRCGYC	3 cut(s)	171, 207, 258
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	3 cut(s)	83, 188, 232
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	128
BstACI	GRCGYC	3 cut(s)	171, 207, 258
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	3 cut(s)	99, 118, 228
BstDSI	CCRYGG	2 cut(s)	121, 252
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	3 cut(s)	72, 204, 269
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	3 cut(s)	141, 183, 201
BstMAI	GTCTC	2 cut(s)	116, 155
BstMBI	GATC	3 cut(s)	138, 180, 198
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 277
BstNI	CCWGG	3 cut(s)	83, 188, 232
BstSCI	CCNGG	3 cut(s)	81, 186, 230
BstUI	CGCG	3 cut(s)	72, 204, 269
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	3 cut(s)	101, 147, 251
BtgI	CCRYGG	2 cut(s)	121, 252
BtsCI	GGATG	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	99, 118, 228
CfoI	GCGC	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	2 cut(s)	160, 215
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	6 cut(s)	47, 97, 101, 147, 251, 309
CviKI_1	RGCY	6 cut(s)	47, 97, 101, 147, 251, 309
CviQI	GTAC	1 cut(s)	217
DpnI	GATC	3 cut(s)	140, 182, 200
DpnII	GATC	3 cut(s)	138, 180, 198
EaeI	YGGCCR	2 cut(s)	99, 249
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
EciI	GGCGGA	2 cut(s)	57, 141
Eco130I	CCWWGG	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	64
Eco72I	CACGTG	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRII	CCWGG	3 cut(s)	81, 186, 230
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	116
FaeI	CATG	1 cut(s)	256
FaiI	YATR	3 cut(s)	104, 254, 297
FatI	CATG	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	3 cut(s)	53, 145, 307
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	3 cut(s)	53, 145, 307
FspBI	CTAG	1 cut(s)	310
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	3 cut(s)	53, 145, 307
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	3 cut(s)	101, 147, 251
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	2 cut(s)	160, 215
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	3 cut(s)	171, 207, 258
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	2 cut(s)	219, 265
Hpy188III	TCNNGA	3 cut(s)	91, 178, 274
Hpy8I	GTNNAC	2 cut(s)	219, 265
Hpy99I	CGWCG	2 cut(s)	209, 263
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	3 cut(s)	166, 215, 258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 277
HpySE526I	ACGT	3 cut(s)	166, 215, 258
Hsp92I	GRCGYC	3 cut(s)	171, 207, 258
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	1 cut(s)	269
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
Kzo9I	GATC	3 cut(s)	138, 180, 198
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	9 cut(s)	43, 68, 95, 111, 173, 200, 217, 244, 271
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	310
MaeII	ACGT	3 cut(s)	166, 215, 258
MaeIII	GTNAC	2 cut(s)	211, 244
MalI	GATC	3 cut(s)	140, 182, 200
MboI	GATC	3 cut(s)	138, 180, 198
MboII	GAAGA	2 cut(s)	145, 175
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	7 cut(s)	14, 77, 129, 151, 158, 185, 270
MroNI	GCCGGC	1 cut(s)	97
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	3 cut(s)	83, 188, 232
MvaI	CCWGG	3 cut(s)	83, 188, 232
MvnI	CGCG	3 cut(s)	72, 204, 269
MwoI	GCNNNNNNNGC	2 cut(s)	21, 277
NaeI	GCCGGC	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	3 cut(s)	138, 180, 198
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	46
NmuCI	GTSAC	2 cut(s)	211, 244
PdiI	GCCGGC	1 cut(s)	99
PflFI	GACNNNGTC	1 cut(s)	260
PfoI	TCCNGGA	1 cut(s)	186
PkrI	GCNGC	3 cut(s)	54, 146, 308
PleI	GAGTC	1 cut(s)	283
PmaCI	CACGTG	1 cut(s)	167
PmlI	CACGTG	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	283
Ppu21I	YACGTR	1 cut(s)	167
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	3 cut(s)	81, 186, 230
PspCI	CACGTG	1 cut(s)	167
PspGI	CCWGG	3 cut(s)	81, 186, 230
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	64
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	180
PsyI	GACNNNGTC	1 cut(s)	260
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SatI	GCNGC	3 cut(s)	53, 145, 307
Sau3AI	GATC	3 cut(s)	138, 180, 198
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	3 cut(s)	83, 188, 232
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	4 cut(s)	66, 169, 218, 261
SfaNI	GCATC	1 cut(s)	96
SinI	GGWCC	1 cut(s)	64
SmlI	CTYRAG	2 cut(s)	176, 272
SmoI	CTYRAG	2 cut(s)	176, 272
SsiI	CCGC	7 cut(s)	42, 52, 70, 126, 144, 202, 306
SspMI	CTAG	1 cut(s)	310
StyD4I	CCNGG	3 cut(s)	81, 186, 230
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	3 cut(s)	169, 218, 261
TauI	GCSGC	3 cut(s)	55, 147, 309
TseFI	GTSAC	2 cut(s)	211, 244
Tsp45I	GTSAC	2 cut(s)	211, 244
Tth111I	GACNNNGTC	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	264
XspI	CTAG	1 cut(s)	310
ZraI	GACGTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.