Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003498

Physical Location & Seq

Genomic Coordinates Reverse (-)

11826938 .. 11827249

Gene Structure 312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027452

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCTGGGCGTGGCAAGGGAGGCAAGGGATTGGGGAAGGGAGGAGCGAAACGACACCGTAAGGTCCTCCGCGACAACATCCAGGGGATCACCAAGCCTGCCATTCGTCGTTTGGCTCGCAGAGGAGGTGTGAAGCGTATCAGTGGTTTGATTTATGAAGAGACACGAGGTGTGCTCAAGATATTTCTTGAGAATGTGATCAGAGACGCCGTGACTTACACTGAGCATGCTCGCCGCAAGACTGTGACCGCCATGGATGTGGTTTATGCGCTCAAGAGGCAGGGCAGGACTCTCTATGGGTTCGGTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000786 GO:0000788 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044815 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

CENP-T_C

Protein Analysis

104

Amino Acids

11.41

Weight (kDa)

11.48

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-T_C	PF15511	44 - 96	3.4e-08	Centromere kinetochore component CENP-T histone fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07660
fragaria_vesca	FvH4_3g34560 FvH4_3g35181 FvH4_3g35183 FvH4_3g35220 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_6g14140 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20780
malus_domestica	MD01G1124600.v1.1 MD11G1117800.v1.1
prunus_persica	Prupe.2G232000_v2.0.a1 Prupe.2G232200_v2.0.a1 Prupe.5G134000_v2.0.a1 Prupe.6G081300_v2.0.a1 Prupe.6G251900_v2.0.a1 Prupe.7G028400_v2.0.a1
rosa_laevigata	RLG00000027349 RLG00000027452 RLG00000035544 RLG00000035615 RLG00000035618 RLG00000035660 RLG00000035661 RLG00000035663
rosa_multiflora	Rmu_sc0005638.1_g000004 Rmu_ssc0000250.1_g000014 Rmu_ssc0000309.1_g000042 Rmu_ssc0000309.1_g000043

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	72
AciI	CCGC	3 cut(s)	70, 235, 249
AclWI	GGATC	1 cut(s)	95
AcyI	GRCGYC	1 cut(s)	207
AdeI	CACNNNGTG	1 cut(s)	170
AjnI	CCWGG	1 cut(s)	81
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	2 cut(s)	155, 198
AlwI	GGATC	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	64
BauI	CACGAG	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	177
BceAI	ACGGC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	83
BclI	TGATCA	1 cut(s)	198
BcoDI	GTCTC	2 cut(s)	155, 198
BfaI	CTAG	1 cut(s)	310
BisI	GCNGC	1 cut(s)	235
BlsI	GCNGC	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	83
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
BpuEI	CTTGAG	3 cut(s)	161, 209, 257
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	82, 252
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	82, 252
BseGI	GGATG	2 cut(s)	78, 262
BseMII	CTCAG	1 cut(s)	213
BseRI	GAGGAG	2 cut(s)	57, 138
Bsh1236I	CGCG	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	177
BsmAI	GTCTC	2 cut(s)	155, 198
BsmBI	CGTCTC	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	87, 198
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	3 cut(s)	70, 235, 249
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	72
BspPI	GGATC	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	82, 252
BssMI	GATC	2 cut(s)	87, 198
BssNI	GRCGYC	1 cut(s)	207
BssSI	CACGAG	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	2 cut(s)	59, 244
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	4 cut(s)	99, 118, 228, 232
BstDEI	CTNAG	1 cut(s)	222
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	78, 262
BstFNI	CGCG	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	2 cut(s)	90, 201
BstMAI	GTCTC	2 cut(s)	155, 198
BstMBI	GATC	2 cut(s)	87, 198
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 277
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	81
BstUI	CGCG	1 cut(s)	72
BstXI	CCANNNNNNTGG	1 cut(s)	259
BtgI	CCRYGG	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	78, 262
BtsIMutI	CAGTG	2 cut(s)	148, 219
Cac8I	GCNNGC	4 cut(s)	99, 118, 228, 232
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	1 cut(s)	215
CviAII	CATG	2 cut(s)	227, 253
CviJI	RGCY	3 cut(s)	97, 116, 309
CviKI_1	RGCY	3 cut(s)	97, 116, 309
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	2 cut(s)	89, 200
DpnII	GATC	2 cut(s)	87, 198
DraIII	CACNNNGTG	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	2 cut(s)	230, 256
FaiI	YATR	5 cut(s)	156, 228, 254, 267, 297
FatI	CATG	2 cut(s)	226, 252
FbaI	TGATCA	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	235
FokI	GGATG	2 cut(s)	65, 269
Fsp4HI	GCNGC	1 cut(s)	235
FspBI	CTAG	1 cut(s)	310
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	235
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	2 cut(s)	230, 256
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	1 cut(s)	289
HphI	GGTGA	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	3 cut(s)	178, 188, 274
Hpy99I	CGWCG	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	2 cut(s)	59, 244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 277
HpyF3I	CTNAG	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	230, 256
HspAI	GCGC	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	2 cut(s)	87, 198
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	5 cut(s)	68, 95, 111, 266, 271
MaeI	CTAG	1 cut(s)	310
MaeIII	GTNAC	2 cut(s)	211, 244
MalI	GATC	2 cut(s)	89, 200
MboI	GATC	2 cut(s)	87, 198
MboII	GAAGA	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	7 cut(s)	14, 35, 77, 116, 119, 161, 270
MslI	CAYNNNNRTG	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	21, 277
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	2 cut(s)	87, 198
NlaIII	CATG	2 cut(s)	230, 256
NmuCI	GTSAC	2 cut(s)	211, 244
NspI	RCATGY	1 cut(s)	230
PaeI	GCATGC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	236
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	64
PspPPI	RGGWCCY	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	257
SatI	GCNGC	1 cut(s)	235
Sau3AI	GATC	2 cut(s)	87, 198
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	3 cut(s)	66, 130, 172
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	3 cut(s)	176, 188, 272
SmoI	CTYRAG	3 cut(s)	176, 188, 272
SphI	GCATGC	1 cut(s)	230
SsiI	CCGC	3 cut(s)	70, 235, 249
SspMI	CTAG	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	59, 244
TauI	GCSGC	1 cut(s)	237
TscAI	CASTG	2 cut(s)	148, 226
TseFI	GTSAC	2 cut(s)	211, 244
Tsp45I	GTSAC	2 cut(s)	211, 244
TspDTI	ATGAA	1 cut(s)	171
TspRI	CASTG	2 cut(s)	148, 226
VpaK11BI	GGWCC	1 cut(s)	64
XceI	RCATGY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XspI	CTAG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.