Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G07660 |
| fragaria_vesca | FvH4_3g34560 FvH4_3g35181 FvH4_3g35183 FvH4_3g35220 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_3g35491 FvH4_6g14140 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20750 FvH4_7g20780 |
| malus_domestica | MD01G1124600.v1.1 MD11G1117800.v1.1 |
| prunus_persica | Prupe.2G232000_v2.0.a1 Prupe.2G232200_v2.0.a1 Prupe.5G134000_v2.0.a1 Prupe.6G081300_v2.0.a1 Prupe.6G251900_v2.0.a1 Prupe.7G028400_v2.0.a1 |
| rosa_laevigata | RLG00000027349 RLG00000027452 RLG00000035544 RLG00000035615 RLG00000035618 RLG00000035660 RLG00000035661 RLG00000035663 |
| rosa_multiflora | Rmu_sc0005638.1_g000004 Rmu_ssc0000250.1_g000014 Rmu_ssc0000309.1_g000042 Rmu_ssc0000309.1_g000043 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 193 |
| AcvI | CACGTG | 1 cut(s) | 167 |
| AcyI | GRCGYC | 1 cut(s) | 171 |
| AfaI | GTAC | 1 cut(s) | 296 |
| AflIII | ACRYGT | 1 cut(s) | 164 |
| AjnI | CCWGG | 1 cut(s) | 81 |
| Alw21I | GWGCWC | 1 cut(s) | 228 |
| Alw26I | GTCTC | 2 cut(s) | 155, 198 |
| AlwI | GGATC | 1 cut(s) | 193 |
| Ama87I | CYCGRG | 1 cut(s) | 188 |
| AoxI | GGCC | 1 cut(s) | 145 |
| AsuC2I | CCSGG | 1 cut(s) | 232 |
| AsuHPI | GGTGA | 2 cut(s) | 82, 256 |
| AvaI | CYCGRG | 1 cut(s) | 188 |
| BbrPI | CACGTG | 1 cut(s) | 167 |
| BbsI | GAAGAC | 1 cut(s) | 245 |
| Bbv12I | GWGCWC | 1 cut(s) | 228 |
| BbvCI | CCTCAGC | 1 cut(s) | 68 |
| BciT130I | CCWGG | 1 cut(s) | 83 |
| BcnI | CCSGG | 1 cut(s) | 232 |
| BcoDI | GTCTC | 2 cut(s) | 155, 198 |
| BglII | AGATCT | 1 cut(s) | 180 |
| Bme1390I | CCNGG | 2 cut(s) | 83, 232 |
| BmeT110I | CYCGRG | 1 cut(s) | 188 |
| BmiI | GGNNCC | 1 cut(s) | 46 |
| BmrFI | CCNGG | 2 cut(s) | 83, 232 |
| BmsI | GCATC | 1 cut(s) | 96 |
| BpiI | GAAGAC | 1 cut(s) | 245 |
| Bpu10I | CCTNAGC | 1 cut(s) | 68 |
| BpuEI | CTTGAG | 2 cut(s) | 161, 257 |
| BpuMI | CCSGG | 1 cut(s) | 232 |
| BsaAI | YACGTR | 1 cut(s) | 167 |
| BsaHI | GRCGYC | 1 cut(s) | 171 |
| BsaJI | CCNNGG | 2 cut(s) | 82, 252 |
| BseBI | CCWGG | 1 cut(s) | 83 |
| BseDI | CCNNGG | 2 cut(s) | 82, 252 |
| BseGI | GGATG | 2 cut(s) | 78, 262 |
| BseMII | CTCAG | 1 cut(s) | 59 |
| BseRI | GAGGAG | 2 cut(s) | 57, 173 |
| BshFI | GGCC | 1 cut(s) | 147 |
| BsiHKAI | GWGCWC | 1 cut(s) | 228 |
| BsiHKCI | CYCGRG | 1 cut(s) | 188 |
| BsiSI | CCGG | 1 cut(s) | 232 |
| BsmAI | GTCTC | 2 cut(s) | 155, 198 |
| BsmBI | CGTCTC | 1 cut(s) | 198 |
| BsnI | GGCC | 1 cut(s) | 147 |
| BsoBI | CYCGRG | 1 cut(s) | 188 |
| Bsp1286I | GDGCHC | 1 cut(s) | 228 |
| Bsp143I | GATC | 2 cut(s) | 180, 198 |
| Bsp19I | CCATGG | 1 cut(s) | 252 |
| BspANI | GGCC | 1 cut(s) | 147 |
| BspCNI | CTCAG | 1 cut(s) | 60 |
| BspLI | GGNNCC | 1 cut(s) | 46 |
| BspPI | GGATC | 1 cut(s) | 193 |
| BssECI | CCNNGG | 2 cut(s) | 82, 252 |
| BssMI | GATC | 2 cut(s) | 180, 198 |
| BssNI | GRCGYC | 1 cut(s) | 171 |
| BssT1I | CCWWGG | 1 cut(s) | 252 |
| Bst2UI | CCWGG | 1 cut(s) | 83 |
| Bst4CI | ACNGT | 1 cut(s) | 244 |
| BstACI | GRCGYC | 1 cut(s) | 171 |
| BstBAI | YACGTR | 1 cut(s) | 167 |
| BstC8I | GCNNGC | 2 cut(s) | 99, 228 |
| BstDEI | CTNAG | 1 cut(s) | 68 |
| BstDSI | CCRYGG | 1 cut(s) | 252 |
| BstF5I | GGATG | 2 cut(s) | 78, 262 |
| BstKTI | GATC | 2 cut(s) | 183, 201 |
| BstMAI | GTCTC | 2 cut(s) | 155, 198 |
| BstMBI | GATC | 2 cut(s) | 180, 198 |
| BstNI | CCWGG | 1 cut(s) | 83 |
| BstSCI | CCNGG | 2 cut(s) | 81, 230 |
| BstV2I | GAAGAC | 1 cut(s) | 245 |
| BstX2I | RGATCY | 1 cut(s) | 180 |
| BstYI | RGATCY | 1 cut(s) | 180 |
| BsuRI | GGCC | 1 cut(s) | 147 |
| BtgI | CCRYGG | 1 cut(s) | 252 |
| BtsCI | GGATG | 2 cut(s) | 78, 262 |
| BtsIMutI | CAGTG | 1 cut(s) | 148 |
| Cac8I | GCNNGC | 2 cut(s) | 99, 228 |
| CseI | GACGC | 2 cut(s) | 160, 215 |
| Csp6I | GTAC | 1 cut(s) | 295 |
| CviAII | CATG | 1 cut(s) | 253 |
| CviJI | RGCY | 3 cut(s) | 47, 97, 147 |
| CviKI_1 | RGCY | 3 cut(s) | 47, 97, 147 |
| CviQI | GTAC | 1 cut(s) | 295 |
| DdeI | CTNAG | 1 cut(s) | 68 |
| DpnI | GATC | 2 cut(s) | 182, 200 |
| DpnII | GATC | 2 cut(s) | 180, 198 |
| Eco130I | CCWWGG | 1 cut(s) | 252 |
| Eco72I | CACGTG | 1 cut(s) | 167 |
| Eco88I | CYCGRG | 1 cut(s) | 188 |
| EcoRII | CCWGG | 1 cut(s) | 81 |
| EcoT14I | CCWWGG | 1 cut(s) | 252 |
| ErhI | CCWWGG | 1 cut(s) | 252 |
| Esp3I | CGTCTC | 1 cut(s) | 198 |
| FaeI | CATG | 1 cut(s) | 256 |
| FaiI | YATR | 2 cut(s) | 254, 267 |
| FatI | CATG | 1 cut(s) | 252 |
| FokI | GGATG | 2 cut(s) | 65, 269 |
| HaeIII | GGCC | 1 cut(s) | 147 |
| HapII | CCGG | 1 cut(s) | 232 |
| HgaI | GACGC | 2 cut(s) | 160, 215 |
| Hin1I | GRCGYC | 1 cut(s) | 171 |
| Hin1II | CATG | 1 cut(s) | 256 |
| HinfI | GANTC | 1 cut(s) | 289 |
| HpaII | CCGG | 1 cut(s) | 232 |
| HphI | GGTGA | 2 cut(s) | 82, 256 |
| Hpy188I | TCNGA | 1 cut(s) | 203 |
| Hpy188III | TCNNGA | 3 cut(s) | 178, 190, 274 |
| Hpy99I | CGWCG | 1 cut(s) | 111 |
| HpyAV | CCTTC | 2 cut(s) | 10, 55 |
| HpyCH4III | ACNGT | 1 cut(s) | 244 |
| HpyCH4IV | ACGT | 1 cut(s) | 166 |
| HpyCH4V | TGCA | 1 cut(s) | 101 |
| HpyF3I | CTNAG | 1 cut(s) | 68 |
| HpySE526I | ACGT | 1 cut(s) | 166 |
| Hsp92I | GRCGYC | 1 cut(s) | 171 |
| Hsp92II | CATG | 1 cut(s) | 256 |
| Kzo9I | GATC | 2 cut(s) | 180, 198 |
| LmnI | GCTCC | 1 cut(s) | 44 |
| LpnPI | CCDG | 7 cut(s) | 43, 68, 95, 111, 245, 266, 271 |
| LweI | GCATC | 1 cut(s) | 96 |
| MaeII | ACGT | 1 cut(s) | 166 |
| MaeIII | GTNAC | 2 cut(s) | 211, 244 |
| MalI | GATC | 2 cut(s) | 182, 200 |
| MboI | GATC | 2 cut(s) | 180, 198 |
| MboII | GAAGA | 2 cut(s) | 175, 250 |
| MflI | RGATCY | 1 cut(s) | 180 |
| MhlI | GDGCHC | 1 cut(s) | 228 |
| MluCI | AATT | 1 cut(s) | 102 |
| MlyI | GAGTC | 1 cut(s) | 283 |
| MspI | CCGG | 1 cut(s) | 232 |
| MspR9I | CCNGG | 2 cut(s) | 83, 232 |
| MvaI | CCWGG | 1 cut(s) | 83 |
| NciI | CCSGG | 1 cut(s) | 232 |
| NcoI | CCATGG | 1 cut(s) | 252 |
| NdeII | GATC | 2 cut(s) | 180, 198 |
| NlaIII | CATG | 1 cut(s) | 256 |
| NlaIV | GGNNCC | 1 cut(s) | 46 |
| NmuCI | GTSAC | 2 cut(s) | 211, 244 |
| PaeR7I | CTCGAG | 1 cut(s) | 188 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 115 |
| PleI | GAGTC | 1 cut(s) | 283 |
| PmaCI | CACGTG | 1 cut(s) | 167 |
| PmlI | CACGTG | 1 cut(s) | 167 |
| PpsI | GAGTC | 1 cut(s) | 283 |
| Ppu21I | YACGTR | 1 cut(s) | 167 |
| Psp6I | CCWGG | 1 cut(s) | 81 |
| PspCI | CACGTG | 1 cut(s) | 167 |
| PspGI | CCWGG | 1 cut(s) | 81 |
| PspN4I | GGNNCC | 1 cut(s) | 46 |
| PsuI | RGATCY | 1 cut(s) | 180 |
| RsaI | GTAC | 1 cut(s) | 296 |
| RsaNI | GTAC | 1 cut(s) | 295 |
| Sau3AI | GATC | 2 cut(s) | 180, 198 |
| SchI | GAGTC | 1 cut(s) | 283 |
| ScrFI | CCNGG | 2 cut(s) | 83, 232 |
| SduI | GDGCHC | 1 cut(s) | 228 |
| SetI | ASST | 3 cut(s) | 66, 169, 218 |
| SfaNI | GCATC | 1 cut(s) | 96 |
| Sfr274I | CTCGAG | 1 cut(s) | 188 |
| SlaI | CTCGAG | 1 cut(s) | 188 |
| SmlI | CTYRAG | 3 cut(s) | 176, 188, 272 |
| SmoI | CTYRAG | 3 cut(s) | 176, 188, 272 |
| Sse9I | AATT | 1 cut(s) | 102 |
| StyD4I | CCNGG | 2 cut(s) | 81, 230 |
| StyI | CCWWGG | 1 cut(s) | 252 |
| TaaI | ACNGT | 1 cut(s) | 244 |
| TaiI | ACGT | 1 cut(s) | 169 |
| TaqI | TCGA | 1 cut(s) | 189 |
| TasI | AATT | 1 cut(s) | 102 |
| TscAI | CASTG | 1 cut(s) | 148 |
| TseFI | GTSAC | 2 cut(s) | 211, 244 |
| Tsp45I | GTSAC | 2 cut(s) | 211, 244 |
| TspRI | CASTG | 1 cut(s) | 148 |
| XhoI | CTCGAG | 1 cut(s) | 188 |